mRNA_P-littoralis_Contig87.207.455 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.207.455
Unique NamemRNA_P-littoralis_Contig87.207.455
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.207.455 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.930e-41
Identity = 115/235 (48.94%), Postives = 130/235 (55.32%), Query Frame = 1 
Query:   82 MAHKGLWPREYNNRVEECGVRGFEID-GLPRKSGRAVALPSTTSAKATTAGGGSNGSYHLGLLLETSVNAADASETEG-----QREHDVSSSLSSAFDFACXXXXXXXXXXXXXXXXXXXXXXXXXXNEESVSFDRVCALRGKVVQIFTFFHPADD----SSSGKG-TAAAGSPRTTSVSLGLEHTAERAAWNSTASCVAIGDASGRIHFVTGEGTLLFSQPLAKPIHRGSEGSE 753
            MAH+GLWPREYN R  E GVR    D  LPRKSGR    P+        AG   NGSYHL LL E  ++              +REH   SSL SAFDF C                            E V FDRVCALRG+VV IFTFFH   +    SSSG+G TAAAG   ++SVSL L H AE  AWNSTASCV +GDASGR+HFVT EGTL+FSQPL   + R    S+
Sbjct:    1 MAHEGLWPREYN-RAGEAGVRTLAADDALPRKSGRGGEAPA--------AGSSGNGSYHLDLLFEAPMDNXXXXXXXXXXXGTRREH--CSSL-SAFDFVCSSSGTTAEEGG-----------------EGVGFDRVCALRGEVVHIFTFFHAGAEEVGGSSSGEGATAAAG--ESSSVSLELGHPAECGAWNSTASCVVVGDASGRLHFVTAEGTLIFSQPLLTNLARDGSSSD 204
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BLAST of mRNA_P-littoralis_Contig87.207.455 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 9.050e-14
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:  550 TAAAGSPRTTSVSLGLEHTAERAAWNSTASCVAIGDASGRIHFVTGEGTLLFSQPLAKPIHRG 738
            TAAAG  +++SVSL L H AE AAWNSTASCV +GDASGR+HFVT EGTL+FSQPL   + RG
Sbjct:   25 TAAAG--KSSSVSLELGHPAECAAWNSTASCVVVGDASGRLHFVTPEGTLIFSQPLLTNLVRG 85
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BLAST of mRNA_P-littoralis_Contig87.207.455 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.870e-10
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:  448 EESVSFDRVCALRGKVVQIFTFFHPADDSSSGKGTAAAGSPRTTSVSLGLEHTAERAAWNSTASCVAIGDASGRIHFVTGEGTLLFSQPLAKPI 729
            EE  S +RVC L G    +  F    DD+    GT A     T S ++ L   AE   W+STAS + IGD +G++HF   +GTLLFSQPL KP+
Sbjct:   67 EEQRSLERVCVLSGTTAHLLAF----DDAEGDNGTVADNQEHT-STTVQLSAAAECGDWDSTASYLVIGDCTGKLHFYLADGTLLFSQPLIKPV 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.207.455 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSU3_ECTSI1.930e-4148.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ38_9PHAE9.050e-1469.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDW9_9STRA1.870e-1043.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:549200..552946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size776
Hectar predicted targeting categoryother localisation
Exons4
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791749.228983-CDS-P-littoralis_Contig87:549199..5492331680791749.228983-CDS-P-littoralis_Contig87:549199..549233Pylaiella littoralis U1_48CDSP-littoralis_Contig87 549200..549233 -
1680791749.2425895-CDS-P-littoralis_Contig87:549772..5499651680791749.2425895-CDS-P-littoralis_Contig87:549772..549965Pylaiella littoralis U1_48CDSP-littoralis_Contig87 549773..549965 -
1680791749.2585857-CDS-P-littoralis_Contig87:550658..5510351680791749.2585857-CDS-P-littoralis_Contig87:550658..551035Pylaiella littoralis U1_48CDSP-littoralis_Contig87 550659..551035 -
1680791749.271582-CDS-P-littoralis_Contig87:552776..5529461680791749.271582-CDS-P-littoralis_Contig87:552776..552946Pylaiella littoralis U1_48CDSP-littoralis_Contig87 552777..552946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.207.455prot_P-littoralis_Contig87.207.455Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 549200..552946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.207.455

>prot_P-littoralis_Contig87.207.455 ID=prot_P-littoralis_Contig87.207.455|Name=mRNA_P-littoralis_Contig87.207.455|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MHSHSRRGERLRDKQKDLERREKLHTTMAHKGLWPREYNNRVEECGVRGF
EIDGLPRKSGRAVALPSTTSAKATTAGGGSNGSYHLGLLLETSVNAADAS
ETEGQREHDVSSSLSSAFDFACSGSGTVTPAAAVTTGGGGRGEGKTKENE
ESVSFDRVCALRGKVVQIFTFFHPADDSSSGKGTAAAGSPRTTSVSLGLE
HTAERAAWNSTASCVAIGDASGRIHFVTGEGTLLFSQPLAKPIHRGSEGS
EGQPGIEH
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mRNA from alignment at P-littoralis_Contig87:549200..552946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.207.455 ID=mRNA_P-littoralis_Contig87.207.455|Name=mRNA_P-littoralis_Contig87.207.455|organism=Pylaiella littoralis U1_48|type=mRNA|length=3747bp|location=Sequence derived from alignment at P-littoralis_Contig87:549200..552946- (Pylaiella littoralis U1_48)
ATGCACTCGCACAGCAGGCGAGGAGAGCGGCTGCGAGACAAGCAGAAGGA
CCTGGAGAGAAGAGAAAAACTCCACACCACAATGGCTCACAAAGGGCTAT
GGCCCCGAGAATACAACAACCGTGTCGAGGAATGCGGGGTCCGAGGATTT
GAAATAGATGGGCTGCCGAGGTGAGAAGAAGAGAGACAGAGAGAACTTGA
CTTTAGCATTTGCCCAAGGGAGGTTTGATTCCGAAAAGCCGAAAAGCACT
AGACTACCACTGCTATGTTCGACGCTGGCAGGCAACAGCAGGCAAGTCCT
CCTTCTTCTTTTGCTATAGCATGCCAAGTGGGCGTTTCTAGCTGCAGATG
CTGAGGCCGTCATGCTACTTTCTATTGTGGTTCACTATACTGCTGTCGTT
AACAGCAATAATACCCCGTAGGTTGCGTAAGATACGACACCTCCATGATA
ACGGCAGTAGCATCGTCGTGTAAATCGTGTGATCGTGCAGCGTGTAATCG
CTTTCTTTTGTTATTACACCGCTTGTTGTCCAATCTGTGCGGTACAGCAA
TGGGTAGGGCCCTGTGAAGCATTTACATTTTACTATGCAGGAGACATTGT
AATACCCATCGTTAGCACACACCCTGTTGTAGCTTTGATCCCGTACGTGC
CTTATGACACCGGTGATATGAGACATGACACCCCCTAGAGACTCACACCG
CGGCTTCATCTGAATTCGCAATGTGCAACACAGAGTACAGAATATATACT
TCGTATATACTTGTACTCGGAGTATATTTTTGTGACGGGGGTGTGGTATG
ATATAATCATGTCACAGGTGTGATCAAGTGCACGTACGGGATCTCCGCTA
CAGCAGGGTGCGTGATAACAAAGGTTGTGATAATGTCTCTGACGTTTGAT
AGTAAAGTGCATCAAAGGTGCATCACTGGGCCCCAGCCACCGTTTCGCAC
AGGGCGTGACAAAAAGCGGTGTGAGACCGTTTCGGCTCTGTTATTTTGTC
CTCTGTTTTTTCTCCTGAGGTAACCCCCCCCCCCAATAACAGAGAGCCCA
AACGGTTTGAAAAGCTAACAGGAGACAGCATCAAGCAGAACTCGACCCCT
GGGACACCAATCGAGACTAAAAGTGTTGGAGGGTCCTCCAGTGTTCTCAT
GTTGGCCACAGCCAGGAAATTTGGTGGGTGTGGGCTTTGGCTGTGGCGAG
GTTTCGGCGGCGGGGTGGGTTGAGGTAGAAACATCCGGTGAAAAAAAAAC
GCTGTTCGAGCCTGTTTTATGGCCGGAAAAACAGGAGCAAAGTCTGTTAT
TTCGTTTCATCTGTTTTTCCAACTCAAACACACACCGCCGCCAACATCTC
GCCACAGCCCGCACCCGCTGCCACCAAACTTTCTGTGGCCAACTTGAGAA
CATAGGAGCACACGCTCCATCAGGTTTGATCTGCATCTTTGTCCCAGGGG
TCGAGTTCTGGTTGGTGCTGTCGCATGATATGTCCGACATGGCTGTTGAC
AGGTGCGGGGGGTAGGGGGGTTCTCTGGTTGGATTTGAGTAGGGGGGCCA
AAACGCTAGACCAAAATAGCGTTGACCTTTAGAAACAGCCTGACAATAAC
GAGAGATAAAAAATCAAACGACTTGCGGTATGTTGGGGGGGTGATATCCT
ACCGCATTGCTACACTGCACTTACTCTTCGCACTTCCTGCTGAACCCTGC
AGGTCGTGATATGCATACATACCGGTAGTTCTGCTCAACAAAAGGCAGCG
ATGTTGTCACAACGAACGAAAACAAAACTGTTGTGAAGATAGCGGAAGCA
TGGTGGACTTCCCAACATCAGTCAAAGCTGTAGCAACAATTTGCCATCAT
CAGTCCAAACTACGAAGACGTGATACCAGGAGGTCCGGCCGTGCATCTTT
GGTGCTACCAGGAAGTCCGGGCGAGCAGTGGCATTACCATCAACAACATC
AGCAAAAGCAACAACAGCAGGAGGAGGCAGCAACGGGAGCTATCACCTTG
GTCTCCTGCTGGAAACGTCCGTCAACGCCGCCGACGCCAGCGAAACTGAA
GGTCAGCGAGAACATGACGTATCTTCGTCTTTGTCGTCAGCATTCGACTT
CGCATGCTCTGGCAGCGGCACCGTCACTCCAGCAGCAGCAGTAACAACAG
GAGGAGGAGGAAGAGGGGAGGGAAAGACGAAGGAGAATGAGGAGTCAGTC
AGCTTCGATCGTGTGTGCGCTCTCCGCGGCAAGGTGGTCCAGATCTTCAC
CTTCTTTCACCCCGCCGACGACAGCAGCAGCGGAAAGGGTGAGTACAGTA
GTAGTGATGAGAAGTCTTCTCGCCTTGCCCGCCTGTTTTCAAGCGTAGGA
CAGCCGCCCGCCCCCACCACACTCTAGTGCAGAAATCGTCCGTTTATTGG
CAGTTTCTATAAAATGCTTCAGATTATCCCGCTGGAAGCCGAAATCGTGA
AGGAAGGGTTTCCAGATGATGCGTGCATAACGTTTACGTCAGGGACAGGC
AAGGTGCGACAGACGCGCTACACCGACTGGTATTGGAGCCCCGTAGTCCA
TAGAAAGGTGTGTGTACGAAGTATGATCTATATATCGCCTTGTACGATCG
AGAGCAGCCCGGCAAGGGTGGAGGGGCGAGGGGAGGGAGGCATTCAAAAC
GAAGTGTCAAGTGTAAAATAGTAAGCATCGCCGCTGCTGCGGTAGAAAGC
AGGTGTAATTGCTTGGTCTACGTGCTGTAGCGGGCCATCTGCCCCTGTTT
TGCTCATTGTGGAGACGTGATGGCGAGGAACCGAGTAACGAACAGCGGGT
CTTGGAATGCCTTGTGTGTTTTTCGTGCGTTCCGGTTGTCGTAAAGCGAG
TCGTCCTTGATCTTTCAATCGCTTCTGCAGTATTCTTATGCTCCTCTCGC
CACCCCCACCGGCACCCTGCCCCCGCCCCCGCCCGTTCCCCCGTTCCCGC
CACTGCCTCGCCCCTCCGTCCCCAAAAATAGGCACTGCCGCCGCCGGGTC
CCCGCGAACAACGTCGGTCTCTCTGGGACTTGAGCACACCGCCGAACGTG
CCGCATGGAACTCCACGGCGTCTTGCGTCGCGATCGGTGACGCTTCGGGG
CGAATTCACTTCGTGACTGGTGAAGGAACTCTCCTCTTCTCGCAGCCGCT
CGCCAAGCCCATCCATCGTGGCAGGTAAAACAGCCAAAACACACAACATC
CGATGCACATGCTTGGTATGGAAAACTAAAAGTATGTTCGATTTTACGCC
CCATTTTTTTTTTTAGGGGGGGAGGCGCGTCCTCGTGTTTCGGTTGCCTT
GGCCATTTGAACATTCAACGCGTTTCCCTATCGAGTCGGAGCATTATTGA
TATTTCTTACAGGGTCACCACCAACATTGGGTATCTCTTGATGGTCTAAG
TTTTTGGGGAGGGGGGAGAGAGGGGGAGGGGGGAGAGAGGGGGGGGGGGG
GGCATTTTTAAAAGCTCCGTGAATTTCTCCGCAGAGACGCATCATAGGGG
ACGCCAATGTCAAAAGCCCGTTTTCATTTTACCTGGCTGGCTATAAACAC
TTTTCCGAGCTCGTTTTTTTTACACTCAACGGACCTCGCGCAATTGCTTG
AATGCGTGCGCTCCTGGTTCTGGCCTCTTTAAAACACTTTATGGAACTCT
TGCGCTTCCTTGGATGCTACGTGGGTGCTCATGACCTCTACATGTACTGC
ATGTCGGCAGCAGCGAAGGGTCCGAGGGGCAGCCTGGCATTGAACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:549200..552946-

>mRNA_P-littoralis_Contig87.207.455 ID=mRNA_P-littoralis_Contig87.207.455|Name=mRNA_P-littoralis_Contig87.207.455|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig87:549200..552946- (Pylaiella littoralis U1_48)
ATGCACTCGCACAGCAGGCGAGGAGAGCGGCTGCGAGACAAGCAGAAGGA
CCTGGAGAGAAGAGAAAAACTCCACACCACAATGGCTCACAAAGGGCTAT
GGCCCCGAGAATACAACAACCGTGTCGAGGAATGCGGGGTCCGAGGATTT
GAAATAGATGGGCTGCCGAGGAAGTCCGGGCGAGCAGTGGCATTACCATC
AACAACATCAGCAAAAGCAACAACAGCAGGAGGAGGCAGCAACGGGAGCT
ATCACCTTGGTCTCCTGCTGGAAACGTCCGTCAACGCCGCCGACGCCAGC
GAAACTGAAGGTCAGCGAGAACATGACGTATCTTCGTCTTTGTCGTCAGC
ATTCGACTTCGCATGCTCTGGCAGCGGCACCGTCACTCCAGCAGCAGCAG
TAACAACAGGAGGAGGAGGAAGAGGGGAGGGAAAGACGAAGGAGAATGAG
GAGTCAGTCAGCTTCGATCGTGTGTGCGCTCTCCGCGGCAAGGTGGTCCA
GATCTTCACCTTCTTTCACCCCGCCGACGACAGCAGCAGCGGAAAGGGCA
CTGCCGCCGCCGGGTCCCCGCGAACAACGTCGGTCTCTCTGGGACTTGAG
CACACCGCCGAACGTGCCGCATGGAACTCCACGGCGTCTTGCGTCGCGAT
CGGTGACGCTTCGGGGCGAATTCACTTCGTGACTGGTGAAGGAACTCTCC
TCTTCTCGCAGCCGCTCGCCAAGCCCATCCATCGTGGCAGCGAAGGGTCC
GAGGGGCAGCCTGGCATTGAACAC
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