mRNA_P-littoralis_Contig87.170.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.170.2
Unique NamemRNA_P-littoralis_Contig87.170.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: D7G927_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G927_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.210e-123
Identity = 186/199 (93.47%), Postives = 194/199 (97.49%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQVPWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            MKV SICT+RYNRDTAEPVMLSQV +LSS+GFFQRQGIKEMCTFFSKTIVKRTQPGQRQ+VQHED YN+HVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQ+AEQV WQSEIRH+AIRFPPM KMIVDYQDPAKADKITKIQRDLDETTEVLH+TIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS
Sbjct:    1 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHED-YNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A836CN50_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN50_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.440e-96
Identity = 149/198 (75.25%), Postives = 171/198 (86.36%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQVPWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 675
            MK+ +I  LRY  DT E ++LSQ  DLSSFGFFQR GIKEMCTFFSKTIVKRT  GQRQTVQHED YN+HVY+R DGLA T+TAD+EYP RVAFVLL  +++QF+EQ+ WQ+E R +AI F PM + IVDYQDPAKADKITKIQRDLD+TT VLHKTI++VLERGV+LD+LVDRSD LSRQSKMFYKQA+KTNSCCVV
Sbjct:    1 MKILAITMLRYGADTPEAIVLSQASDLSSFGFFQRAGIKEMCTFFSKTIVKRTPAGQRQTVQHED-YNVHVYVRHDGLAATITADMEYPMRVAFVLLMNMMDQFSEQIQWQAETREEAIVFAPMQQAIVDYQDPAKADKITKIQRDLDDTTNVLHKTIESVLERGVKLDDLVDRSDSLSRQSKMFYKQAKKTNSCCVV 197
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A7S2V281_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V281_9STRA)

HSP 1 Score: 288 bits (738), Expect = 2.790e-91
Identity = 139/200 (69.50%), Postives = 171/200 (85.50%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHED-SYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQVP-WQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 675
            MK+ S+  LRY RDTAEPVMLSQ  DLSS GFFQR G+KE+ TFF++ +VKRT PG RQTVQH +  YN+HVY+R DGLAG VT+D+EYPPRVAFV+LTQLL+QFA  V  W++EIR +AI++PP+ + ++ YQDPA+ADK+TKIQRDLD+TTE+LHKTIDNVLERG +LD LV+RSDDLSRQSK+FY QARK NSCC++
Sbjct:    1 MKLISVAILRYMRDTAEPVMLSQAADLSSIGFFQRNGVKELLTFFARMLVKRTSPGMRQTVQHNEFDYNVHVYVRADGLAGAVTSDMEYPPRVAFVMLTQLLDQFALDVRGWETEIRSEAIQWPPLGEALIRYQDPAEADKVTKIQRDLDQTTEILHKTIDNVLERGEKLDSLVERSDDLSRQSKLFYSQARKANSCCLI 200
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: W7TQ86_9STRA (Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ86_9STRA)

HSP 1 Score: 275 bits (702), Expect = 6.250e-86
Identity = 133/200 (66.50%), Postives = 166/200 (83.00%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQVP-WQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            MK+ +I   RY RDT EP++LS V +L SFG+FQR GI+EMC F SKT++KR QPGQRQT+QHE+ YN+H ++R DGL GTV ADLEYPPRVAFVLL+ LLE+FA  +  W S  + +++ +PP+ + I +YQDPAKADKITKI+RDLDETT++LHKTID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC +S
Sbjct:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEE-YNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A6T5MNT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MNT8_HETAK)

HSP 1 Score: 268 bits (685), Expect = 2.380e-83
Identity = 130/201 (64.68%), Postives = 163/201 (81.09%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHED-SYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQVP--WQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 675
            MK+ SI  LRY RD  EPVML+Q  DLSS GFFQR G++E+ TFFSK +VKRT+PG RQTVQH +  YN+H Y+R DGL+GTVTAD+EYP RVAF+LLTQLL+Q+A ++   W+ E R++ I FPP  + +V YQDPA ADK+TKIQRDLD+TTE+L+ TIDNVL RG +LD LV+RSD+LSRQSKMFY QA++ NSCC++
Sbjct:    1 MKIVSIAILRYGRDVEEPVMLTQACDLSSLGFFQRSGVRELLTFFSKLMVKRTEPGTRQTVQHNEFDYNVHTYVRADGLSGTVTADMEYPARVAFLLLTQLLDQYATELSGVWERETRNEVIAFPPADQALVQYQDPAAADKVTKIQRDLDQTTEILYNTIDNVLARGEKLDNLVERSDELSRQSKMFYSQAKRANSCCLI 201
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A6U0IUG2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IUG2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.260e-80
Identity = 131/201 (65.17%), Postives = 161/201 (80.10%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQV--PWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            MKV SI  LR   D AEP+ +S   +LSS+GFFQRQG+KEM TFFSKT  KRT PGQRQ+++HE SY +H Y+R DGLAGTVT DLEYP RVAFVLLTQLL++F + V   W+S    +++ FP + + +  YQDPA ADK+TKIQ+DLDETT++LHKTID+VLERGV+LD LV+RS+DLS QSKMFYKQA+KTNSCC +S
Sbjct:   16 MKVVSIAILRTGPDVAEPIPVSMACELSSYGFFQRQGVKEMLTFFSKTFTKRTDPGQRQSIEHE-SYVVHCYVRSDGLAGTVTTDLEYPARVAFVLLTQLLDEFQQTVGDSWRSVTTPESVTFPKIEEYLQKYQDPAAADKVTKIQQDLDETTQILHKTIDSVLERGVKLDSLVERSNDLSAQSKMFYKQAKKTNSCCTIS 215
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A7S2I938_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I938_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.180e-78
Identity = 130/209 (62.20%), Postives = 161/209 (77.03%), Query Frame = 1 
Query:   58 SPTL*KCAMKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQV--PWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            +P   K  MK+  +  LR  +D  EP+ L+   DLSS+G+FQRQG+KEM TFFSKT  KRT PGQRQ++ HE SY +H Y+R DGLAG VT+D EYP RVAFVLLTQLLE+F + V   W++    +++ FPP+   +  YQDPA ADK+TKIQ+DLDETT VLHKTID+VLERG +LD LV++SDDLSRQSKMFYKQA+KTNSCCV+S
Sbjct:   52 TPKRTKNKMKIVGLTILRTGKDVEEPIPLTTACDLSSYGYFQRQGVKEMLTFFSKTFTKRTAPGQRQSITHE-SYVVHCYVRSDGLAGVVTSDAEYPSRVAFVLLTQLLEEFLQTVGDSWKTVTAPESVAFPPIETYLQKYQDPAAADKVTKIQQDLDETTSVLHKTIDSVLERGEKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVIS 259
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A7R9W5E6_9STRA (Hypothetical protein n=4 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9W5E6_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.180e-78
Identity = 128/204 (62.75%), Postives = 158/204 (77.45%), Query Frame = 1 
Query:   73 KCAMKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQV--PWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            K  +KV  I  LR   D  +P+ L    +LSSFGFFQRQG+KEM TFFSKT  KRTQPGQRQ++ HE  Y +H Y+R DGLAG VT DLEYP RVAFVLLTQ+L++F   V   W++    +++ FPP+   +  YQDPA ADK+TKIQ+DLDETT++LHKTID+VLERG +LD+LV+RSDDLS+QSKMFYKQA+KTNSCCV+S
Sbjct:   26 KTMVKVVGISILRTGSDLPDPIPLCMACELSSFGFFQRQGVKEMLTFFSKTFTKRTQPGQRQSITHEQ-YVVHCYVRSDGLAGAVTTDLEYPARVAFVLLTQILDEFTGAVGDSWKTVTTPESVSFPPIENYLQKYQDPATADKVTKIQKDLDETTQILHKTIDSVLERGSKLDDLVERSDDLSKQSKMFYKQAKKTNSCCVIS 228
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A6T5VLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VLC8_9STRA)

HSP 1 Score: 254 bits (650), Expect = 3.620e-78
Identity = 127/200 (63.50%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQV--PWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 675
            MKV  +  LR      EP+ L+   DLSSFG+FQRQG+ EM TFFSKT  KRTQPGQRQ+V HE SY +H Y+R DGLAGTVT+DLEYP RVAFV+LTQ+L+ F +Q    W+ E R +++ FP M + +  +Q+PA+ADK++KIQ+DLDETTE+LH+TID+VLERGV+LD LV+RSDDLSRQSKMFYKQA+KTNSCC++
Sbjct:    1 MKVVGLSILRTGPSLDEPLPLAVANDLSSFGYFQRQGVSEMLTFFSKTFSKRTQPGQRQSVTHE-SYIVHCYVRGDGLAGTVTSDLEYPARVAFVMLTQMLDDFVQQFGDSWKRETRPESMTFPKMEEYLEKFQNPAEADKLSKIQKDLDETTEILHQTIDSVLERGVKLDALVERSDDLSRQSKMFYKQAKKTNSCCII 199
[Close]
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Match: A0A7S2LY35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY35_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.870e-77
Identity = 133/202 (65.84%), Postives = 160/202 (79.21%), Query Frame = 1 
Query:   82 MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIVKRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQFAEQV--PWQS-EIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDETTEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 678
            MKV SI  LR    +AEP  ++   DLSS+GFFQRQG+KEM TFFSKT  KRT+PGQRQ++ HE SY +H Y+R DGLAG+VT D EYPPRVAFVLLTQLL++F       W+S     ++  FPP+ + IV YQDPA ADK+TKIQ DL+ETT++LHKTID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:   40 MKVVSITILR-TTPSAEPTPIAMACDLSSYGFFQRQGVKEMLTFFSKTFTKRTEPGQRQSISHE-SYVVHCYVRSDGLAGSVTTDAEYPPRVAFVLLTQLLDEFLSTNGDSWKSMPTLTESTVFPPLEEYIVKYQDPASADKVTKIQNDLEETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.170.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G927_ECTSI1.210e-12393.47Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CN50_9STRA1.440e-9675.25Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V281_9STRA2.790e-9169.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TQ86_9STRA6.250e-8666.50Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae Ta... [more]
A0A6T5MNT8_HETAK2.380e-8364.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U0IUG2_9STRA1.260e-8065.17Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2I938_9STRA1.180e-7862.20Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9W5E6_9STRA1.180e-7862.75Hypothetical protein n=4 Tax=Eupodiscales TaxID=33... [more]
A0A6T5VLC8_9STRA3.620e-7863.50Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2LY35_9STRA1.870e-7765.84Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:344600..351238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G927
Preferred nameYKT6
PFAMsLongin,Synaptobrevin
Model size1771
Max annot lvl2759|Eukaryota
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K08516,ko:K18999
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138
KEGG ModuleM00001,M00003,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096
Exons6
Evalue8.8e-131
EggNOG OGsCOG5143@1|root,KOG0861@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-15_002130.1
EC3.1.3.16,4.1.2.13
DescriptionSNAP receptor activity
Cds size600
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.170.2prot_P-littoralis_Contig87.170.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 345690..351157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791746.2275856-UTR-P-littoralis_Contig87:344599..3456891680791746.2275856-UTR-P-littoralis_Contig87:344599..345689Pylaiella littoralis U1_48UTRP-littoralis_Contig87 344600..345689 -
1680791746.3209574-UTR-P-littoralis_Contig87:351157..3512381680791746.3209574-UTR-P-littoralis_Contig87:351157..351238Pylaiella littoralis U1_48UTRP-littoralis_Contig87 351158..351238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791746.242301-CDS-P-littoralis_Contig87:345689..3458271680791746.242301-CDS-P-littoralis_Contig87:345689..345827Pylaiella littoralis U1_48CDSP-littoralis_Contig87 345690..345827 -
1680791746.2582884-CDS-P-littoralis_Contig87:346247..3463131680791746.2582884-CDS-P-littoralis_Contig87:346247..346313Pylaiella littoralis U1_48CDSP-littoralis_Contig87 346248..346313 -
1680791746.2676601-CDS-P-littoralis_Contig87:346660..3467591680791746.2676601-CDS-P-littoralis_Contig87:346660..346759Pylaiella littoralis U1_48CDSP-littoralis_Contig87 346661..346759 -
1680791746.2762506-CDS-P-littoralis_Contig87:347128..3472321680791746.2762506-CDS-P-littoralis_Contig87:347128..347232Pylaiella littoralis U1_48CDSP-littoralis_Contig87 347129..347232 -
1680791746.293282-CDS-P-littoralis_Contig87:347632..3477151680791746.293282-CDS-P-littoralis_Contig87:347632..347715Pylaiella littoralis U1_48CDSP-littoralis_Contig87 347633..347715 -
1680791746.3071425-CDS-P-littoralis_Contig87:351047..3511571680791746.3071425-CDS-P-littoralis_Contig87:351047..351157Pylaiella littoralis U1_48CDSP-littoralis_Contig87 351048..351157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.170.2

>prot_P-littoralis_Contig87.170.2 ID=prot_P-littoralis_Contig87.170.2|Name=mRNA_P-littoralis_Contig87.170.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=200bp
MKVFSICTLRYNRDTAEPVMLSQVEDLSSFGFFQRQGIKEMCTFFSKTIV
KRTQPGQRQTVQHEDSYNIHVYMRQDGLAGTVTADLEYPPRVAFVLLTQL
LEQFAEQVPWQSEIRHDAIRFPPMAKMIVDYQDPAKADKITKIQRDLDET
TEVLHKTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS*
back to top

mRNA from alignment at P-littoralis_Contig87:344600..351238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.170.2 ID=mRNA_P-littoralis_Contig87.170.2|Name=mRNA_P-littoralis_Contig87.170.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6639bp|location=Sequence derived from alignment at P-littoralis_Contig87:344600..351238- (Pylaiella littoralis U1_48)
GGTCTGCCCTCTCCGGGGTGGCTCTCGGTGTGTCCACAACTGCTGTCTGT
CTAGCAGTCCCCAACACTATAAAAGTGCGCCATGAAGGTGTTTTCCATAT
GCACGTTGCGGTACAACCGCGATACGGCGGAGCCCGTGATGCTATCGCAG
GTAGAGGACCTGTCTTCCTTCGGCTTCTTCCAGCGTCAGGGGTGAGAGAT
ATATTTACTTCCTCAAAAATGCAATATACTGCCGTCTGCCGTCTGCTACT
TGCTGCAGACGAGGGAAGCGGAAGGAATTTACTTCACTGTTGTAAGACTG
CTGTGAGACCAAATAGAGTGATGAGAGAGAGCGAGCAGTTACCTTCCCTT
CTCCCTTCTCCCTGTAAGCTCTTCCTGCGTTGCTGACTACCGAAGCATTA
CAGCATAAACAGGTTGCACATTTTAATCTATTTTAAATACTGAACAAAAC
GTCGATCCATACGGTACCATATCTGATTTGACTGCTGTGGGTGATCATAG
TCCATACCATAGGGTATATTCTATTTATTTATTTTTCCTCCTAGCACGAT
ATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAAT
GTGAGAATCAACAACAAACAAAAAAACTTTTAATACGCAAAAAAATCTGG
ATTCCTTTGTCACGAGGAGCAGCAGCAACTCTGTCCCTATTTCCTCTCCA
TTATTCCCACTCCAGCAGTATTTCACTCCCGCTCTCCCGGCGGTTACTGC
TGTTTATTCCCTCTGGTTGAGGTCATTGGAAGCAGCAGGTGAACGCCTGG
GATTACTTTGGGCGATCACTTTGCAGCATCTGGAGGAGCGAAAGCCTCCA
CCTTCTTGTCTGTCGTTGTAAATACGAGCACGTCGGTAGTTCTTGTCAAA
GCGGTACTTGGCACCTGTCCCGGTGAAGTCACACTATCTCGAATTCTTGT
CACAGCGGTAGTTCTTGGTATTTGAAAACGACGATGTCGTGAGTAAACAA
ACACACTCGACTGAACCGTCGACGAGGGCAAGGGACGGTTCAACCTTTCT
CGCGATAAAAATCACAAAAGACAAGCAGCGCAGAGGGTGGGTTGTTTTTT
GTGATGGTTCTCATATTAGCTCATCGCCAAATTTAGCTTACGTCTTTTCT
TCCTATTCCGGGCACCAGTCTACACCCTGTACACCTTTCCGTACGAAGTG
GGTGCAGCAGCGGGGGTTACACAGAAGGGAGATCACACAGGATTTTTGTT
TTAATCCACCCACCTACGGCGGTGCTTGTCTTTTCTGCTTTCCCGCTTTT
TGTCGCGAGGAGAAAAGTTTCAACCGTCTTTTAACCTAGCTGCTGTTAAG
GCCACTCTGGGTTCAGTACAAAAAGATAAGAGGGTGTGAAAGGTAACTGC
GTTGCGCTTGAAACTATCAACTGTTCAAAAAGATAAGAGGGTCTGGAAGG
GACCTGCGTGTCGCTAGAAAGCATGACTTGGAACAAGATTGAGGGCCTTG
CGCAAATGCAGCCTTCTCTCGAAGGGACGAAAAAATCAGCAGGAAAGCGT
CTTTGTTGGAGCATTTTGAACCGTAGACCGAACTTTCAGTTTCCGTAACT
TGTAACCTTCCGGGTGTTTTTGCTGACTATGTGAGCCCGGTAAATTAGCT
ACGTTCGCGTCGAATCCGCCTTTGAGTCGGGGATACACGCGCGGATAACG
GCAGCTTCGCATCATCGCACGCAGCAGATCTCCCAGTGCAGTGCAATTTC
GGACAGCATCATGCGTCCAGATACCAATCCACAAGCTCCGAAGAAAACCT
CTAGAATCGTTTCTGGCTGCCTGCTGCTGCTGCCAATATATCGGACGCCA
CTCAGCCACCACATGTATGGGCTGAGGCACTTTCGAGCAGTGTGGTTGCT
TGTGACGAGCTTGCGCTGTCGTCAACCTAAGCACAGCAGTTTTCTGGGAT
TCTCACCATTTTTCTTCCGCAAGATTATGATGAAAACATAAGGTTCATGA
TCACTTCGATCTCGCCCTATCATACAAGTACAAGTCCTACCTGACATATA
GCACAGTTTGTATCCACATAGGATCACAAGCCAAGGTTATTTATGCAAAA
TGATCCGGAAGGTTTGTGTCTCCCAACGCAAACGGGGGAGGGTATGGGAC
GTGGAGCATCCAGCAAAGTCAGGGGGGGCACCGCGAAATATTTTTTGTCT
CATAGAATTGGAAAGAAAGAATAATACCGTGAAGCCAAAAATGCGACAAC
AGAATCCCGGGATACATGCGGGGCGCCCCCTCCAGCGTGGCCTTAGTCGT
ATGTGTTCGCATACTCGCGAGGTAGTCGTTTTCCGCCCCTCAAGAAATAC
TAGAAATCCAAGATAGTGTGACGTTACCGGGATTCGGACTCACGTCCTGG
GTGTCAGGAATCTTTGATGTCGCCACTGAGCGACCGGGGCGCCTGAAGTT
TGCAGAGGGCTCGCGAAGGGAGAAAAAAAAAAAAACTCCTGTGAGACCTT
CCTTCTGTGTAACCCCGGCTGGTGCAACCACTTTATACCGAAAAATGTAG
ACTGGTTGATGCCCAGAATAAATGAAATGAAAACACACACACACCATGCA
CAGCAGGACCATGCACAGCAGGAATATGAAATCTACCGCGTGGAAGTGGT
GCTGCTTGGTAACATATTATTCGTGTTGTTCGATCTACAGCATCACCGTA
CAGTAGATGGCTGCTAAGTGCCACGCCATTTGAACAGTCTCATCGAGAGC
GCCCGGCCTTACAAAGAGTCATATAGTACTCCCTCGACAAGGCCGGTCTT
CCGCATGCCTCAGTACGGCCGGTGTCGGCACTATGAAAGATCTTCCGGGT
ATTTGGCGGCCCTGCTGAAGAGTCTTAGTGTGCATTTACTTCGAAGTATA
TGTGTATCGCACAAGGAGTGACATATGATTCGGAGGGGTGCAATGGATGA
CGGGGAGGGGCGTAGTTGGCTTAAAAATTGCAAAAATGTGTGCACCATGG
CAGAGGAGCAAAAGTGTTCACGAAGAGTGCACTGCAAACAGCAGTCAGCA
TTGTTGTAAATGTACATTTTCATCTCATCTATGACGTTCCCCGAAAGTAG
GTAAGGTCTGCCTTTTCAAACTTTGGTATTATCAAGCCCTGCGAGAAAAC
CGCCGTCGCCGCGGAGGAAGCTACCTTTGTTGAGACCGCTGGCTGGTGAG
ACGTTTACATTTGCCAGAGATTGCCACACATCAGCCAGTAGAAAATATCA
GGGCCTGCTACTGCTGCTCCTGAGGGCCCGGTATGAAACGTATGAGAGCT
TTCATACCGCTGTACCGGCAAGACGGGGCATGCAAAACCACTGTTGTGCG
ATGAAGGCGTGCTTCGCAATCGTGTTGGGCTACATATAATAGCATTGAAC
GGTGAGTCAGCAAGACGGCAGGGCTCCGCCGTAGTTCCTATTCGCAGGTG
TTGCGCATTTGTTTCGACGGAAAGCTGATGGGAATATTTCGTGGGTGCCG
CGTACTGTTTTATTTGGTTCCAGAATCAAGGAGATGTGCACCTTCTTCAG
CAAGACCATCGTCAAGCGCACGCAACCCGGACAGCGGCAAACCGTCCAGC
ATGAGGGTGAGAGGCGCCCCTACCAACATTTGTAGCACTGCTGCGTCGAA
GGGAAATGCAGAGCCATAGGTGTAATGGTTCAGCGCCCACATTTGGTGGC
CGCGTGTCACTCCTTACCCCGCGTCTCAAGAGCCAGCAAACCCTCCATAG
CTCCCACCGCTATAGGCCCGCCACAAGACGCAAGCGAGATCGATTCTCCT
GTCAGACTGCTCATTCTGCAGAACCGATATCGCACTGGTGATCGGATACG
ACGCACCACCGGGGCTCCTGGTACTATACACCTAGAGAATGTTGGGCCAC
CGTATTCTGGGTCGTTTCATTCACTTGTGTTACCAATCTGCTTTGTTATT
TTTGTTCTCCCGTGATGTGTTTGATATGGCTACCATCGGGATCTATCGCA
ACGCAGACTCGTACAACATACACGTGTACATGCGGCAAGACGGATTAGCA
GGGACAGTGACGGCGGACCTGGAGTACCCCCCACGAGTGGCGTTCGTGTT
GCTCACGCAGGTGAGTCGAGTCGAGAGCAGGGTCATCATCCTTTTGGTGC
GTGTTGACCACGTGGTATAAAGCCACAAACCGCAAGCATGTATCTTCTAC
AAAACGGACCCCGGCTTCACGCGGGCCGCGAAATCTATGACCGGGATGCC
GAAAGAAGTGCCTACGTGGGAGCTTGGTTTGAGATGACGCTGATGGTGTG
CGGGTTGATGTGAGAAAAATAATCGTGTGATACCATCCGGGATTATTTAC
AGCTTAAACTGATTGCCCTACCTTTCCTTCGCCGGGTACTTCACCGTGGT
TTTATTCGGGCACAGCGTGCGTGATGAGCTCTTCGTCCTGCTCTCTATTG
ATTCATCTTTGGACCGTCCGTATCCGCAGTTATTGGAGCAGTTCGCGGAA
CAAGTACCGTGGCAATCTGAGATCCGACACGACGCAATTCGGTTTCCTCC
TATGGCCAAAATGATTGTGGACTACCAGGTGAGTTCCTTCCTGAACGGAA
ACCCCAAGACATGTTGGCTGCATTTCGCTCTATTCATGTCTGTTTGGCAC
CCCACCTCTTTTCAGTGCGTAATATTTCGTATCCAGATTAATGATGAGCA
CTGTCTTTTTGTCTAAGAGGATTTATTTGTTTTAGTATGCATTCGGTAGC
CCTGAACGCCATGTCGCGTCATGACTTCAATAATTCAAGGCCACCAGGTA
CGGTGTGACTGTTCTCAATTGACCCTGCGAGATGGACTATGAAAGTACGC
TTATTGCGATGTTGGGAGAGGAGCTGATGTAACCCACGTCGTGTCTGTTT
GGCCTCTTGTATGTACGCCGAACAGGACCCGGCGAAGGCCGACAAGATAA
CCAAGATTCAGCGCGATTTGGATGAGACGACCGAAGTACTGGTGAGAGAA
AAAAATCACTCATTTACGCCCGTCACCTGTTCATTGCCTTGTCCTTGCGT
GTTGAATACGAACCTTCTTGTTTGAAAGTCTCGACGGGTGTTTCTGCTGG
TATCTTTGCGGCGGCTGCGAACTCTATTCGATGAATCATTTTCCTTTCCT
TGTCGGCAGATGGCTCCATCCTTCTGTTTCTTCTCATGCTGTGGCGCTGA
TCATGTGACTACATCTTGAACCACTCTTCCTTCGGCCTTTACTTGTTCCG
CTTTTTTGCATAAATTCTGTAGGAAGACATCGCCCGCATGTTTTGGTGCC
TGGGATCTCAAAACGTGTTCAATGTTGACTTCCCTTGGATACGACCAAAA
CGTTCTCAATATTTCCAATTCGTCGTGTTGTATTTTTTCGTCAACAACTC
CGTGGCCGCAGCACAAAACAATCGACAACGTGTTGGAGCGAGGGGTAAGA
CTAGACGAGCTGGTGGACCGATCGGACGACTTGAGCCGACAATCGAAGAT
GTTCTACAAGCAAGCAAGGAAAACTAATAGCTGCTGCGTCGTGAGCTAAA
TGACAATAAGGGCAGCTCGACGAAGAAGGGAGGCAGACGGCGGCAGCTGA
ATGATTTCTCCGCCCACCCTCACGAAGAAATCATCAATCGAAAATGGGGC
AGCGGCGAGTTTAGCTGGCCTTTTCATCTCTTGTGTTTCTGACTGACAGC
CCCCGTTTCAAAGGGGCTGCACGTGGTTGGCGCTTTCGTGCAGTTCCAGC
GATTGTATATGCTGTATTGAAGGCCTGTGGATTCGACCACCAGGAATCGT
CTTGACTGTCGTTGTCGTCCGTTTCCCAAGGTGGCCCCCATCTCCCGTCC
CCCGTCATCCGCCGCCACTCGATTCTGTTTATGTTAATGAACCTGCGAGA
TTTTTTTTGCGGTTTTGGCGATTTGTTTGGAAATGGGTGTCACTCCTTAT
TTTTTATATTTATATCTCAGTCACTGGAGAGGGTGTAATAAGGCTGTGCC
GGCCGTTGATGCCCCGTTCGGGACAGAAAATCGACCATTCAGAAGTACAT
GGTGCGGAATAACAGGGTGTTGCCAGTCAACCTGGTGTAAGTAAATGCAG
ACGGCTAGTGTGTCTGGTCGTGTGCCGCACGCCGGACTCACCAGATCGAT
GCATGTGGTGATAAAATCCTTGCAAAGGTGTAATTGTGATGTTGGGTGTG
CATTCTGGGCGCTATGTTGCGGAACAGTTGTTTCAGATTCCTATCCGTAG
GCGCAAGGGTACATGTTTTTCCCTTTCGTACCACTGCGCTTTTGAAGTGC
TTGCACAGATGGCGACGCATCGTGTTGGTGCTCGTTTTTTTTTTTCTCGG
GCGATACTCCGTCGTATTTTTTGGCATTTGATTGAACGTTCAGGTTGGGC
CCAAGACAAGATATGAACCACTTGCGACAAACAAAACTAAGGAACGCGAC
CGGCAGTCTGATCACGACCCCCCGAAATAGAATCTAACCCGATTTTCGCA
CACGTCAGTCAGTACGTGCGTGCCGGCCTTGTTACGGCCGCGATAGGCAA
CGGGGAACGAGGCCTTTGTACGACAAATTCGTTCGATTTCAAATATCCAC
TTGTGGTCGGGCCGTAATTACTGGCGCGGGGAACATATA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig87:344600..351238-

>mRNA_P-littoralis_Contig87.170.2 ID=mRNA_P-littoralis_Contig87.170.2|Name=mRNA_P-littoralis_Contig87.170.2|organism=Pylaiella littoralis U1_48|type=CDS|length=600bp|location=Sequence derived from alignment at P-littoralis_Contig87:344600..351238- (Pylaiella littoralis U1_48)
ATGAAGGTGTTTTCCATATGCACGTTGCGGTACAACCGCGATACGGCGGA
GCCCGTGATGCTATCGCAGGTAGAGGACCTGTCTTCCTTCGGCTTCTTCC
AGCGTCAGGGAATCAAGGAGATGTGCACCTTCTTCAGCAAGACCATCGTC
AAGCGCACGCAACCCGGACAGCGGCAAACCGTCCAGCATGAGGACTCGTA
CAACATACACGTGTACATGCGGCAAGACGGATTAGCAGGGACAGTGACGG
CGGACCTGGAGTACCCCCCACGAGTGGCGTTCGTGTTGCTCACGCAGTTA
TTGGAGCAGTTCGCGGAACAAGTACCGTGGCAATCTGAGATCCGACACGA
CGCAATTCGGTTTCCTCCTATGGCCAAAATGATTGTGGACTACCAGGACC
CGGCGAAGGCCGACAAGATAACCAAGATTCAGCGCGATTTGGATGAGACG
ACCGAAGTACTGCACAAAACAATCGACAACGTGTTGGAGCGAGGGGTAAG
ACTAGACGAGCTGGTGGACCGATCGGACGACTTGAGCCGACAATCGAAGA
TGTTCTACAAGCAAGCAAGGAAAACTAATAGCTGCTGCGTCGTGAGCTAA
back to top