mRNA_P-littoralis_Contig872.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig872.25.1
Unique NamemRNA_P-littoralis_Contig872.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig872.25.1 vs. uniprot
Match: A0A6H5KLZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.940e-7
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:  409 AAAMKRKRGNADLEMAAADPLQAAITSGLREGDVAPRPAKASRKST 546
            AA +KR R NADLE+AA+DP+QAAITSG R G+ APRPAKA RK T
Sbjct:   30 AAGVKRTRVNADLEVAASDPVQAAITSGPRGGEAAPRPAKAPRKPT 75
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BLAST of mRNA_P-littoralis_Contig872.25.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.600e-6
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  175 RMIKIDGADRVVKHTWKLGSRGGYVLTSVLLDKGTQRSRGAKIQDVAADNDEVIAVAKEHANKIRQRAESR 387
            R IKI G  RV+KH W++ +RG Y LTS LL KGT+ +    I  V  D + V+ +A+EH + +R+RA  R
Sbjct:    4 RDIKIAGEARVIKHRWRMHTRG-YQLTSTLLQKGTEIAATKAIGSVVDDLEGVVHMAREHVDDLRERASKR 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLZ5_9PHAE4.940e-771.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE2.600e-645.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig872contigP-littoralis_Contig872:106079..106624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791754.334967-UTR-P-littoralis_Contig872:106078..1062191680791754.334967-UTR-P-littoralis_Contig872:106078..106219Pylaiella littoralis U1_48UTRP-littoralis_Contig872 106079..106219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791754.349961-CDS-P-littoralis_Contig872:106219..1066241680791754.349961-CDS-P-littoralis_Contig872:106219..106624Pylaiella littoralis U1_48CDSP-littoralis_Contig872 106220..106624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig872.25.1prot_P-littoralis_Contig872.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig872 106220..106624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig872.25.1

>prot_P-littoralis_Contig872.25.1 ID=prot_P-littoralis_Contig872.25.1|Name=mRNA_P-littoralis_Contig872.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MADPRNPGECLRMIKIDGADRVVKHTWKLGSRGGYVLTSVLLDKGTQRSR
GAKIQDVAADNDEVIAVAKEHANKIRQRAESRQRSSASTAAAMKRKRGNA
DLEMAAADPLQAAITSGLREGDVAPRPAKASRKST
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mRNA from alignment at P-littoralis_Contig872:106079..106624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig872.25.1 ID=mRNA_P-littoralis_Contig872.25.1|Name=mRNA_P-littoralis_Contig872.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig872:106079..106624+ (Pylaiella littoralis U1_48)
CAGCAGTATCGCACGGGAATGCACTCCGCTGGGTCGAACGAAATACGTAC
AGAGGACATCGCTTAATTGGTTATCCGAGACGATCTCCATCCGCAAAGGG
TGCGCCTTTTGTGAGCCTGGGCGGGCACGCGCCAGCAACGTATGGCCGAC
CCAAGAAATCCTGGGGAATGCTTACGTATGATCAAAATCGACGGCGCGGA
CAGAGTAGTGAAGCACACATGGAAACTAGGCAGCAGGGGCGGGTATGTCC
TGACTTCTGTGCTCTTGGACAAGGGCACGCAGAGGAGTCGTGGTGCGAAG
ATCCAGGACGTTGCAGCTGACAACGATGAGGTTATCGCCGTTGCGAAGGA
GCACGCTAACAAGATTCGCCAACGAGCAGAGAGTCGCCAACGTTCTTCCG
CATCTACTGCTGCTGCTATGAAGAGAAAGCGTGGCAACGCCGACCTTGAG
ATGGCTGCAGCGGATCCTTTGCAGGCGGCGATCACCAGTGGGCTACGAGA
GGGTGATGTCGCACCACGCCCGGCGAAGGCGTCACGAAAGTCAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig872:106079..106624+

>mRNA_P-littoralis_Contig872.25.1 ID=mRNA_P-littoralis_Contig872.25.1|Name=mRNA_P-littoralis_Contig872.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig872:106079..106624+ (Pylaiella littoralis U1_48)
ATGGCCGACCCAAGAAATCCTGGGGAATGCTTACGTATGATCAAAATCGA
CGGCGCGGACAGAGTAGTGAAGCACACATGGAAACTAGGCAGCAGGGGCG
GGTATGTCCTGACTTCTGTGCTCTTGGACAAGGGCACGCAGAGGAGTCGT
GGTGCGAAGATCCAGGACGTTGCAGCTGACAACGATGAGGTTATCGCCGT
TGCGAAGGAGCACGCTAACAAGATTCGCCAACGAGCAGAGAGTCGCCAAC
GTTCTTCCGCATCTACTGCTGCTGCTATGAAGAGAAAGCGTGGCAACGCC
GACCTTGAGATGGCTGCAGCGGATCCTTTGCAGGCGGCGATCACCAGTGG
GCTACGAGAGGGTGATGTCGCACCACGCCCGGCGAAGGCGTCACGAAAGT
CAACG
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