mRNA_P-littoralis_Contig874.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig874.1.1
Unique NamemRNA_P-littoralis_Contig874.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig874.1.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.370e-59
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:    4 STGESETESGGVGSDGNLTSTAIRTLAGAGEPQSRAQVQKQQAEVKSKAPNEAFRQKRLARGDQITKAVKTLADSVAARRVLDKEAAVRARETAAEFRKQRKVNNMRGQLEFSEVGSAQYYELR 375
            STGESETE GGVGSDGNLTSTAIRT AGAGEPQSRAQVQKQQAEVKSKA NEAFRQKRLA+GDQITKAVKTLADSVAARRVLD+EAAVRARETAAE RKQRKVNNMRG LEFSEV SAQYYELR
Sbjct:  318 STGESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELR 441
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BLAST of mRNA_P-littoralis_Contig874.1.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.220e-10
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   16 SETESGGVGSDGNLTSTAIRTLAGAGEPQSRAQVQKQQAEVKSKAPNEAFRQKRLARGDQITKAVKTLADSVAARRVLDKEAAVRARETAAEFRKQRKVNNMRGQLEFSEVG 351
            S +E+ G  +D +L+S+AIR  AGAGE QSRAQV+K+ A V +    E   + + A   ++  AV+ L+ +V +R+ LD+EAA RAR   A   KQ K++++RG+LEF+  G
Sbjct:   51 SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKIDDLRGKLEFTLEG 162
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BLAST of mRNA_P-littoralis_Contig874.1.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.370e-9
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:   16 SETESGGVGSDGNLTSTAIRTLAGAGEPQSRAQVQKQQAEVKSKAPNEAFRQKRLARGDQITKAVKTLADSVAARRVLDKEAAVRARETAAEFRKQRKVNNMRGQLEFSEVG 351
            S +E+ G  +D +L+S+AIR  AGAGE QSRAQV+K+ A V +    E  R+ + A    +  AV  L+ +V +R+ LD+EAA RAR   A   K+ K++++RG+LEF+  G
Sbjct:   51 SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFTLEG 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE5.370e-5993.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3M7_9PHAE6.220e-1042.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE1.370e-942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig874contigP-littoralis_Contig874:1610..1986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791755.2188916-CDS-P-littoralis_Contig874:1611..19861680791755.2188916-CDS-P-littoralis_Contig874:1611..1986Pylaiella littoralis U1_48CDSP-littoralis_Contig874 1612..1986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig874.1.1prot_P-littoralis_Contig874.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig874 1612..1986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig874.1.1

>prot_P-littoralis_Contig874.1.1 ID=prot_P-littoralis_Contig874.1.1|Name=mRNA_P-littoralis_Contig874.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
SSTGESETESGGVGSDGNLTSTAIRTLAGAGEPQSRAQVQKQQAEVKSKA
PNEAFRQKRLARGDQITKAVKTLADSVAARRVLDKEAAVRARETAAEFRK
QRKVNNMRGQLEFSEVGSAQYYELR
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mRNA from alignment at P-littoralis_Contig874:1610..1986-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig874.1.1 ID=mRNA_P-littoralis_Contig874.1.1|Name=mRNA_P-littoralis_Contig874.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=377bp|location=Sequence derived from alignment at P-littoralis_Contig874:1610..1986- (Pylaiella littoralis U1_48)
AGCAGCACGGGGGAAAGCGAGACTGAGTCAGGCGGGGTAGGGTCCGATGG
TAACCTCACGTCAACAGCTATCCGGACACTCGCCGGGGCCGGCGAGCCGC
AAAGCCGAGCGCAGGTGCAAAAGCAGCAGGCGGAGGTGAAATCAAAGGCT
CCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCGAGGTGACCAGATTAC
TAAGGCCGTGAAGACGCTGGCGGACTCCGTTGCTGCGCGGCGGGTTCTCG
ATAAAGAGGCTGCGGTCAGGGCACGCGAGACGGCCGCCGAATTCCGCAAG
CAGAGGAAGGTCAACAACATGCGAGGGCAACTCGAGTTTTCGGAGGTGGG
TTCGGCTCAGTACTATGAGCTTCGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig874:1610..1986-

>mRNA_P-littoralis_Contig874.1.1 ID=mRNA_P-littoralis_Contig874.1.1|Name=mRNA_P-littoralis_Contig874.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig874:1610..1986- (Pylaiella littoralis U1_48)
AGCAGCACGGGGGAAAGCGAGACTGAGTCAGGCGGGGTAGGGTCCGATGG
TAACCTCACGTCAACAGCTATCCGGACACTCGCCGGGGCCGGCGAGCCGC
AAAGCCGAGCGCAGGTGCAAAAGCAGCAGGCGGAGGTGAAATCAAAGGCT
CCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCGAGGTGACCAGATTAC
TAAGGCCGTGAAGACGCTGGCGGACTCCGTTGCTGCGCGGCGGGTTCTCG
ATAAAGAGGCTGCGGTCAGGGCACGCGAGACGGCCGCCGAATTCCGCAAG
CAGAGGAAGGTCAACAACATGCGAGGGCAACTCGAGTTTTCGGAGGTGGG
TTCGGCTCAGTACTATGAGCTTCGT
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