mRNA_P-littoralis_Contig871.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig871.18.1
Unique NamemRNA_P-littoralis_Contig871.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A6H5JBC4_9PHAE (Casein kinase II subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC4_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 2.920e-116
Identity = 179/230 (77.83%), Postives = 205/230 (89.13%), Query Frame = 1 
Query:   55 MSDTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEASHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHPSHAAQGVDGAYFGTTFPHLFFMTYKGLVPDPPEKTFVPRVFGFRVYARDPSGGDTAASGQGEHNEQRLQERRRLRRPH--PPQSP 738
            MSD+SSSDGED WI  FCGLEG+EMFCEID+ YIED+FNL+GLRH+VP INDSLD+ILDR ++NEASHEL++AT ALYGLIHARYVLT AGLEAMYAKYTLQEFGNCPHFLC+RQ VVPLG++DEPHIETVKL+CPKCQ+VYVHPSHAAQ VDGAYFGTTFPHLFFMTY  LVPDP +KTFVPRVFGFRV++  P+G    AS  G+H++QRLQER+RLRR +  PP+ P
Sbjct:    1 MSDSSSSDGEDTWIQWFCGLEGHEMFCEIDRGYIEDAFNLYGLRHFVPRINDSLDLILDRTAQNEASHELMEATCALYGLIHARYVLTAAGLEAMYAKYTLQEFGNCPHFLCKRQSVVPLGVRDEPHIETVKLYCPKCQNVYVHPSHAAQRVDGAYFGTTFPHLFFMTYGTLVPDPLDKTFVPRVFGFRVHSTAPNG----ASASGDHHDQRLQERKRLRRANLPPPKEP 226
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: D8LK36_ECTSI (Casein kinase II subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK36_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.760e-85
Identity = 128/166 (77.11%), Postives = 148/166 (89.16%), Query Frame = 1 
Query:   55 MSDTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEASHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHPSHAAQGVDGAYFGTTFPHLFF 552
            MSD+SSSDGED WI  FCGLEG+EMFCEID+ YIED+FNL+GLRH+VP INDSLD+ILDR ++NEASHEL++AT ALYGLIHARYVLT AGLEAMYAKYTLQEFGNCPHFLC+ Q VVPLG++DEPHIETVKL+CPKCQDVYVHPSHAAQ    + FG+++ H  +
Sbjct:    1 MSDSSSSDGEDTWIQWFCGLEGHEMFCEIDRGYIEDAFNLYGLRHFVPRINDSLDLILDRTAQNEASHELMEATCALYGLIHARYVLTAAGLEAMYAKYTLQEFGNCPHFLCKGQSVVPLGVRDEPHIETVKLYCPKCQDVYVHPSHAAQ----SEFGSSWHHQLY 162
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A835ZJS8_9STRA (Casein kinase II subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS8_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.640e-73
Identity = 119/203 (58.62%), Postives = 152/203 (74.88%), Query Frame = 1 
Query:   55 MSDTSSS-DGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEASHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVH--PSHAAQGVDGAYFGTTFPHLFFMTYKGLVPDPPEKTFVPRVFGFRVYARDPSGGDT 654
            MS+TSS+ DGED+W+  FC L+G+EMFCE+D+SYIED FNL+GLR +VPNI + LD+ILDRV   ++  +LLQ++  LYGLIHARY++TT GLEAM  K+ +Q+FG CP  LCR   VVP+G++DEP +E VKLFCP CQDVY    PS     +DGAYFGTTF HLF MTY+   P   E  +VPR+FGFR++ R+ S  DT
Sbjct:    1 MSETSSTGDGEDSWVQWFCSLQGHEMFCEVDRSYIEDGFNLYGLRQYVPNITECLDIILDRVGPEDSDEDLLQSSYMLYGLIHARYIITTNGLEAMRKKHAMQDFGCCPRMLCRASAVVPIGMRDEPKLEGVKLFCPSCQDVYAPWAPSSPQAQLDGAYFGTTFAHLFCMTYEITAPTAKE-LYVPRIFGFRIH-REASSTDT 201
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A6V1P2G8_HETAK (Casein kinase II subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2G8_HETAK)

HSP 1 Score: 232 bits (591), Expect = 3.280e-65
Identity = 106/207 (51.21%), Postives = 143/207 (69.08%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEASHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHPSHAA-QGVDGAYFGTTFPHLFFMTYKGLVPDPPEKTFVPRVFGFRVY-----ARDPSGGDTAAS 663
            +  SSDGE+ W+  FC L+GNEM CE+D+SYIED FNL+GLR  VPN  + LD+ILD   ++     + QA   LYGLIHAR++ T+ GLE MY KY   +FG CP  LC+ Q VVP G+ D P+ E VK++CPKC  VY  P++   QG+DG++FGTTFPHLFF+T+  L+P+P  +T++PRVFGF+++     AR P+    A S
Sbjct:    5 EVESSDGEELWVEWFCNLDGNEMLCEVDRSYIEDGFNLYGLRQHVPNFQNVLDIILDNSVDDNLDPMMAQAAYLLYGLIHARFITTSRGLEVMYKKYRTGDFGRCPRMLCKDQFVVPAGIYDHPNKEKVKVYCPKCGQVYGVPTNPGEQGLDGSFFGTTFPHLFFLTFNRLIPEPCTETYIPRVFGFKIHPSAKCARQPASQPAAQS 211
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A448YXJ5_9STRA (Casein kinase II subunit beta n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXJ5_9STRA)

HSP 1 Score: 229 bits (584), Expect = 9.670e-65
Identity = 120/217 (55.30%), Postives = 152/217 (70.05%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHP------SH----AAQGVDGAYFGTTFPHLFFMTYKGLVPDP--PEKTFVPRVFGFRVY--ARDPSGGDTAAS 663
            D+S+S  ++ WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T  GL+AMY KY  +EFG CP   C  QPV+P+GL+DE   +TVK+FCPKCQ VY  P      SH     A GVDGA FGTTFPHLF MT+  LVPDP   +  +VPRVFGFRV+  AR  + G + AS
Sbjct:    6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSRSSHHGPAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPADSAYVPRVFGFRVHMSARQRTIGGSNAS 221
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A1E7FEH7_9STRA (Casein kinase II subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEH7_9STRA)

HSP 1 Score: 228 bits (582), Expect = 5.060e-64
Identity = 118/216 (54.63%), Postives = 150/216 (69.44%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHP------SH----AAQGVDGAYFGTTFPHLFFMTYKGLVPDP--PEKTFVPRVFGFRVY--ARDPSGGDTAA 660
            D+S+S  ++ WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T  GL+AMY KY  +EFG CP   C  QPV+P+GL+DE   +TVK+FCPKCQ VY  P      SH     A GVDGA FGTTFPHLF MT+  LVPDP   +  ++PRVFGFRV+   R  +G  T A
Sbjct:    6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSRSSHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPQDSAYIPRVFGFRVHISTRQRAGVTTTA 220
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A7S1ZP41_TRICV (Casein kinase II subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZP41_TRICV)

HSP 1 Score: 229 bits (584), Expect = 6.190e-64
Identity = 115/207 (55.56%), Postives = 145/207 (70.05%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHP------SHAAQG--------VDGAYFGTTFPHLFFMTYKGLVPDP--PEKTFVPRVFGFRVY 627
            D+S+S  ++ WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T  GL+AMY KY  +EFG CP   C  QPV+P+GL+DE  ++TVK+FCPKCQ VY  P      SH   G        VDGA FGTTFPHLF MT+  LVPDP  P   +VPRVFGFRV+
Sbjct:    6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRACVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITAHGLDAMYNKYAAKEFGTCPLIQCNGQPVLPVGLKDEMGVDTVKIFCPKCQCVYHPPPIRSRSSHHGPGGSAAGSGAVDGAAFGTTFPHLFLMTFNNLVPDPLDPASAYVPRVFGFRVH 211
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BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A7S3PD94_9STRA (Casein kinase II subunit beta n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD94_9STRA)

HSP 1 Score: 230 bits (587), Expect = 7.950e-64
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 1 
Query:   52 AMSDTSSSDGEDN-WIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHP-----SHAAQGVDGAYFGTTFPHLFFMTYKGLVPDP--PEKTFVPRVFGFRVY 627
            A ++ SS+ G D  WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T  GL+AMY KY  ++FG CP   C  QPV+P+GL+DE  ++TVK+FCPKC  VY  P     ++ + GVDGA FGTTFPHLF MT+  LVPDP   E ++VPRVFGFRV+
Sbjct:   60 AFNEDSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRACVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITAHGLDAMYNKYAAKDFGTCPLVQCSGQPVLPVGLKDEMGVDTVKIFCPKCTQVYHTPPLRSRANVSTGVDGAAFGTTFPHLFLMTFSNLVPDPLPVESSYVPRVFGFRVH 260
[Close]
BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A7S0Y7J2_9STRA (Casein kinase II subunit beta (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7J2_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.120e-63
Identity = 112/201 (55.72%), Postives = 143/201 (71.14%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYV--------HPSHAAQGVDGAYFGTTFPHLFFMTYKGLVPDPPEK--TFVPRVFGFRVY 627
            D+S+S  ++ WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T+ GL+AMY KY  +EFG CP   C  QPV+P GL+DE   +TVK+FCPKCQ V+         H    A GVDGA FGTTFPHLF MT+  LVPDP  K   ++PRVFGFRV+
Sbjct:   22 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITSHGLDAMYNKYASKEFGTCPLVQCAGQPVLPCGLKDEMGADTVKIFCPKCQCVFHPPPVRSRHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPKDSAYIPRVFGFRVH 221
[Close]
BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Match: A0A7R9W3V5_9STRA (Casein kinase II subunit beta (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3V5_9STRA)

HSP 1 Score: 227 bits (579), Expect = 3.060e-63
Identity = 114/207 (55.07%), Postives = 145/207 (70.05%), Query Frame = 1 
Query:   61 DTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNINDSLDVILDRVSENEA--SHELLQATGALYGLIHARYVLTTAGLEAMYAKYTLQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHP------SHAAQG--------VDGAYFGTTFPHLFFMTYKGLVPDP--PEKTFVPRVFGFRVY 627
            D+S+S  ++ WI  FCGL+G+EMFCE+++SYIED FNL+GLR  V N +D LD+ILDR+  +++  SH L Q+   LYGLIHARY++T  GL+AMY KY  +EFG CP   C  QPV+P+GL+DE  ++TVK+FCPKCQ VY  P      SH   G        VDGA FGTTFPHLF MT+  LVPDP   +  +VPRVFGFRV+
Sbjct:   78 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRACVSNFSDCLDLILDRIGPDDSDDSH-LTQSACTLYGLIHARYIITAHGLDAMYNKYAAKEFGTCPLIQCNGQPVLPVGLKDEMGVDTVKIFCPKCQCVYHPPPIRSRSSHHGPGGSAGGSGSVDGAAFGTTFPHLFLMTFNNLVPDPLDQQSAYVPRVFGFRVH 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBC4_9PHAE2.920e-11677.83Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
D8LK36_ECTSI3.760e-8577.11Casein kinase II subunit beta n=1 Tax=Ectocarpus s... [more]
A0A835ZJS8_9STRA2.640e-7358.62Casein kinase II subunit beta n=1 Tax=Tribonema mi... [more]
A0A6V1P2G8_HETAK3.280e-6551.21Casein kinase II subunit beta n=1 Tax=Heterosigma ... [more]
A0A448YXJ5_9STRA9.670e-6555.30Casein kinase II subunit beta n=1 Tax=Pseudo-nitzs... [more]
A0A1E7FEH7_9STRA5.060e-6454.63Casein kinase II subunit beta n=1 Tax=Fragilariops... [more]
A0A7S1ZP41_TRICV6.190e-6455.56Casein kinase II subunit beta n=1 Tax=Trieres chin... [more]
A0A7S3PD94_9STRA7.950e-6455.94Casein kinase II subunit beta n=1 Tax=Amphora coff... [more]
A0A7S0Y7J2_9STRA2.120e-6355.72Casein kinase II subunit beta (Fragment) n=1 Tax=P... [more]
A0A7R9W3V5_9STRA3.060e-6355.07Casein kinase II subunit beta (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig871contigP-littoralis_Contig871:61062..66045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK36
PFAMsCK_II_beta
Model size2563
Max annot lvl2759|Eukaryota
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.3e-88
EggNOG OGsCOG5041@1|root,KOG3092@2759|Eukaryota
Descriptionprotein kinase regulator activity
Cds size1617
COG categoryDKT
BRITEko00000,ko00001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig871.18.1prot_P-littoralis_Contig871.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig871 61954..65991 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.9883857-UTR-P-littoralis_Contig871:61061..619531680791751.9883857-UTR-P-littoralis_Contig871:61061..61953Pylaiella littoralis U1_48UTRP-littoralis_Contig871 61062..61953 -
1680791752.0760598-UTR-P-littoralis_Contig871:65991..660451680791752.0760598-UTR-P-littoralis_Contig871:65991..66045Pylaiella littoralis U1_48UTRP-littoralis_Contig871 65992..66045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791752.0004387-CDS-P-littoralis_Contig871:61953..625931680791752.0004387-CDS-P-littoralis_Contig871:61953..62593Pylaiella littoralis U1_48CDSP-littoralis_Contig871 61954..62593 -
1680791752.010684-CDS-P-littoralis_Contig871:63000..635261680791752.010684-CDS-P-littoralis_Contig871:63000..63526Pylaiella littoralis U1_48CDSP-littoralis_Contig871 63001..63526 -
1680791752.026804-CDS-P-littoralis_Contig871:64065..642101680791752.026804-CDS-P-littoralis_Contig871:64065..64210Pylaiella littoralis U1_48CDSP-littoralis_Contig871 64066..64210 -
1680791752.0386672-CDS-P-littoralis_Contig871:64492..646141680791752.0386672-CDS-P-littoralis_Contig871:64492..64614Pylaiella littoralis U1_48CDSP-littoralis_Contig871 64493..64614 -
1680791752.0500848-CDS-P-littoralis_Contig871:65807..659911680791752.0500848-CDS-P-littoralis_Contig871:65807..65991Pylaiella littoralis U1_48CDSP-littoralis_Contig871 65808..65991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig871.18.1

>prot_P-littoralis_Contig871.18.1 ID=prot_P-littoralis_Contig871.18.1|Name=mRNA_P-littoralis_Contig871.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=539bp
MSDTSSSDGEDNWIHRFCGLEGNEMFCEIDKSYIEDSFNLFGLRHWVPNI
NDSLDVILDRVSENEASHELLQATGALYGLIHARYVLTTAGLEAMYAKYT
LQEFGNCPHFLCRRQPVVPLGLQDEPHIETVKLFCPKCQDVYVHPSHAAQ
GVDGAYFGTTFPHLFFMTYKGLVPDPPEKTFVPRVFGFRVYARDPSGGDT
AASGQGEHNEQRLQERRRLRRPHPPQSPSQQTSRAVAHGAAVAVAGRTGS
SPPNGEREAGAGGEGEGRAKAGGKGGSVVVRIKEEEELNETGTRTGKGAE
VRVEGGSVGARAVAVGHVVENGNQANPTLASQSSGAGMDKTGGHDSPAGE
SGGGGDRKPDMTRSGKRRATDASGATANGVTASSHRGNGHNAAAGCSDAG
DGGTNYSSRDRDAAGAGTMATVPGVDGKAKYESSEDNGGGTDGPRREAEQ
PAGSGDPRERGTKRFSEVELEAAAVDAVGGDAGARGVVLRARGKAPRGRN
LTAPAASEAAAGPAGSAVVEGRGGDGSDRRKTRGRSPM*
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mRNA from alignment at P-littoralis_Contig871:61062..66045-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig871.18.1 ID=mRNA_P-littoralis_Contig871.18.1|Name=mRNA_P-littoralis_Contig871.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4984bp|location=Sequence derived from alignment at P-littoralis_Contig871:61062..66045- (Pylaiella littoralis U1_48)
ATTGAATTGCCGGAAATAAACCCTGCCGTTGTTGGCGTTTGGCAACGTGG
TGCGATGTCAGACACTTCTTCATCAGATGGAGAGGATAATTGGATCCACA
GGTTCTGTGGACTGGAGGGAAACGAGATGTTCTGCGAAATAGATAAGAGC
TACATCGAGGATAGCTTTAACCTCTTCGGTCTTCGGCACTGGGTACCCAA
CATAAACGACAGCTTGGACGTGATCCTCGACCGAGTATGTGAGTGGCGTT
CCCATCGGTCGTTGTTTACCATGCACAGGGTCTGTCGATTCTGCCGGCGT
GCGTTCATGCCTATATCTGTACCGCGGTACAGCAGTACAGCAGTACCAAT
CACTGCTGTCGTTGTCGTCGACTCTCCCCGTTCTTCGTTTCTTTGAAAAA
GAGCCTCAGCTCATATGATATGATGCAACCTATTGTTGTTCGTTTGAGAT
CGCCGTCGTCCTGCTGAGATCGTTTTGGTTTTTCGTTTTGCCTGGCGCAA
CAGTCACGGCAACCGATGTCCATCGCCGTCACACGTCGCGAGCACGATTG
AGCAGTTGCGACCCAAGTGGAAAAGGGTATATTGATCGTGCCGTGATCGA
CGGAATATTTTACACGCATTGGGATAGCCATATACGTCGCCGCAATCCAC
AACAAGCCTTCCCTCTCAACAGCACAGAGTATTTTGCGTTGTCCCTTGAT
TGTGCTTCTGAGGGCGTCTTCTATCATATGGTAGTCGTCTCATACCTTCA
TTGTTGGCACTGAGATCAAGAGCCGTTCATAAGCAGTCGACAACTGCCAT
CCCAAAGATACCCAAGACACCCATGGAAGACATGTATGTCATCTGTGTCA
TCGCCACAATGGTGGACACGTTCGAGGAGTGTATTTTTTCCCAACTCGAC
TGCAAGGAATACATATCACGTTACATACCACCCCCCGCCCCTGAACCGAT
TTTTAAATCTGAACTTGTATCAATCTGATATCTACGGTCGTACTCCACAG
CAGAAAAAACGTTGGTGCCGAAAGGGACGGCGGCGTCGGAACCATGTCGT
CAGGAGAGCGGACAACGTGATTTATATCGTTTCATGTTTACCAGCACCCT
CGTTTTGTTTTGTTTTCGAGCTTTGAAAATCAGTCGAGGGGGTCCCGTGG
TGTCTCACTTGACCAGCATGTGCGGCAGGGCAGCATGGACACTCAGATCA
CGCACGGCGGTGCATCCCTTGTCGTGCTCATGTCATGTTCATTAGCAATA
AAAAAACTAGGCCTGCATACGGTGTCTGGCTCCGCTCTCTCCTCCCTTTC
TCCCCTACTCTAACCAATAATTTGTTTCCCCCGACCCTTTGCCCTAATGG
TTCTTTTCGTGTATCTCTACGCTACGGATCGACACAAACATGACACGCGG
ATCAACTAAAACGACGACGACGACGCGAAAGCCGAGAATGAGGCGAGCCA
TGAGCTGTTACAGGCTACTGGTGCGCTGTACGGCCTGATCCACGCCCGTT
ACGTGCTCACCACGGCCGGCCTAGAGGCCATGTATGCCAAATATACTCTT
CAGGTAAGAAATGACAGACCCAGCAGTCAAGTCGCTACACCTCACTGACG
TGCCGGTATTTCACGACACGATGTGTTCCAACCAGGCCAAAGCCAAGGGG
TGACGCTTTACTGCTGTCAGTGCTGGCATTATTAGTATGCTCGCTCTTTC
TCTGGGCTGTCGCCTGGCGCATATTCTTCTGTTGTGCTCTCACCGCCTCT
GTCTTGTTCACCGGTCGTGATGAAGACGGCGAAATGAGCACCAGCAAATC
ATTTTTCCCGATTTTTCCGGTACAAACATCTACAGGAGTTTGGCAACTGT
CCGCATTTCTTGTGCAGAAGGCAGCCGGTGGTGCCTCTTGGGTTGCAAGA
CGAGCCACACATAGAGACGGTCAAGCTCTTCTGCCCGAAGTGCCAGGATG
TTTACGTGCATCCGTCGCACGCGGCTCAGGGTGAGTAAAGCTGGTGTCGT
CAGTCATTCGATTGGCTGTCGCACGCTCTGTCCGCAGCCGGCGGTTGATC
GTTTGACAGATCCGCGTCACCCCCAGCACTTTTCTTCTCTCTGCGTGCAG
GAACATGTTTGTTGGCGTTGCTGTCCTCAGGCCATGACCTGTTCCAGGTT
TTGTGTTTAACGGATAGGTGCACACGATGGAGATCCTGGTATGCCACGTC
ACTGAAGTAGCGGTGTTTGTGGTCATGGTGCTCGCGCTAAAATAATCGTT
TTGCTCAGAGCAGACGGCGCCCCTTCATAAATTCCGTGCTCCTTTCTGTC
GTTGGCCCAAGCTTTAGACTGACCGTACTTGTGCATCGAGTGCAAAGACC
ATCATCTCTTTACACACCAACTGTAACGACATAGTCTTGTGCCCCAAAGT
AACTGGAAGCGAGGCCCGCGCTATTGTACCGCGGTCTTCGTCCCTGGTCC
CTGACGCCCCCTCCCCCGTCGGACAACCACGGCCGCGGTGTTGGCCATTT
CCGATACTTGTTTTTACAGGGGTGGACGGGGCGTACTTCGGAACGACTTT
CCCCCACCTCTTCTTCATGACCTACAAGGGCTTGGTTCCGGACCCTCCGG
AAAAGACGTTCGTTCCTCGAGTTTTCGGATTCCGCGTGTACGCCCGGGAC
CCGTCCGGGGGCGACACGGCCGCCAGTGGCCAGGGCGAGCATAACGAGCA
GCGCTTGCAGGAGCGCAGACGGTTACGCCGACCACACCCACCACAGTCGC
CGTCGCAACAGACTTCCAGAGCAGTAGCACATGGAGCAGCGGTGGCGGTA
GCGGGACGCACAGGGTCTTCTCCCCCTAACGGGGAAAGGGAAGCGGGCGC
GGGTGGCGAGGGGGAAGGGCGGGCGAAGGCCGGTGGAAAGGGCGGATCGG
TCGTGGTGCGCATAAAGGAAGAGGAGGAACTCAATGAGACTGGGACTCGG
ACGGGGAAAGGGGCAGAGGTTCGAGTGGAGGGAGGGAGCGTGGGCGCAAG
AGCGGTGGCAGTGGGTCACGTCGTGGAGAACGGGAATCAAGCAAAGTGAG
GGAGTAGATGACTCCCAACGCGGCCTTTCGTTCACTTATTGTCGATGCTA
GCCGTCTCACCAAATTACAAAACGACACAGCGGTCTCTCAGCGGGTCACA
ACGTATGTTGCTCCTTGTATTAGCATTCCCCGGTGCGTTTGTTTACTAGC
GCCATGTCCCAGCGACATCTTTTTTTATTAATCGTGTTTCTCGCGTTACA
GTACTCTCTTTTATCCCGTATTGGGAGAATGTGCCATGGGCACTTTCAGA
CCGCTTCAGATCACTTGATCGGTCATTTATTTTGTACTCCGGCTTGTGCA
TTTTTGAGCAAATACTTCGAAGCAAGAACTTGTGAAGTACTCGTACTTGT
TCACTTATTACACGCCGTCGGCGCTTCGTTTTCCGCTATGTACTCGTTCC
AGCCCTACCTTAGCGTCGCAAAGCTCAGGGGCAGGCATGGACAAAACGGG
AGGGCATGACTCACCCGCAGGGGAAAGCGGCGGCGGCGGAGACAGAAAGC
CAGACATGACAAGGAGTGGAAAGAGAAGAGCCACCGACGCCTCGGGTGCC
ACCGCTAATGGCGTCACCGCTTCTTCTCACCGGGGTAATGGACACAATGC
CGCCGCCGGTTGCAGCGATGCCGGGGATGGCGGCACCAATTATTCTAGTC
GCGATAGAGACGCCGCTGGGGCCGGAACGATGGCGACAGTACCAGGAGTT
GATGGAAAGGCGAAATATGAGTCCAGTGAAGACAATGGTGGAGGCACCGA
CGGGCCCCGAAGAGAAGCAGAACAACCGGCGGGATCGGGCGATCCTCGAG
AGCGTGGAACGAAGCGATTTTCGGAGGTGGAGCTCGAAGCTGCCGCAGTA
GACGCGGTCGGTGGTGACGCAGGGGCTAGAGGGGTGGTCTTAAGGGCAAG
AGGAAAAGCCCCACGCGGTCGAAATCTTACAGCGCCGGCGGCTTCGGAAG
CTGCTGCTGGCCCTGCCGGTTCAGCTGTTGTGGAGGGCAGGGGTGGTGAC
GGCTCGGATCGCAGGAAAACCCGAGGCCGTTCGCCGATGTAGCAGCACTT
GGGAGCACCGTCTGTTATTACCTTGTTGGGTGCAACCTGATTAGAGCCTA
GAAGTCGAGGTGGGGGAGGGGGTGGCACGCACCAGAGGCGCAGTGGGGTC
TGCCATGTCCGTACATTTGGCGATCGTGCGATGACGGCTATTGTTATTCA
TTTACTGCGGTTGACAACGGGGAAATATCGGCACGTAACTGACATTTGTC
CGTTGGTTGATTGATGCATGTAAAGAATCGACGATCCTGTGTGGCGAGGG
TTGTCCTGCTCCTTCTGTGCTTGTGCATCGAGGCATACCCACGACGTCAT
CACACGATGACATTCCCTTGTGTACTGTACATACCATATCATAAGGCGCA
CTTCGTACATAGTTTGGGACGAAAATTGGCGTGCGCCCGAAGAAGCGTGA
ACCGCTGCCTTTGCTTGCTTTTGGTGACGTTTCCATTCACCATTTGCACG
ATTCGGCTCTTCAGATGTACCTGCACCGAGGAGCGCTAGCTCACGTTTTT
TGTCGACAAAAATTCGTAGGGGTTCGGCCGATTGCGCCAAGTACATCCAT
TTGCAGCTCTCGATAATGTTACCTCGTGTGAGTGCTTTACGGGGGCAGCG
ATTGGTTTATTTTGTACCAGGTACGAAGTACTTCGGAGTATATGTGTGCG
TGTCATGTAACAATTAAAAATTTTCAGGATTGGTGAGGTTTCCACTTTGA
CCTGCTCATATCGCGGGTGAGCTCGAATCGATGCATTCGTCAACGTCGGG
GCTGACTGTCGGAATGATCTGGACAACACACAACACGTCGTAGTCGTGTC
TCGAGGGTCTCCTCGACTGCCTATCCGTCCTTCTGTGTTGATCAAAATGG
CCAAGAAATACTAGCATATCGGCACACATTCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig871:61062..66045-

>mRNA_P-littoralis_Contig871.18.1 ID=mRNA_P-littoralis_Contig871.18.1|Name=mRNA_P-littoralis_Contig871.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1617bp|location=Sequence derived from alignment at P-littoralis_Contig871:61062..66045- (Pylaiella littoralis U1_48)
ATGTCAGACACTTCTTCATCAGATGGAGAGGATAATTGGATCCACAGGTT
CTGTGGACTGGAGGGAAACGAGATGTTCTGCGAAATAGATAAGAGCTACA
TCGAGGATAGCTTTAACCTCTTCGGTCTTCGGCACTGGGTACCCAACATA
AACGACAGCTTGGACGTGATCCTCGACCGAGTATCCGAGAATGAGGCGAG
CCATGAGCTGTTACAGGCTACTGGTGCGCTGTACGGCCTGATCCACGCCC
GTTACGTGCTCACCACGGCCGGCCTAGAGGCCATGTATGCCAAATATACT
CTTCAGGAGTTTGGCAACTGTCCGCATTTCTTGTGCAGAAGGCAGCCGGT
GGTGCCTCTTGGGTTGCAAGACGAGCCACACATAGAGACGGTCAAGCTCT
TCTGCCCGAAGTGCCAGGATGTTTACGTGCATCCGTCGCACGCGGCTCAG
GGGGTGGACGGGGCGTACTTCGGAACGACTTTCCCCCACCTCTTCTTCAT
GACCTACAAGGGCTTGGTTCCGGACCCTCCGGAAAAGACGTTCGTTCCTC
GAGTTTTCGGATTCCGCGTGTACGCCCGGGACCCGTCCGGGGGCGACACG
GCCGCCAGTGGCCAGGGCGAGCATAACGAGCAGCGCTTGCAGGAGCGCAG
ACGGTTACGCCGACCACACCCACCACAGTCGCCGTCGCAACAGACTTCCA
GAGCAGTAGCACATGGAGCAGCGGTGGCGGTAGCGGGACGCACAGGGTCT
TCTCCCCCTAACGGGGAAAGGGAAGCGGGCGCGGGTGGCGAGGGGGAAGG
GCGGGCGAAGGCCGGTGGAAAGGGCGGATCGGTCGTGGTGCGCATAAAGG
AAGAGGAGGAACTCAATGAGACTGGGACTCGGACGGGGAAAGGGGCAGAG
GTTCGAGTGGAGGGAGGGAGCGTGGGCGCAAGAGCGGTGGCAGTGGGTCA
CGTCGTGGAGAACGGGAATCAAGCAAACCCTACCTTAGCGTCGCAAAGCT
CAGGGGCAGGCATGGACAAAACGGGAGGGCATGACTCACCCGCAGGGGAA
AGCGGCGGCGGCGGAGACAGAAAGCCAGACATGACAAGGAGTGGAAAGAG
AAGAGCCACCGACGCCTCGGGTGCCACCGCTAATGGCGTCACCGCTTCTT
CTCACCGGGGTAATGGACACAATGCCGCCGCCGGTTGCAGCGATGCCGGG
GATGGCGGCACCAATTATTCTAGTCGCGATAGAGACGCCGCTGGGGCCGG
AACGATGGCGACAGTACCAGGAGTTGATGGAAAGGCGAAATATGAGTCCA
GTGAAGACAATGGTGGAGGCACCGACGGGCCCCGAAGAGAAGCAGAACAA
CCGGCGGGATCGGGCGATCCTCGAGAGCGTGGAACGAAGCGATTTTCGGA
GGTGGAGCTCGAAGCTGCCGCAGTAGACGCGGTCGGTGGTGACGCAGGGG
CTAGAGGGGTGGTCTTAAGGGCAAGAGGAAAAGCCCCACGCGGTCGAAAT
CTTACAGCGCCGGCGGCTTCGGAAGCTGCTGCTGGCCCTGCCGGTTCAGC
TGTTGTGGAGGGCAGGGGTGGTGACGGCTCGGATCGCAGGAAAACCCGAG
GCCGTTCGCCGATGTAG
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