mRNA_P-littoralis_Contig872.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig872.10.1
Unique NamemRNA_P-littoralis_Contig872.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig872contigP-littoralis_Contig872:39599..39922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791752.5776007-UTR-P-littoralis_Contig872:39598..396131680791752.5776007-UTR-P-littoralis_Contig872:39598..39613Pylaiella littoralis U1_48UTRP-littoralis_Contig872 39599..39613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791752.587821-CDS-P-littoralis_Contig872:39613..399221680791752.587821-CDS-P-littoralis_Contig872:39613..39922Pylaiella littoralis U1_48CDSP-littoralis_Contig872 39614..39922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig872.10.1prot_P-littoralis_Contig872.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig872 39614..39922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig872.10.1

>prot_P-littoralis_Contig872.10.1 ID=prot_P-littoralis_Contig872.10.1|Name=mRNA_P-littoralis_Contig872.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MWLPSSSHRTTRLSGSGRPAMVQQQPLQQRMNVSGGYNGMSATSGDGCGG
SLGGGRGRMSIPQRYNRTRERQDINSAGGGGGGGGGGGGSGSGVGRRANR
HRN
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mRNA from alignment at P-littoralis_Contig872:39599..39922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig872.10.1 ID=mRNA_P-littoralis_Contig872.10.1|Name=mRNA_P-littoralis_Contig872.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig872:39599..39922+ (Pylaiella littoralis U1_48)
GCAGGAGGGGGAAGCATGTGGCTCCCGTCCTCATCCCACCGCACCACCAG
ACTCTCAGGGTCGGGACGACCAGCCATGGTCCAGCAGCAGCCCCTCCAGC
AACGTATGAATGTATCCGGCGGGTACAACGGCATGTCTGCGACCAGCGGG
GACGGGTGCGGGGGCAGCCTTGGCGGCGGCCGCGGAAGAATGTCGATTCC
GCAGCGATACAACCGAACTAGAGAACGGCAGGATATTAATTCGGCGGGGG
GTGGCGGCGGCGGCGGCGGCGGCGGTGGCGGTAGCGGCTCCGGCGTGGGG
CGGCGAGCAAATAGACATCGAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig872:39599..39922+

>mRNA_P-littoralis_Contig872.10.1 ID=mRNA_P-littoralis_Contig872.10.1|Name=mRNA_P-littoralis_Contig872.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig872:39599..39922+ (Pylaiella littoralis U1_48)
ATGTGGCTCCCGTCCTCATCCCACCGCACCACCAGACTCTCAGGGTCGGG
ACGACCAGCCATGGTCCAGCAGCAGCCCCTCCAGCAACGTATGAATGTAT
CCGGCGGGTACAACGGCATGTCTGCGACCAGCGGGGACGGGTGCGGGGGC
AGCCTTGGCGGCGGCCGCGGAAGAATGTCGATTCCGCAGCGATACAACCG
AACTAGAGAACGGCAGGATATTAATTCGGCGGGGGGTGGCGGCGGCGGCG
GCGGCGGCGGTGGCGGTAGCGGCTCCGGCGTGGGGCGGCGAGCAAATAGA
CATCGAAAC
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