mRNA_P-littoralis_Contig871.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig871.17.1
Unique NamemRNA_P-littoralis_Contig871.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.390e-26
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLR---RT---------GMPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            +E+ELR+Y+AED   EE  FSLLEFW+ R   RT         G+P LALIARL++G+ESTSCQAERNFSALAFLIG LRSS+ P KVERLM
Sbjct:  367 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLM 458
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.830e-26
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLR---RT---------GMPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            +E+ELR+Y+AED   EE  FSLLEFW+ R   RT         G+P LALIARL++G+ESTSCQAERNFSALAFLIG LRSS+ P KVERLM
Sbjct:  695 VERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLM 786
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.220e-17
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE+ Q +   F++L +W  R T               MP LA IARLY G+E+TSCQAERNFSALA LIG LR ++ P KVER+M
Sbjct:  509 IEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMM 602
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.250e-17
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE+ Q +   F++L +W  R T               MP LA IARLY G+E+TSCQAERNFSALA LIG LR ++ P KVER+M
Sbjct:  704 IEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMM 797
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.480e-17
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q E   F++L FW  R T               MP LA IARL+ G+E++SCQAERNFSAL+ LIGHLR ++   KVER+M
Sbjct:  127 IEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMM 220
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.580e-17
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q +   F+L+ FW  R T               MP LA IARL+ G+E+TSCQAERNFSALA LIG+LR ++ P +VER+M
Sbjct:  401 IEREMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMM 494
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.710e-16
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q E   F++L FW  R T               MP LA IARL+ G+E++SCQAERNFSAL+ LIGHLR ++   KVER+M
Sbjct:  692 IEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMM 785
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.190e-16
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q +   F+LL FW  R T               MP LA IARL+ G+E+TSCQAERNFSALA LIG  R ++   +VER+M
Sbjct:  122 IEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMM 215
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.710e-15
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q +   F+L+ FW  R T               MP LA IARL+ G+E+TSCQAERNFSALA LIG LR ++   KVER+M
Sbjct:  387 IEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMM 480
[Close]
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.290e-15
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 IEKELRLYMAEDVQSEETKFSLLEFWKLRRTG--------------MPSLALIARLYNGVESTSCQAERNFSALAFLIGHLRSSIAPDKVERLM 240
            IE+E+ +Y+AE  Q +   F+LL FW  R T               MP LA IARL+ G+E+TSCQAERNFSALA LIG L  ++   +VER+M
Sbjct:  505 IEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMM 598
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE4.390e-2665.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE6.830e-2665.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.220e-1750.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.250e-1750.00Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE6.480e-1748.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE7.580e-1748.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.710e-1648.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE3.190e-1647.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.710e-1548.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE8.290e-1547.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig871contigP-littoralis_Contig871:59628..59867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7029.ACYPI46947-PA
PFAMsDimer_Tnp_hAT
Model size240
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.07e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3ADXW@33154|Opisthokonta,3BW30@33208|Metazoa,3DCY7@33213|Bilateria,421KS@6656|Arthropoda,3SSEM@50557|Insecta
Descriptionprotein dimerization activity
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.939279-CDS-P-littoralis_Contig871:59627..598431680791751.939279-CDS-P-littoralis_Contig871:59627..59843Pylaiella littoralis U1_48CDSP-littoralis_Contig871 59628..59843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.95539-UTR-P-littoralis_Contig871:59843..598671680791751.95539-UTR-P-littoralis_Contig871:59843..59867Pylaiella littoralis U1_48UTRP-littoralis_Contig871 59844..59867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig871.17.1prot_P-littoralis_Contig871.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig871 59628..59843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig871.17.1

>prot_P-littoralis_Contig871.17.1 ID=prot_P-littoralis_Contig871.17.1|Name=mRNA_P-littoralis_Contig871.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MAEDVQSEETKFSLLEFWKLRRTGMPSLALIARLYNGVESTSCQAERNFS
ALAFLIGHLRSSIAPDKVERLM
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mRNA from alignment at P-littoralis_Contig871:59628..59867-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig871.17.1 ID=mRNA_P-littoralis_Contig871.17.1|Name=mRNA_P-littoralis_Contig871.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig871:59628..59867- (Pylaiella littoralis U1_48)
ATTGAAAAGGAGCTGCGGCTGTACATGGCGGAAGACGTGCAGTCCGAGGA
GACCAAGTTTTCCCTTCTAGAGTTTTGGAAGCTTAGGAGGACAGGTATGC
CGTCTTTGGCGCTCATCGCCCGACTTTACAACGGGGTTGAGTCTACCAGT
TGCCAGGCGGAGAGGAACTTCTCAGCCCTTGCCTTCCTCATCGGCCACCT
GCGCAGCTCGATCGCACCCGACAAGGTCGAGCGACTGATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig871:59628..59867-

>mRNA_P-littoralis_Contig871.17.1 ID=mRNA_P-littoralis_Contig871.17.1|Name=mRNA_P-littoralis_Contig871.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig871:59628..59867- (Pylaiella littoralis U1_48)
ATGGCGGAAGACGTGCAGTCCGAGGAGACCAAGTTTTCCCTTCTAGAGTT
TTGGAAGCTTAGGAGGACAGGTATGCCGTCTTTGGCGCTCATCGCCCGAC
TTTACAACGGGGTTGAGTCTACCAGTTGCCAGGCGGAGAGGAACTTCTCA
GCCCTTGCCTTCCTCATCGGCCACCTGCGCAGCTCGATCGCACCCGACAA
GGTCGAGCGACTGATG
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