mRNA_P-littoralis_Contig871.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig871.4.1
Unique NamemRNA_P-littoralis_Contig871.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig871contigP-littoralis_Contig871:10953..16810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002504845.1
PFAMsSHIPPO-rpt
Model size486
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.86e-05
EggNOG OGs2CSE9@1|root,2S49A@2759|Eukaryota,37WHY@33090|Viridiplantae,34P89@3041|Chlorophyta
DescriptionSperm-tail PG-rich repeat
Cds size462
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.0603983-CDS-P-littoralis_Contig871:10952..110301680791751.0603983-CDS-P-littoralis_Contig871:10952..11030Pylaiella littoralis U1_48CDSP-littoralis_Contig871 10953..11030 +
1680791751.0775585-CDS-P-littoralis_Contig871:15407..155781680791751.0775585-CDS-P-littoralis_Contig871:15407..15578Pylaiella littoralis U1_48CDSP-littoralis_Contig871 15408..15578 +
1680791751.092702-CDS-P-littoralis_Contig871:16064..161931680791751.092702-CDS-P-littoralis_Contig871:16064..16193Pylaiella littoralis U1_48CDSP-littoralis_Contig871 16065..16193 +
1680791751.1080198-CDS-P-littoralis_Contig871:16703..167871680791751.1080198-CDS-P-littoralis_Contig871:16703..16787Pylaiella littoralis U1_48CDSP-littoralis_Contig871 16704..16787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.1240551-UTR-P-littoralis_Contig871:16787..168101680791751.1240551-UTR-P-littoralis_Contig871:16787..16810Pylaiella littoralis U1_48UTRP-littoralis_Contig871 16788..16810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig871.4.1prot_P-littoralis_Contig871.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig871 10953..16787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig871.4.1

>prot_P-littoralis_Contig871.4.1 ID=prot_P-littoralis_Contig871.4.1|Name=mRNA_P-littoralis_Contig871.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
CANRSTRDRDPRSKGSTSSPSLSESRISWPSSSLPRPVTTFGTGSREKAG
QVLSPGFKGYTQNTVGNPGPGAYYNVPGSLGIQVDSTLFSSTANSFSQGG
RGVRSARDAGVPGPGSYRATSSLGHQISSTCPTAPQPKFGTSVRCALEDG
LVG*
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mRNA from alignment at P-littoralis_Contig871:10953..16810+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig871.4.1 ID=mRNA_P-littoralis_Contig871.4.1|Name=mRNA_P-littoralis_Contig871.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5858bp|location=Sequence derived from alignment at P-littoralis_Contig871:10953..16810+ (Pylaiella littoralis U1_48)
TGTGCGAATAGATCAACAAGAGACAGAGATCCAAGAAGCAAAGGGTCCAC
CTCGTCCCCATCATTGAGTGAAAGTCGGGTAAGCGTTGTATTGCTTTTAA
TACCGTGCTGATATGCAAGTACTCACTTACGACCGACTCAAATGTTAGAC
ACTGAATCCGAACTACTGAGTCTGAACTGTCTTTACTTACTGGCTCATCG
AGAGAGTACTGACGTTTAGGTTGTGAGCATTTGAGCGGACAAACGTTAGA
GTGTCTCGTTGTTGCCCGTATAACACTCGCGGCTACTTCCCGACCGGGGT
CGAGCTCGATTCATTGAGTCACTTGTGGACGCACCATGTCACAATATAGT
AGGAGGGGTGGTGTCGAAAGGCACCACTACGGGTCGCCCCGGTGGACTAG
TGGTCCCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTCGATTCCCG
GTGAATGTGTTCCTTTGCTCCTTTGAAAGCGGCTATGCTGTTGGTAAAAG
AAGATTCGGCTTCCCCGACGAGGGTAGGGACCGCGGATCCCTGCTCGCGA
GAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCC
TGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTAGT
TTGAACCGCAGGGTGCAGACTAGTGTGACAGAGAATATGGGATGACAACA
CACACACTCACCAATGTGCTGATGGTTCAGAGCGTTGGTGGGGTCATGCA
CGATGGTAGCTACGCGCATGATACATTGGGCTACGAGGCGGCTCCCGCGG
CAGCATCAGCAATGACGACGCCAACGCCAGCTGTGTCGAAGCACCGTCGA
GCAAAGCGCGGGACCTGTAGCCTGAGAGAGGCAGAGAGGTTAGGAGATGC
CACGCGAGAAAGACCTGCGCTGGCACGCTGGAGATAGACACCGATGCTTC
TCGAGAGTGTTGCACTCGGCCTATTTGAACGAGGATAGGGATCGAGGTTG
ACAGAGATGGGTAGAATAAAGGGAAACAGCGGCTCGAAAACAACGAAATA
TAAATTAGCCCCTACCGAAGGTAGACCGAAAGCGACGGGCGAACATCAGG
AGCAACGACATGTGAGAGGGCGAGCTGATTGCGCGTGAATTACTTCATCG
CCCGCACCTTCGCCTACAAGGGAAGCAGATCTCTACGTCGTTGCAAGATA
CACGACGTGACGGATAAGACGCGATCACCCATGGGGGATAGGGTGTTGTA
CGGTGCTGAAAGTATTGTACGAACGAGGCGCGAGCGGAGTACACGGGGCG
GGATTGGAGATCAAGTCGTCTGTTGTGGATTAGATGGAGAAGGGAGACAT
GGTGGTACTCATGAAGAAACGCAACGGCGTATTTTGAATGCTTGCGCATG
CACCTACGGGATGAACACGTGATGGTGCTGCTAAACACTCACAGCTTCTG
GAAAACGGTAGGCGCCGCGACCAGGGAGGTTTGTGTCGGGAAACACGTGA
TGGTCATGGAAAATGGGGGTGCTTGAGTGGGGAAGGGGAGATGGATGTAG
TGACGAAAGAGACTTTACAACGAGGAACGACTAGGATCTCTACCTACTTA
CATTTTTTCTTCCTCGACACCATTTCAGCACACCAAAACGCGGAATACGG
CACACGTGTGACGACGACAATCGCAAGAAGGGACAACGCCGCCTCGACTA
CACCGTTATTCGGTAAACACACAAGCGTCTCGAGAGCCGCAATCTCGTGC
TGTTCGCGGAACCGAGACAAAGGCTCAGACCGCAACCTCGCGCACGCTGC
CATCCGCCTCCTGGACCGAGTCGCGCCCGACGGGCAAAAGAGAAACACTA
GCGGTGGACGAACAGCCATTGATTTCCAACGGCTGATAGCGTACCCGAAA
CTTTGGAAAAATAATTTAGGAACAGATATCCCTCACTATGCCCAGATCGT
CCTTGGACGAAATGGTTGTGATGCCGAGCGATGCCGAGCGCCGCGGACAC
CGCACCCCCGACTCGGTGCAAGCGCAAAACGAGCGGATGGTGCATCAGTG
AGAATGTGAGGCATGAGATTCACATGGCATGGTAGGCGAGGGAGGAGGCT
CGGAAGCAACTGCGTGGTGCATCGACAAACCGCGCCTTGTGGAGGAACCT
GAAAATAGCAGGGAAAGGGCTCGACCAACGGTTAGCCGATGCCGCAGCGA
CGTTTTTCGAAAGGAGTGTCCGCAAGCTCGACCAGGGGAGCCACGGAGAG
GATCACGCTGGGGTTCTGCAAGCTGATGGAGAGACTGGATATGGGTGGGA
AGCGGTCCCCTACATCGGAGAACATCAAGGACGGGGACGGCAAGCTGTTG
TCGAACCCCATACCCATTCGCGCGCGGTGGGCTGGATGTTTCCGTACACT
TTTCAATACTGAATCGACATCTCTCGATCCAAAGGTGAACGACCATGTCA
AGGCATGCCCCGTATTCGGGCCACCACAGTAGTGCAAGGACACCACGAGC
TAGGTGCTGTGTATGAAGCAGGACAAGACGCAACGTGGCAAGTACGCAGG
TGTTTCCGTAGTTGCACATGCTGGCAGGCGTCTCTTCAAACTTTCGCCAA
GCGTGTGAATGGGTGCTGCGAACGGGAGGTGATCGTCCCGAAAGAGCTAA
GTGGCTTTCACCCACATGCCGTCGTTCGACCGTCGGCACGATATTCATGG
TGCGGCGAATCCCCGAACTGGCGCGAAACAAGTGCACCTGGCTCTTCGCG
TGCTTCATCGACGTCACGAGAGCATACAATTCCACAGGCAGAGACCTCCA
ATCCTTGCGATTGCCCGTCATTTCCACGATGGTGTGAGGGCGCACAATGG
AATATGCTCAGACGGGTTTGACGTGGGCCAGAGTCTCTGACAGGGGTATA
ACGCAGCACCGCTGCTGTACCACCCTTTTCTCCGCAATATTCATGTCGCA
GCAGACGAGCTAGGCGGACATGGTCAAGTTCAAAAGTAAAGGAAGGGAAG
CGAAGGTGGTGAAGGCTGTGAAGCCGGTCTGAAGTATGCTCTATGTCGAT
GACGTGAATGTAGTTTCGCCGTCACCGAAGGGCGTTGAGAATATAGAAAC
GACCAACGCGTGCGTGTCCGATTTGGCCCGATGTTGTCGGAACCGAAGAC
GGAGACTACGTGCATGCTTGCGAATGAGATGGAGCAGCGTTTGAATGAAT
GTCAACACCAGGTGTACAGGCGGTTGCGTTCCTCAGGGGAACCAAATTCC
AGGATAGGAATGTGGGCGCTGATATCGTGGGGTGAGTGCCTCGGGTATAC
CGGCGAAACAGCCAATCGATGTACGACGGTGGGAGGACCCGCCCCCGGCT
CAAATTACGCCTATTTCAAGCCGGAGTCGTTGAGACCGTCCTGAACGAGT
GTATGACGTGAAACCTGAAACCTGCACACCATACTTATTTCCGAGCAGCC
CATCAGAATAGTTTTATATCCTCCGCTGCATCAGCGGGCGCAAGAAGTCA
AGGACGGCCTCCAATGCGTCGTGCTCCGAGGCACTCTCCACGAGCGTTTG
CACCGAGAGCGTCGGGGCCGCCGTGCGCAAGCGGAGACTATCCTTCATGG
GATTTGTCACGCACAGGGAAACAACTGACTCTCGAAGTGCGTGGTGTGTT
GGGGGAATATAAGTATAGAGTGGGGCGCGAGGTATCCGGGGTGGTCAAGG
GGATGACTGGCCGAAGCTCCTCCGGGACCTCTCAGGGCGTTCGGTATCAA
CGCACGAAAGACGGGTGGGAAGCAAGTGGCAGGAGAACGGAGGAGTTGCA
CGGCAGGAATTATAAGGGAGGGACGTGGTCCATGGAAGAGTGGCACCGAA
GCGAGAAAGACGCAAAAGAGCAGCGCCGTTTGAAGAGGGAGGAGAAAGGG
GACGTAGGAACGGACGGCTGCTGCCACTAGTGATAAGCCTCAAAGAAAAA
TGAAGCGGAACAGAAATAAAAGTGGCAAACAAGCCGGGGGGGGAATCTTA
GCCGAAAAGCGGGGGGAAGAATATCTCCCGCATAATTGCGGGGAGTAGGC
AGAGCGTAGGATGAATTTGCGACTGACTGAGCTGTAACACACGCAGTCAT
CCTTTTCTTGCGTAATAGAGCACCCGCCCTCCTAATATGCTGTTCTTTCT
CGTGGGATTTCTTTGATATTCATATTTAATTTGTGTGCAGTATTTGTATC
CACGGGCTAGATTTTTTAGATGGGGCAACTTAAGAATCAGTAGCAACAAC
AACAGCTGGGGTGCTTTGATTTCTCAGGAGAGATGTCGGACCGTAGAGGA
AGTCAGAACTGCATCTGTTCCTCAAACAGTTCAATCGTGCTGAGAGTGAG
TTTTGCCCGCCGACGACTAAATTTGTGTTTTGCTCTGCTCAGTTATTTCC
GACAATGACGTGGCTACCGCGTCCTATACCGTATACTTTGTATATGAATA
CACAGATCTCGTGGCCATCGTCATCGTTGCCACGGCCTGTGACCACGTTT
GGTACGGGGAGTCGAGAGAAGGCCGGCCAGGTCCTGTCGCCAGGATTCAA
GGGGTACACGCAGAACACCGTTGGGAATCCGGGACCAGGGGCATACTATA
ATGTTCCCGGCTCACTGGGAATTCAGGTACTCGTGATCGAGGTTTGACGA
CATGTCGGCACCAAGATGCCGGAGTCGGGGTAAACGTCTATCCTCCAGCA
GATACCATCGAACCTCACGAAGAAATGCGGCTGAACGCCTGTGCGCATGT
GAAAACTCTGTGACTACGCCCAAAATATTCCTTGCCGGTGGCATGCACGA
AAAACGGCCAAAGTGAAAGATACAATGACTGGTCTGCTTTCTGGATGTCG
CTTTTTTGTGTTCCGAAAAACGAGACGAATGAGCGATGGGTGCATTAAGT
CTCGTCGACGGCGACCGCTCATGCGGGAGAATGGAGATACACCCCAACCC
GAACCTCACTCTCGAGGTTGCTATTTTCAATGCTTGGAGAAATATCGGTT
ACGTATACAGTGATACATACAGAAGCTGAAGAGCCTCCGCATCACGTTCC
TTCCGACCCCGCATTCCGTCGATCAAATATTGTTCTCTGGTACTTCTTCC
TTTGGGGTGCAGGTTGACTCGACCCTTTTCAGCTCAACTGCAAACTCATT
TAGCCAGGGTGGCCGCGGCGTACGCAGCGCCCGAGACGCGGGAGTACCAG
GTCCTGGCTCGTACAGGGCTACTTCCTCTCTCGGTCACCAGGCGAGAAGT
TGAAGCCTTTTCATTGAACACGCTTGAAATCCCTCTGCTCTCCCCTCTCT
CGATTTTCCTGAAGCTCGTTGAAAAGTTGAATCAACCACCCAATATTATC
CTGGTTTGCCATGGTTTTGAGTAGTCTCTTATCCCGCGAACCTGACGAAA
GTGGTAGGCGATTCAAGGAATAGGTAAAAGGTGGCCTCGACCGGAGGGCT
GCGCAACTTTCTGTTTGAGTGAATAGCACGTTTACCTTCACTGCCTGGGT
TGACGCGAACCGCTTCTCCGTCGTACCGAAGAGCACAGAAACCGGGCTGG
AAAAACATCGCAGGTCGTGTATTGTACACCGTAGGTGCTTGCTTTACCGA
CAGAGTGAGAGCATAAGCGATAGGCAAAGGCTGATGAAAAGTACACTGTC
GCTCTGCGGGCTCTTCCTTTTACTCTGTCACGAACAGGCTGAACCTGCTA
AATATATACTGACGAGTTGGCCCTTTCGTCCCATCCCGTCACGACAAACA
GATTTCTTCTACGTGCCCAACGGCACCCCAACCGAAATTCGGCACGAGCG
TACGGTGCGCCTTAGAGGACGGGTTAGTTGGCTGAACGGATGGCGCGGTG
TGCACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig871:10953..16810+

>mRNA_P-littoralis_Contig871.4.1 ID=mRNA_P-littoralis_Contig871.4.1|Name=mRNA_P-littoralis_Contig871.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig871:10953..16810+ (Pylaiella littoralis U1_48)
TGTGCGAATAGATCAACAAGAGACAGAGATCCAAGAAGCAAAGGGTCCAC
CTCGTCCCCATCATTGAGTGAAAGTCGGATCTCGTGGCCATCGTCATCGT
TGCCACGGCCTGTGACCACGTTTGGTACGGGGAGTCGAGAGAAGGCCGGC
CAGGTCCTGTCGCCAGGATTCAAGGGGTACACGCAGAACACCGTTGGGAA
TCCGGGACCAGGGGCATACTATAATGTTCCCGGCTCACTGGGAATTCAGG
TTGACTCGACCCTTTTCAGCTCAACTGCAAACTCATTTAGCCAGGGTGGC
CGCGGCGTACGCAGCGCCCGAGACGCGGGAGTACCAGGTCCTGGCTCGTA
CAGGGCTACTTCCTCTCTCGGTCACCAGATTTCTTCTACGTGCCCAACGG
CACCCCAACCGAAATTCGGCACGAGCGTACGGTGCGCCTTAGAGGACGGG
TTAGTTGGCTGA
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