mRNA_P-littoralis_Contig872.18.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig872.18.2
Unique NamemRNA_P-littoralis_Contig872.18.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: D8LNX4_ECTSI (ATP-dependent protease peptidase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX4_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 6.990e-120
Identity = 190/208 (91.35%), Postives = 196/208 (94.23%), Query Frame = 1 
Query:  211 AVTALPPGNLAVSKRTHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVEEDENEA 834
            A   LP G  A SKR HSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKL  G VLAGYAGSTADALTLMERLEGKLEEH+GQLMNACVALAKDWRTDKYLRRLEAVVLVAD KFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIA+ELCVYTNN+FT+HSLDVEE+E+EA
Sbjct:    5 AAAVLPFGKSAESKRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEESEA 212
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A7S2WBX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBX0_9STRA)

HSP 1 Score: 240 bits (612), Expect = 6.160e-72
Identity = 130/211 (61.61%), Postives = 161/211 (76.30%), Query Frame = 1 
Query:  190 VVVRQAVAVTALPPGNLAVSKRTHSS-ASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVEE 819
            +++RQ +A     P  L+ +  + S  A+ G   HGTTILCVRK GKVV++GDGQVSQG MVVKPNA KVR++ G  VL G+AGSTADA TL+ERLE +LEEH GQL  ACV LAK WRTDKYLRRLEAV+LVAD+  S ++TG GDVL P  G++AVGSG  YALAAARAL+   D+  E++A+K+M IAA+LCVYTN+NFTV  L+ +E
Sbjct:    1 MMMRQVLARAVRAPTGLSRAAYSASPVAADGSGRHGTTILCVRKEGKVVVIGDGQVSQGSMVVKPNAKKVRRM-GDGVLVGFAGSTADAFTLLERLEERLEEHPGQLTRACVDLAKAWRTDKYLRRLEAVLLVADKDVSFELTGNGDVLEPKDGIMAVGSGGAYALAAARALADVPDMDPEDIAQKAMTIAADLCVYTNHNFTVEVLETDE 210
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A4D9D968_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D968_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.170e-70
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1 
Query:  286 MHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTV 798
            MH TTILCVRK  KVVMMGDGQVSQG  VVKPNA KVR+L G  ++AG+AGSTAD  TLMERLE KLEEH GQL  ACV LAK WRTDKYLRRLEA +LVAD+  S ++TGLGDVL P  GVIA+GSG  +ALAAA+AL  +ED+ AE++A K+M IAAE+CVYTNNNF  
Sbjct:    1 MHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRL-GQDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVT 170
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A6G0WXK0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXK0_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.760e-69
Identity = 127/205 (61.95%), Postives = 157/205 (76.59%), Query Frame = 1 
Query:  217 TALPPGNLAVSKRTHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVEEDENE 831
            +A  PG L +  R+H S+S    MHGTTILCVRKNGKVV++GDGQVS G  +VKPNA KVR++   +V+AG+AGSTADA TL+ERLE KLEE+ GQL  ACV LAK WRTDKYLR LEA+++V D K S  +TG GDVL P+ G+I +GSG  YALAAARAL  +  LSAEEVAR+SM+IAA++C+YTN+NF +  LD E  + E
Sbjct:    8 SATRPGALPL--RSHFSSSP--TMHGTTILCVRKNGKVVVIGDGQVSLGHTIVKPNAQKVRRI-NDNVIAGFAGSTADAFTLIERLESKLEEYPGQLTRACVELAKAWRTDKYLRALEALLIVTDNKQSFTLTGNGDVLQPHDGIIGIGSGGTYALAAARALIEEPHLSAEEVARRSMKIAADICIYTNHNFVMEVLDEEAPQKE 207
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A7S2D616_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D616_9STRA)

HSP 1 Score: 234 bits (596), Expect = 2.090e-69
Identity = 129/219 (58.90%), Postives = 159/219 (72.60%), Query Frame = 1 
Query:  190 VVVRQAVAVTALPPGNLAVSKRTHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPN---GGV--IAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVEEDENE 831
            +++R+ V   A P     ++ R    A    + HGTTILCVRK GK V++GDGQVSQG +VVKPNA KVR+L GG VLAG+AGSTADA TL+ERLE +LEEH GQL  ACV LAK WRTDKYLRRLEAV+LV D K + ++TG GDVL P    GGV  + VGSG  YAL+AARAL+    + AE +ARKSME+AA++CVYTN+NF + +LD  +D  E
Sbjct:    7 MMLRRIVTAAARPSSMAGMATRAFGGAP---DWHGTTILCVRKEGKTVLIGDGQVSQGSIVVKPNAKKVRRLEGG-VLAGFAGSTADAFTLLERLEERLEEHPGQLTRACVDLAKAWRTDKYLRRLEAVLLVCDSKVAFEITGNGDVLEPRETEGGVSVMGVGSGGAYALSAARALADMPGVDAETIARKSMEVAADMCVYTNHNFVIETLDENDDGKE 221
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: W7UCI7_9STRA (Heat shock protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCI7_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.110e-69
Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:  280 LEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTV 798
            L MH TTILCVRK  KVVMMGDGQVSQG  VVKPNA KVR+L G  ++AG+AGSTAD  TLMERLE KLEEH GQL  ACV LAK WRTDKYLRRLEA +LVAD+  S ++TGLGDVL P  GVIA+GSG  +ALAAA+AL  +ED+ AE++A K+M IAAE+CVYTNNNF  
Sbjct:   80 LTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRL-GEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVT 251
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A6N6VI23_9HYPH (ATP-dependent protease subunit HslV n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VI23_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 2.520e-69
Identity = 122/186 (65.59%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:  256 THSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDV 813
            THSS  +    HGTTIL VRK GKVV+ GDGQVS GD V+K NA KVR L  G+V+AG+AG+TADA+TL ERLEGKLE++ GQL  ACV LAKDWRTD++LRRLEA+++VAD   SL +TG GDVL P GG++ +GSG  YALAAARAL+  E LSAEE+ARK+++IA+E+CVYTNNN TV  LD 
Sbjct:    4 THSSPYA--TWHGTTILTVRKGGKVVVAGDGQVSMGDTVMKGNARKVRPLGSGNVIAGFAGATADAMTLFERLEGKLEQYPGQLTRACVELAKDWRTDRFLRRLEALMIVADAHVSLVLTGNGDVLEPEGGIVGIGSGGNYALAAARALADTE-LSAEEIARKALKIASEICVYTNNNLTVEILDA 186
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A2D2B375_9CAUL (ATP-dependent protease subunit HslV n=1 Tax=Caulobacter mirabilis TaxID=69666 RepID=A0A2D2B375_9CAUL)

HSP 1 Score: 231 bits (590), Expect = 3.090e-69
Identity = 122/181 (67.40%), Postives = 143/181 (79.01%), Query Frame = 1 
Query:  265 SASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSL 807
            +A+S  + HGTTIL VRKNGK V+ GDGQVS G  VVK NA KVR LAGG V+AG+AG+TADA TL+ERLE KLE+  GQL  ACV LAKDWRTD+YLRRLEA++LVAD+     VTG+GDVL P  GV A+GSG  YALAAARAL+   DLSAEEVAR++M IAA++CVYTN + TV SL
Sbjct:    3 NATSFPDWHGTTILAVRKNGKTVVAGDGQVSMGQTVVKGNAKKVRTLAGGKVIAGFAGATADAFTLIERLEAKLEQFPGQLARACVELAKDWRTDRYLRRLEAMLLVADETAIYTVTGVGDVLEPESGVAAIGSGGNYALAAARALAENTDLSAEEVARRAMGIAADICVYTNGSLTVESL 183
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BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A858R2W4_9PROT (ATP-dependent protease subunit HslV n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R2W4_9PROT)

HSP 1 Score: 230 bits (587), Expect = 9.470e-69
Identity = 113/176 (64.20%), Postives = 143/176 (81.25%), Query Frame = 1 
Query:  280 LEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSL 807
            ++ HGTTI+CVRK G+VV+ GDGQVS G  V+K NA KVR+LAGGSV+AG+AG+TADA  L ERLE KLE+H GQL  A V +AKDWRTD+YLRRLEA++ VAD+  SL +TG GDVL P  G+IA+GSG  YALAAARAL+ +ED+ AE +ARK+M+IAA++CVYTNN+ T+  +
Sbjct:   11 IQWHGTTIICVRKGGQVVIAGDGQVSMGQTVMKSNAKKVRRLAGGSVMAGFAGATADAFALFERLEAKLEQHPGQLTRAAVEMAKDWRTDRYLRRLEAMMAVADRDVSLVITGNGDVLEPEDGIIAIGSGGNYALAAARALADREDMDAEAIARKAMKIAADICVYTNNSLTLEKI 186
[Close]
BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Match: A0A485LKE5_9STRA (Aste57867_22011 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LKE5_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.020e-68
Identity = 122/184 (66.30%), Postives = 145/184 (78.80%), Query Frame = 1 
Query:  265 SASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVALAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVE 816
            S SS   MHGTTILCVRKNGKVV++GDGQVS G  +VKPNA KVR++   +V+AG+AGSTADA TL+ERLE KLEE+ GQL  ACV LAK WRTDKYLR LEA+++V D K S  +TG GDVL P+ G+I +GSG  YALAAARAL  +  LSAEEVAR+SM+IAA++CVYTN+N  V  LD E
Sbjct:   20 SFSSAPTMHGTTILCVRKNGKVVVIGDGQVSLGHTIVKPNAQKVRRI-NENVIAGFAGSTADAFTLIERLESKLEEYPGQLTRACVELAKAWRTDKYLRALEALLIVTDNKQSFTLTGNGDVLQPHDGIIGIGSGGTYALAAARALIDEPHLSAEEVARRSMKIAADICVYTNHNVVVEVLDEE 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX4_ECTSI6.990e-12091.35ATP-dependent protease peptidase subunit n=2 Tax=E... [more]
A0A7S2WBX0_9STRA6.160e-7261.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D968_9STRA4.170e-7070.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6G0WXK0_9STRA1.760e-6961.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2D616_9STRA2.090e-6958.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7UCI7_9STRA2.110e-6970.52Heat shock protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A6N6VI23_9HYPH2.520e-6965.59ATP-dependent protease subunit HslV n=1 Tax=Parvib... [more]
A0A2D2B375_9CAUL3.090e-6967.40ATP-dependent protease subunit HslV n=1 Tax=Caulob... [more]
A0A858R2W4_9PROT9.470e-6964.20ATP-dependent protease subunit HslV n=1 Tax=Rhodos... [more]
A0A485LKE5_9STRA2.020e-6866.30Aste57867_22011 protein n=5 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig872contigP-littoralis_Contig872:72179..78339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNX4
Preferred nameHslV
PFAMsProteasome
Model size1858
Max annot lvl2759|Eukaryota
KEGG koko:K01419
Hectar predicted targeting categorymitochondrion
GOsGO:0000002,GO:0000266,GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006508,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009295,GO:0009376,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031597,GO:0031974,GO:0032042,GO:0032991,GO:0033955,GO:0034641,GO:0034645,GO:0042623,GO:0042645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0070011,GO:0070013,GO:0070581,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1902494,GO:1904949,GO:1905368,GO:1905369
Exons9
Evalue1.61e-125
EggNOG OGsCOG5405@1|root,2RS9W@2759|Eukaryota
Ec32 ortholog descriptionATP-dependent protease, HslV subunit
Ec32 orthologEc-08_005470.1
EC3.4.25.2
DescriptionProteasome subunit
Cds size762
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig872.18.2prot_P-littoralis_Contig872.18.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig872 73200..77457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791753.6925771-UTR-P-littoralis_Contig872:72178..731991680791753.6925771-UTR-P-littoralis_Contig872:72178..73199Pylaiella littoralis U1_48UTRP-littoralis_Contig872 72179..73199 -
1680791753.8142867-UTR-P-littoralis_Contig872:77457..774861680791753.8142867-UTR-P-littoralis_Contig872:77457..77486Pylaiella littoralis U1_48UTRP-littoralis_Contig872 77458..77486 -
1680791753.824728-UTR-P-littoralis_Contig872:78293..783391680791753.824728-UTR-P-littoralis_Contig872:78293..78339Pylaiella littoralis U1_48UTRP-littoralis_Contig872 78294..78339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791753.7158515-CDS-P-littoralis_Contig872:73199..732831680791753.7158515-CDS-P-littoralis_Contig872:73199..73283Pylaiella littoralis U1_48CDSP-littoralis_Contig872 73200..73283 -
1680791753.7279496-CDS-P-littoralis_Contig872:73607..736751680791753.7279496-CDS-P-littoralis_Contig872:73607..73675Pylaiella littoralis U1_48CDSP-littoralis_Contig872 73608..73675 -
1680791753.738004-CDS-P-littoralis_Contig872:74097..741271680791753.738004-CDS-P-littoralis_Contig872:74097..74127Pylaiella littoralis U1_48CDSP-littoralis_Contig872 74098..74127 -
1680791753.752375-CDS-P-littoralis_Contig872:74731..748161680791753.752375-CDS-P-littoralis_Contig872:74731..74816Pylaiella littoralis U1_48CDSP-littoralis_Contig872 74732..74816 -
1680791753.766368-CDS-P-littoralis_Contig872:75374..754451680791753.766368-CDS-P-littoralis_Contig872:75374..75445Pylaiella littoralis U1_48CDSP-littoralis_Contig872 75375..75445 -
1680791753.7827597-CDS-P-littoralis_Contig872:75874..760431680791753.7827597-CDS-P-littoralis_Contig872:75874..76043Pylaiella littoralis U1_48CDSP-littoralis_Contig872 75875..76043 -
1680791753.7939553-CDS-P-littoralis_Contig872:76617..766711680791753.7939553-CDS-P-littoralis_Contig872:76617..76671Pylaiella littoralis U1_48CDSP-littoralis_Contig872 76618..76671 -
1680791753.8036215-CDS-P-littoralis_Contig872:77256..774571680791753.8036215-CDS-P-littoralis_Contig872:77256..77457Pylaiella littoralis U1_48CDSP-littoralis_Contig872 77257..77457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig872.18.2

>prot_P-littoralis_Contig872.18.2 ID=prot_P-littoralis_Contig872.18.2|Name=mRNA_P-littoralis_Contig872.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MLGLLGRARTTAVRSFAPAGSAAAAAGVDATLMARQGGVVVRQAVAVTAL
PPGNLAVSKRTHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVV
KPNATKVRKLAGGSVLAGYAGSTADALTLMERLEGKLEEHDGQLMNACVA
LAKDWRTDKYLRRLEAVVLVADQKFSLKVTGLGDVLAPNGGVIAVGSGQP
YALAAARALSGQEDLSAEEVARKSMEIAAELCVYTNNNFTVHSLDVEEDE
NEA*
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mRNA from alignment at P-littoralis_Contig872:72179..78339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig872.18.2 ID=mRNA_P-littoralis_Contig872.18.2|Name=mRNA_P-littoralis_Contig872.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6161bp|location=Sequence derived from alignment at P-littoralis_Contig872:72179..78339- (Pylaiella littoralis U1_48)
TTGACTTACCTCTTTGTCGTCCCGCAACCAGCAAGTGAGGCCAGATGTGA
GTTCTACAGCACATGGGGGAGGCGAATACACCTAGCTACGGTTTGTGCAG
TAGGACCTGAAGTGTACTTCGAGTATGAGGTTGTAGTCATGCCTTCCTCA
ATTCTTCAGGAACACAGCAGTAGCAGCAACGAAGCAGCAGCTAATAAAGC
TTGACTCAGCAACACTGGCCGCACTACAGCCAGCCTAACGGCGTCGTTGA
CGCAACAGCGATGTCCCGAGGTTGTCGCCGCTGTACCTTGCTGTTCCGTG
TTATTCTGTGCAGATCCAACGGTTGCCCATGGTTAGAAGGAAAAACAGAC
CCCACACTGTCTGTGTTCTGTACCCACATCTAGTTGAGCAGCGAACAGCG
GCAAAACCAAACAGCTGGAATGCAACTATAATACCATGCTGTCTGTACTC
TGTCGTACCTCAGGTAGTTCCTCCACTTGCCATTCGTTGGCCATCCCACA
TGTCCAGCAGGACTCCGCCCTAAACATGACTATTTGAAAGGACGATAATT
GCACGGCATCATCAACCCCTCTTTTATGTATGACCGTTTTATTCTTGATG
CCAGGTACTTGCTGACTGCCTGCCCCGTGTCTTACCGTATGATATCATAG
TTGTAGGGTATCGTATAGTATTACTCCGTATTATCTACTTTTAGAGAGCG
GTTACCGCCGAAGCCACGATTGGCTTTCTAGCAGGAGCACAGCCACATCG
CCAGCGTGTTCAGCTTCTTTCCTGCGCCAGCTTCTTACTATGCTCTTTCC
TCACGGTGTCGTGATTCACGGGTCAACATGTCGTTCATGCTCCCTGCACC
CAGTTCCCATATTCTCGCCGACTAGCAGCGTCATGTTGGGATTGTTGGGA
AGGGCGAGAACAACCGCGGTGCGGTCATTCGCACCGGCAGGATCGGCAGC
GGCAGCGGCAGGGGTTGATGCCACCTTGATGGCAAGACAAGGGGGCGTGG
TGGTGAGACAGGCCGTGGCAGTGACGGCGCTTCCACCCGGAAATCTGGCC
GTGAGCAAGAGGACGCACAGCTCGGCGTCGTCGGTGAGAAGTTATTAATG
TGCTGCTGCGAACCGTATTTGCCTGGAACATTGCAGGTTGTCCATGTATA
CGAGTAGATAGTGGAAAGGGTTAGTGAGGGAGGCTATAGCATTACAGGCT
TTCGTACAAGTAGGTTGCGGACAATGTTCGTCAGTTTCGCTGCGGTAGGA
AGCTCGTCAATTCGTCAATTCTAGCTACGGTCGTTCAGGTTTTAGGGCCC
CAAGTTAAGAACAACACTGCGAAGTGACACCAGATCGTGGGGGCGTTCAG
GTTTTGGGGGCCCCAAGTTTAGAACAACACTGCGAAGTGGCACCAAATCG
TGAGCTTCGCTGCTGCTTTGTGCCGCCCCCCCTACCCCCTACCCAAATGG
AACGCATGTTGAATTCCAGCAGGTTTTTTTTTTTTCTGATAGATGGATAT
GCCTTGATAGAACGCTCTGCAATCTACAGCATGATGTGGTTTTCCTGCCA
ACACCTATTTGGTTTAGACAACGATGCTCTAGATTGCTGTGCAGTTGTTC
AAACCCCCCTTGTTACCCACTTCGTGCCCTGCTTTGACGCCCCGCCCCCC
TTTTCTTTGGGAGCCCAGGGCCTTGAGATGCATGGCACCACCATCTTGTG
CGTCCGCAAAAACGGGAAGGTGGTGAGTACAACACCCGTTCTCGCTGTCG
GCAGAGTACGTTTGACAATCCGTCCAGTCCCTCTGCAGCAGTGTATGCAT
ACATACAGCTAGTGTACTGTGCACGTGGCGAGCGATATTTCGGGTTATTT
GTTGGGTTTTCATGTTTTTGGGCATGTTGTACCGTCTTGATATAATTCTC
GGCGGCGGTTGGGGACTTGACTAATTGTTGTCGATGTTGTGGCGTGTATG
TGATTTATTGTCGATGTTGTGGCGTGTGGAGTCCCCCTGCTGGATGGAAT
TTACAAATTGCCGACAACGGGTCGCTGCGAAGACACCGTGTCGCACAGAG
TGCACCCGGTCACTGCTCCCCTCACATAGTGGACATGCCATGATAGTTCC
CGGGCAAACCGTTCGCGCTCTCAACAAGGTTGCTGATCGTTTCGTGCTCC
CATCCGGAGTAGTACAGCAGTCGTATGCGGTATAAATACATGTTTCCATA
CCAAATACTTCGTATTTTTGTATCTCAACGATAGATTTTCCGCGTGCTGC
AGAGGCTCATAAATCAACATCTTCAGCAACTGCTCTTGAGTTTCAGGTGA
TGATGGGGGACGGGCAAGTGAGCCAGGGAGACATGGTGGTTAAGCCCAAC
GCGACTAAGGTGCGGAAGCTGGCGGGTGGAAGCGTGCTGGCGGGGTACGC
CGGGTCCACAGCCGACGCCTTGACCCTCATGGAACGGCTCGAGGGAAAGC
TCGAGGAGCACGACGGTAAGGGACGGACCAGGCGCGGTAAAAACCTTTGG
AACCGTGGTAACGTCGTTGTGGCGGAAGAAACTCGTAACCGGAGTCATTG
CAAGGAATGAATAAAATATATTTGATGTCGAGCGCCATGCATGGAGAGAG
GGAGTCGAGGCTCGGGATACTAACTTCACTTGAGGAGAGAGATGGACTAG
AATCTTCAGAGAGGTCGTCTGCGACAGGTTTTCTTTCAGTCGCGTTTTCT
CGGCTCTGTACGCCGAAGTCGGCAAGAGTGATGGGCCCAAAGAAGATGGC
GAGACGTTTGCGCTGACTGCGACGATACTGTACGTTACGCAGCGACCAGA
CCACCCCGATGCACCTCTGAGATGACTGCGCCCGCCGGCGAGTCCTCACC
GGGCGTACGTTTGTATTTTTCCAACTGTCGTCTGCCGCACGCAGGACAAC
TCATGAACGCGTGTGTTGCCCTGGCCAAAGACTGGAGGACGGACAAGTAC
CTCCGCCGACTGGAGGTGAGGTGACTCGCTCTGCGTGGGTAGCGGCAGCT
AGTGCGTGGGAAGCCGCCGCTAGTGCGTGGGAAGCCGTCCCTACTCTATC
AAGCATTGCTTTGCGTGGGTTCGTTCTTGCGGGAGGCAATGGTGTGAAGT
GCGAGGAAGAGCTCATCGGGCGATGGTGTGGCCGTTTGTGGCGGCTTCGT
GCAGCTCTGGTCATCCGTGCTTTGATGGCGTGTTTTCTGCACGTGTCGAT
CGGTCGACGGTCCTCGGTATCTTTATCCGCCACTCCCGAATGTTTCACCC
CAATTAAGTCTCCAGCCAAGGTTCTCGTACGTGCAGCACTCTCAGCCGGT
CTGGTGGGGAAGAGAGAGCACGTGGAGTCCTGGGTACAATCAACGCCGTG
TCGTTCTTGGCTGTGGTTGTTTTGCCTGAGAATTGTCGCATGTTCCACGC
TTGTTGCGCGCGCTCCAGTGTCACGGTGGTGGTTTGATGTAATGTTGTCG
TAATTCGGCGTGAGCTGGTGCCCTCTTATTGTTTCTGCACGTTCCTCCAT
GTGTCTGTTGCTGCTAAATGCAGGCGGTCGTACTAGTGGCAGACCAAAAA
TTCTCCCTGAAGGTCACGGGATTAGGAGATGTCCTCGCACCGAACGGAGG
AGTAATTGGTGAGCACAACATCCAAACACATGGTCGTAGCAACATTTTGG
CTCACCTCATCGTGCCTAGCAGTATAGCGTATATCGAGTTGCCGGTATTG
TTTGCGGCAATGGTTCTACCGCTTCCCTTGAATTTTGATGTTGAAATCTG
AAATTTGTTACTGCAGCAATGAAGCACAGTCAGACATTCTGCGTAGTCCG
TCTTCGAGCTGGGTCCGCTCCCCACTGCGCGCTTCCCTTACGGAATGGTT
GTTTGAAGACCACGTACTTTACGAATTACACGTTATCAGTGCCCACGTCA
CGGTGTACTTGGTAGCTAGACTTCAGCTTCGCCTCTCCCGACCTAGCTCG
GGGTATGTTGCGAATGCCGCGACGACAGGGCCGTTCGTTCGGTTGTAGAG
GTTCGATGCCCCTTCTAATTCATCTCCCGGAGATACACCGGGACGGATGC
ACATTTTCTAGCAGCCGAGCTCGTGACAGACGCTCCTTGGGGTCTCCTTG
GCTACTCTAATTTTGCCTTTTTCGAACTGTTCCTGCGTGCTGCGGTGCCT
TGCGCTGCCGCTCGTCGTCGCGCGTCCTCACGTGCCGCACTGCCGTGGCT
CAACGCTGACAGCTGTGGGATCGGGCCAACCTTACGCCCTAGGTGAGAGA
TAGAATGTCATCGACTGATACGGGATGGTCCTTTAGCTCAAGGCTGAGCG
AGTGTGCGGTGTGCAGCGACGTGTTGTCTTACCTACGAAAGCTCCGCGGT
TCGCCGCGACATGCTCCTATACAGAGTAAAAGGATGATGAGGTTGTACAC
TGATGTTCCGTTCATAGAGCAGACCTAAAAACACAATATCTGTACTAGAA
GCCCTTATTCCTCCTCATGTTTTTTGTGTCGCACGGGGAGACAAGGCGAC
GACACCATCCGCGATGCACATCGTCCGCATGATCACGTCACGTATTGATG
CCGAGTTCCCTCGCGTTCCCTCCTGGACTGCGGCCTGAAAATCTCGTCGC
TACCCCTGTCGCTGTTGCCACCCTCTTGCCGCCACCCCCCTACTCGCCAA
TCTATGATTTCCAGCGGCCGCACGGGCTCTCTCTGGGCAAGAAGACTTGA
GCGCCGAGGAAGTGGCCCGAAAGTCAATGGAGGTACGTGCTGATGTTGGT
GATAAGAGTGGCCACCGTACGAGGTCATCGCGCGTTTCGGCAAACCCCGG
ATGGTATTGCACAGCGGTTGCCCACACGAATGCCGCGAAAATCGTGTTGG
GCGTTTCCATCTTTTGTACACGTGTGGTCACGTATTGACATGACATGAAG
TCCGTAGGCAGACGCTTTGCTCTTGGGGGAGGTTGTTGCTTCACGTGTGA
AGAGAAAATGGACGCATCATTCGCTGATTTTATTAAGAGAACCCCCTCAC
CCCCCACCCCTAACGGCGCCCGCACATCCACACTACTCGCGGCTCTGGGC
TGGCAGATCGCGGCAGAGCTGTGCGTCTACACCAACAACAACTTCACCGT
GCACTCGCTGGACGTCGAAGAGGACGAGAACGAGGCATGAGATGGTCCAA
CTGGGGGAAGAATGGCAAAGGGCTACAATGTAGGCCTCCCGACAAGATCA
GGAAAGCGTGGGGTGTGCTCCTCTGGGCCGGTTCAGACAGAAGTCCTTGC
TTACGCACCTGTTGCGAGGCCGTGCGCGAGATCGGGGCGCGACGACGAAG
AAGGGGGGTGTCCTGTCTGGGCGTTTGCAAGCGCTTCGCGATCTCCAAAC
GCGTTCCGACGGATTTTAATTGAAATTGTGATTTGCTCTGGGCGCGTTTG
TACTGTCATTGAGTCACCGTAGGGAACAGCGTCGAACATACCACATCTTG
TAGAGCGGCGAACAGCACGGGGTGAGCAGCTTTCCCCCCCTTTAATATCA
ACGGCACCGGTCTACGCTGCATGTACGTGACGGACGTGTTCATTATTTGC
GTTGTTGGTGCATTGATTAGGCTGGAACTGCCTGCGGGGCAAGCCGCCGA
GGGTACAACTGAACGAAATGAACGTGCTACCGCTGAAGCAAGCAGGGATA
CCGCTGTAGCACTAAGCGGTTAAGATCAGATGAGTTTAAGTAACTCTTCT
GGGTATAGGGCTGCCGTTAATCAAGCAAGTTGATGCACTTTGCCCTTGAT
CCCTTTTGACACGAGAAAAAAGCACACACAGTCAAATGTCTTTTATCGAA
ACAGTCGTGTGTGGGCCAACAACAATGAAGGAAGGGATTGGCCGTGATTT
CGTTTCTGGGCCTGACATCTCTGTCATTGAGTTTTGTTTGTCAAAATGGC
GTGATATTGATAACCTGAAAATAAATTCATGTCTGTCCACATGCGATACA
TTCGACTGCGGTGGGTTGGCTTCTCTAAGCAGATAACATCATAGAAAACA
TGGCAAGTTGGCGAGAAATGAACGTATTCGACCTTGTCCGTAGATGTGAC
AGTCGCGACTCTTTTGTGAACCTGGCAGTCGGCGGAGAGAGCGCCGTCAC
GCTCCATTCTCAACGCACTACCCAACCCATACCACACTTTTTCTTAAAGC
TTTTTTGGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig872:72179..78339-

>mRNA_P-littoralis_Contig872.18.2 ID=mRNA_P-littoralis_Contig872.18.2|Name=mRNA_P-littoralis_Contig872.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig872:72179..78339- (Pylaiella littoralis U1_48)
ATGTTGGGATTGTTGGGAAGGGCGAGAACAACCGCGGTGCGGTCATTCGC
ACCGGCAGGATCGGCAGCGGCAGCGGCAGGGGTTGATGCCACCTTGATGG
CAAGACAAGGGGGCGTGGTGGTGAGACAGGCCGTGGCAGTGACGGCGCTT
CCACCCGGAAATCTGGCCGTGAGCAAGAGGACGCACAGCTCGGCGTCGTC
GGGCCTTGAGATGCATGGCACCACCATCTTGTGCGTCCGCAAAAACGGGA
AGGTGGTGATGATGGGGGACGGGCAAGTGAGCCAGGGAGACATGGTGGTT
AAGCCCAACGCGACTAAGGTGCGGAAGCTGGCGGGTGGAAGCGTGCTGGC
GGGGTACGCCGGGTCCACAGCCGACGCCTTGACCCTCATGGAACGGCTCG
AGGGAAAGCTCGAGGAGCACGACGGACAACTCATGAACGCGTGTGTTGCC
CTGGCCAAAGACTGGAGGACGGACAAGTACCTCCGCCGACTGGAGGCGGT
CGTACTAGTGGCAGACCAAAAATTCTCCCTGAAGGTCACGGGATTAGGAG
ATGTCCTCGCACCGAACGGAGGAGTAATTGCTGTGGGATCGGGCCAACCT
TACGCCCTAGCGGCCGCACGGGCTCTCTCTGGGCAAGAAGACTTGAGCGC
CGAGGAAGTGGCCCGAAAGTCAATGGAGATCGCGGCAGAGCTGTGCGTCT
ACACCAACAACAACTTCACCGTGCACTCGCTGGACGTCGAAGAGGACGAG
AACGAGGCATGA
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