mRNA_P-littoralis_Contig871.15.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig871.15.4 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI) HSP 1 Score: 1018 bits (2631), Expect = 0.000e+0 Identity = 654/970 (67.42%), Postives = 708/970 (72.99%), Query Frame = 1
Query: 151 MSVDLLAASRRPWKRLLHDCPFPEWENIALFVDGGSAEALRWAGGLGFVLEELGISQVLDLQAFVPEKKGGAGRAPECDGLTRGIFLVTTFVWDVEGAVLNAARTYGLTEVAVACSVSEEAHACHPHAAHISEETGGHVSFPVVSQQLKVSLERMLKIQAQSSSTSRRRFVAPPSSSSSPFPXXXXXXXXXXDSLYASSTSTLQPRTEHDRDYFPSVSVTIVHSPIHLGCFFQPAT------GRSSTISSSSSNPALGKTGCSSFSLASPACARVFPLRRCDWEGGGXXXXXXXXFAAATAVEGGVXXXXXXXXHASAEEVPRAERLQYRLLAHTLVEALWDQLLLDVSGSGGVFTLGDTSRLIGSTVAAAAEDIKRVGIERQSPLGFGG-------------GTDSXXXXXXXXXXXXVVLIDRTLDLAAAASHGGSLLQRILSSIPRTGTEASALPPSSSSSASEAFATDWSPVSAAHQQDVGVVLPMLAPGLGFPIGCGGXXXXXXXXXXDGTRAEGT---KPPRLLAMNALASFSWPAPPSLCHSGTNT-AAAGVVHTMGCLGEPEGQAALISALEKCVSDNGCTLPPPKRRGMGSSIMALVTSLARGNPRPGGLSGDRVCFRCRGVVQVALAAMEAHQRTSALAGSGWQETVAAERAQLQQLRDGSTVDVVMEQLYASLNEAPPSARPSSLGSD--------TGAARAGSSTRDALLLALRGVSLAGEGIRTEDAGSFRKAWVSRMLAGGIREAGSGVPSGVAEAVDRISSR-RESTRGVEAAGGRFAEESAEGTGVRLELEDIARERTQRLREAAASRPFHLKNTPVLRDLAFEPYTFVASAPAPAEGSGGXXXXXXXXXXXXXXXXXXGDDETAD-VKEQTSGDVDGEGAS-VEHTMECDTLVARLAGLMLDRNNPDVADLHEAKLVSAASVGLGLLSSGLKKLGRIGGATGGVRGGRHKKSR 2958
M+VDLLAASRRP +RLLH+C F +WENIALF+D G+ EA+RWAGGLGFVLEELGIS +LDLQAF P + A PE +GLTRGIFLVT FVWDVEGAVL+AA TYGLTEVA+ACSVSEEAHACH HAAHISEETGG SF VVSQQLKVSLERMLKI+AQSSS+ RRRF S P P XXXXXXX A+ + D P+V VTI HSP+H+GCFFQ +T G S + + + GCS+FSLASPACARVFPLRRCDWEG XXXXXXXX XXXX H SAEEVPR ERL+YRLLAHTLVEALWDQLLLDVSG GGVFTLGDTSRLIG+TVAA AED+KRV +ER +P GFGG G S VVLIDR LD+AAAASHGGSLLQRILSSI RTGT SA+P + SS EA A DWSP +AAHQQDVGVVLPML PGLG P XXXXX KPPRLLAM AL+ F W APPSLCHSG + AAAGVVH M C GE EGQAALISALEKCVSDNGC PP KRRGMGSSIMALVTSLARGNPR GGLSGDRVCF+ RGV+QVALAAMEAHQRTS+LAGSGW ETVAAER QL+QLRDGSTVDVVMEQL A+LN APP SS S GAAR GSS R+ALLLALRGVSLAGE I +DA SFRKAW+SRMLAGG RE GSGVP+GVAEAVD+I SR RE T E A E GV LELEDIARERTQRLRE A+SR FHLK+T VLRDL FEPYTFVASA A XXXXXXXXXXXXXXX DD D E T G + +G S EHT ECDTLV RLAGL+LDR PDV DL+EAK+VS ASVGLGLLSSGLKKLGR+GGA GGV GRHK+SR
Sbjct: 1 MAVDLLAASRRPLERLLHECSFSQWENIALFLDEGATEAVRWAGGLGFVLEELGISHILDLQAFAPGRSPPA--VPESEGLTRGIFLVTNFVWDVEGAVLHAACTYGLTEVALACSVSEEAHACHSHAAHISEETGGRASFAVVSQQLKVSLERMLKIKAQSSSSGRRRF-------SKPSPSSTXXXXXXXTQTIATEAAPHLAANAVD----PTVLVTIKHSPLHVGCFFQASTTITSGGGSSVDVDQPLDSQGQHQKGCSAFSLASPACARVFPLRRCDWEGXXXXXXXXXXXXXXXXXXXXXXXXXETRGHVSAEEVPRGERLRYRLLAHTLVEALWDQLLLDVSGGGGVFTLGDTSRLIGTTVAAVAEDLKRVSLERPAPPGFGGEGGADSASSGRGGGFGSDGAGPAARREASVVLIDRNLDVAAAASHGGSLLQRILSSIDRTGTPNSAVPATPSSP--EAVAIDWSPSAAAHQQDVGVVLPMLTPGLGLPARAAAVERSGXXXXXXXXXXXXXXXGKPPRLLAMKALSGFPWRAPPSLCHSGGDAGAAAGVVHAMACHGEEEGQAALISALEKCVSDNGCVPPPRKRRGMGSSIMALVTSLARGNPRAGGLSGDRVCFKSRGVLQVALAAMEAHQRTSSLAGSGWSETVAAERVQLRQLRDGSTVDVVMEQLCATLNRAPPMDFSSSSSSPPGGTASLGAGAARTGSSAREALLLALRGVSLAGESIGAQDATSFRKAWISRMLAGGFREGGSGVPAGVAEAVDQIRSRKRERTTAPEPAAESVGTGEVEEAGVLLELEDIARERTQRLREVASSRSFHLKSTAVLRDLGFEPYTFVASATAXXXXXXXXXXXXXXXXXXXXXXEEGWDDWGEDEAGEGTPGVANDDGGSRTEHTAECDTLVGRLAGLLLDRTRPDVPDLYEAKVVSPASVGLGLLSSGLKKLGRMGGAGGGVHRGRHKQSR 955
BLAST of mRNA_P-littoralis_Contig871.15.4 vs. uniprot
Match: A0A7S2RG32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG32_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.450e-5 Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 1
Query: 145 SAMSVDLLAASRRPWKRLLHDCPFPEWENIALFVDGGSAEALRWAGGLGFVLEELGISQVLDLQAFVPEKKGGAGRAP-ECDGLTRG---IFLVTTFVWDVEGAVLNAARTYGLTEVAVACSVSEEAHACHP 528
++ +D L +R+P++ L + LF+D +AEAL+WAGGL F LEELG VL L + P + G G P E L RG + ++ + +W+ + ++ G +E + + + HA P
Sbjct: 6 ASADLDPLEWNRQPFRTRLFARAV---KGALLFLDDVAAEALKWAGGLPFALEELGAQAVLRLGDYGPPGETGEGGLPGEVSVLPRGDRVVVVLASALWEAQHELIAVLTGTGASEALLCPAQDGDRHAVEP 134 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.15.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig871.15.4 >prot_P-littoralis_Contig871.15.4 ID=prot_P-littoralis_Contig871.15.4|Name=mRNA_P-littoralis_Contig871.15.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1062bp ERGRGLPSPGSDPGLETWATFPAEPTPFAPRHVVTLEVHGQPVIFRKYSAback to top mRNA from alignment at P-littoralis_Contig871:45549..58101+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig871.15.4 ID=mRNA_P-littoralis_Contig871.15.4|Name=mRNA_P-littoralis_Contig871.15.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=12553bp|location=Sequence derived from alignment at P-littoralis_Contig871:45549..58101+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig871:45549..58101+ >mRNA_P-littoralis_Contig871.15.4 ID=mRNA_P-littoralis_Contig871.15.4|Name=mRNA_P-littoralis_Contig871.15.4|organism=Pylaiella littoralis U1_48|type=CDS|length=3186bp|location=Sequence derived from alignment at P-littoralis_Contig871:45549..58101+ (Pylaiella littoralis U1_48)back to top |