mRNA_P-littoralis_Contig87.168.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.168.1
Unique NamemRNA_P-littoralis_Contig87.168.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.168.1 vs. uniprot
Match: D7G929_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G929_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.370e-19
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query: 1462 VAAGEESKVVDVMPQHAESVVDEETKRLVEGSKYLQFEDDERSVLCTLTGKKMAPVYDTIILYIGSRKVQRLMVEGPFVMS 1704
            V  GEE  V   +P HA  VVDEET+ LVEGSKYL+FEDDER+VLCTLTGKK+AP Y  I+ Y+GSR+VQ+L+VEGP  MS
Sbjct:  228 VGFGEERTV--AVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILKYMGSRRVQQLVVEGPVSMS 306
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BLAST of mRNA_P-littoralis_Contig87.168.1 vs. uniprot
Match: A0A6H5KG62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG62_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.510e-19
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 1 
Query: 1462 VAAGEESKVVDVMPQHAESVVDEETKRLVEGSKYLQFEDDERSVLCTLTGKKMAPVYDTIILYIGSRKVQRLMVEGPFVMSVS 1710
            V  GEE  V   +P HA  VVDEET+ LVEGSKYL+FEDDER+VLCTLTGKK+AP Y  I+ Y+GSR+VQ+L+VEGP  MS+S
Sbjct:  465 VGLGEERAV--AVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILNYMGSRRVQQLVVEGPVSMSIS 545
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G929_ECTSI1.370e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG62_9PHAE1.510e-1966.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:335513..338014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1727
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002110.1
Cds size1725
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791746.0675871-CDS-P-littoralis_Contig87:335512..3359351680791746.0675871-CDS-P-littoralis_Contig87:335512..335935Pylaiella littoralis U1_48CDSP-littoralis_Contig87 335513..335935 -
1680791746.0789316-CDS-P-littoralis_Contig87:336085..3365981680791746.0789316-CDS-P-littoralis_Contig87:336085..336598Pylaiella littoralis U1_48CDSP-littoralis_Contig87 336086..336598 -
1680791746.093322-CDS-P-littoralis_Contig87:336709..3374651680791746.093322-CDS-P-littoralis_Contig87:336709..337465Pylaiella littoralis U1_48CDSP-littoralis_Contig87 336710..337465 -
1680791746.1105118-CDS-P-littoralis_Contig87:337981..3380141680791746.1105118-CDS-P-littoralis_Contig87:337981..338014Pylaiella littoralis U1_48CDSP-littoralis_Contig87 337982..338014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.168.1prot_P-littoralis_Contig87.168.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 335513..338014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.168.1

>prot_P-littoralis_Contig87.168.1 ID=prot_P-littoralis_Contig87.168.1|Name=mRNA_P-littoralis_Contig87.168.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=575bp
KRGDILRRLKQSGAATQQKENTVPIQPKNSAAVPQLQRPPGKDIKTIGTT
GYSGASQRLLKKALRQISPNSPRAIQCAAHSFRKSKPFVSPATASALEQK
VSPLALPSTQEGGASIESSTATAPESDPTSEVLALAGAVSTSDKDTKVAE
SSAVGSELNAKDVAPGKGAFETVAPTAETTEVRRRTSMMVATVNPRLQEV
SVLPRGTVVRVKLFAEDNEEKETIEGQQHVQNAAETTDVEDETAAATPAL
SAAKEYIEQQQQGQQQQEGADDVVEGDNRGTVEPEQQQEKNVADVPALSR
VMEDIKQQQQKGIEGAMEEDGSGASESQQQLEENVADPPAISIDLDQRQE
EDTDDATEEGRPTAVESQQQAEQPASMKSQHEKSEAEASATAAKEEDTVE
ASRVAMSTGSARTEEQQVATPAPSLLSNEEQDKDEHQEDECMGNTLMSSS
YREEDIDDEDDNVLVTIPKKDDYDVGVTCVSQPEEVVVAAGEESKVVDVM
PQHAESVVDEETKRLVEGSKYLQFEDDERSVLCTLTGKKMAPVYDTIILY
IGSRKVQRLMVEGPFVMSVSIHFC*
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mRNA from alignment at P-littoralis_Contig87:335513..338014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.168.1 ID=mRNA_P-littoralis_Contig87.168.1|Name=mRNA_P-littoralis_Contig87.168.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2502bp|location=Sequence derived from alignment at P-littoralis_Contig87:335513..338014- (Pylaiella littoralis U1_48)
AAAAGAGGCGACATTTTGCGGAGACTCAAGCAGGTGAGCGCGTACGGCGT
ACATGTACAAGCACCAAGGCAATCTCAGAAGCGACGCCGTGCTCAACTAC
CTGTGATGCGCCGGCGAGAGAATAAACCGACTATGTATGGCTAGGTGGGG
CATAATGCTTGAGGATAGGGACGGAAGATAGATGCACATCTGGCTGTTGG
TGTGCAAGCGTCCAAATCTAGCGCATACGTTGCGGCAACACAAACATGCA
CATGCAACAGCAGTGCTCCTCACTTTGTGAAACGTGAAACAGCATTCGCA
CACCACGACGACCCTACCTCGTTCTTCTTCTAGTGTTGTTGCCTAGTTTT
CACCTCTTCTACAGTATGTCTATTTTTCGTTTAGGTTCAAGCACCGAAAT
ATACCTGGTAGCTTTTTGTACGTAATTACTTTCTTTCATGATTTGCCGAA
TGAGGCGAAGGGTGGGCCTGTGTGCTTTGATCCGTTTGCACACCAGGACT
GACACCTTTGACACGCTGCCACGGTCGACTGATTCCTTATGTTTGGCAGA
GCGGAGCCGCTACCCAGCAGAAGGAGAATACCGTGCCTATCCAGCCGAAA
AACTCTGCGGCAGTACCGCAGCTGCAACGACCTCCCGGCAAGGATATCAA
GACGATTGGAACCACGGGTTATTCAGGGGCATCACAGCGCCTGCTGAAGA
AGGCCCTCAGACAAATATCTCCCAACTCCCCCAGGGCGATCCAGTGCGCG
GCGCATTCGTTCCGAAAGAGCAAGCCCTTTGTCAGCCCTGCCACCGCGTC
GGCCCTCGAGCAGAAGGTATCGCCGTTAGCATTGCCATCTACTCAGGAGG
GCGGTGCCTCGATCGAATCGTCGACGGCAACGGCACCGGAGAGCGACCCC
ACAAGCGAAGTCCTTGCTTTGGCTGGGGCTGTGTCAACCTCTGACAAAGA
CACCAAGGTAGCAGAATCATCGGCGGTGGGTTCCGAATTGAACGCTAAGG
ATGTTGCCCCTGGGAAGGGTGCTTTTGAAACTGTAGCACCAACGGCAGAA
ACGACAGAAGTGCGGAGGAGGACGAGCATGATGGTTGCAACGGTCAACCC
TCGACTCCAAGAGGTGTCCGTCCTACCACGCGGCACCGTCGTGCGCGTCA
AGCTGTTTGCAGAGGACAACGAAGAAAAAGAAACAATTGAAGGACAACAG
CATGTACAGAACGCGGCTGAGACGACAGATGTGGAGGACGAAACCGCTGC
TGCCACTCCTGCTTTATCGGCCGCAAAGGAATACATCGAGCAGCAGCAGC
AGGGTGTCAACGATTTACTGAAAGAGGGTGGGCCTGGGCCCGTTGAGCCC
CAGCAACAGAAAGAAGAAACCGCTTCTAACCCTCCTGCTAAATCAGTGGT
CGCGGAAAACATCAAGCAGCAGCAGCAGGAGGGTGCCGACGATGTAGTGG
AGGGGGATAACCGTGGGACCGTTGAGCCTGAGCAGCAGCAGGAGAAAAAC
GTTGCTGATGTTCCTGCTCTATCGAGGGTCATGGAAGATATCAAGCAGCA
GCAGCAGAAGGGTATTGAGGGGGCGATGGAGGAGGACGGGTCTGGAGCTT
CTGAGTCCCAGCAGCAGCTAGAAGAAAACGTTGCTGACCCTCCTGCTATA
TCGATAGATCTTGATCAGCGGCAGGAGGAGGATACTGACGATGCAACGGA
GGAGGGTCGGCCTACGGCCGTTGAATCCCAGCAGCAAGCAGAGCAGCCGG
CCTCCATGAAAAGCCAACATGAAAAATCCGAAGCCGAAGCCTCGGCAACT
GCTGCTAAGGAGGAGGACACCGTCGAAGCTAGCCGAGTCGCGATGTCCAC
AGGATCTGCACGCACCGAGGAGCAGCAAGTTGCAACGCCCGCGCCTTCTC
TGCTCTCTAACGAAGAGCAGGACAAGGATGTGCTGCAGGACGAAATTATG
GCTGGTCTGCTGATCGAGAAAATGAAAGATGAGCAGCAGCAGGAGAAATT
GGCTTCTTCCGTGTTGTGTGGGGGTGAACACGTGAGTATGGCCAAGGAAA
CTGCTACTGCTGCAGTTGATGACACGGAGGAGCACCAAGAAGACGAATGT
ATGGGTAATACTCTCATGTCGTCTTCCTACAGAGAGGAGGACATTGATGA
TGAGGACGATAACGTTCTTGTTACAATCCCGAAAAAAGATGACTATGATG
TCGGTGTCACTTGCGTATCGCAGCCAGAGGAGGTAGTCGTGGCGGCAGGC
GAAGAGTCCAAAGTGGTCGACGTAATGCCGCAGCATGCCGAGTCTGTGGT
GGACGAGGAAACCAAGCGCCTCGTGGAGGGCAGCAAGTACCTCCAGTTCG
AGGACGATGAGAGGAGCGTGCTGTGCACCCTCACGGGCAAGAAGATGGCC
CCGGTCTACGACACCATTATTTTGTACATCGGTAGTAGAAAGGTGCAGCG
GCTCATGGTGGAAGGACCCTTCGTCATGTCGGTGAGCATACATTTTTGCT
GA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:335513..338014-

>mRNA_P-littoralis_Contig87.168.1 ID=mRNA_P-littoralis_Contig87.168.1|Name=mRNA_P-littoralis_Contig87.168.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1725bp|location=Sequence derived from alignment at P-littoralis_Contig87:335513..338014- (Pylaiella littoralis U1_48)
AAAAGAGGCGACATTTTGCGGAGACTCAAGCAGAGCGGAGCCGCTACCCA
GCAGAAGGAGAATACCGTGCCTATCCAGCCGAAAAACTCTGCGGCAGTAC
CGCAGCTGCAACGACCTCCCGGCAAGGATATCAAGACGATTGGAACCACG
GGTTATTCAGGGGCATCACAGCGCCTGCTGAAGAAGGCCCTCAGACAAAT
ATCTCCCAACTCCCCCAGGGCGATCCAGTGCGCGGCGCATTCGTTCCGAA
AGAGCAAGCCCTTTGTCAGCCCTGCCACCGCGTCGGCCCTCGAGCAGAAG
GTATCGCCGTTAGCATTGCCATCTACTCAGGAGGGCGGTGCCTCGATCGA
ATCGTCGACGGCAACGGCACCGGAGAGCGACCCCACAAGCGAAGTCCTTG
CTTTGGCTGGGGCTGTGTCAACCTCTGACAAAGACACCAAGGTAGCAGAA
TCATCGGCGGTGGGTTCCGAATTGAACGCTAAGGATGTTGCCCCTGGGAA
GGGTGCTTTTGAAACTGTAGCACCAACGGCAGAAACGACAGAAGTGCGGA
GGAGGACGAGCATGATGGTTGCAACGGTCAACCCTCGACTCCAAGAGGTG
TCCGTCCTACCACGCGGCACCGTCGTGCGCGTCAAGCTGTTTGCAGAGGA
CAACGAAGAAAAAGAAACAATTGAAGGACAACAGCATGTACAGAACGCGG
CTGAGACGACAGATGTGGAGGACGAAACCGCTGCTGCCACTCCTGCTTTA
TCGGCCGCAAAGGAATACATCGAGCAGCAGCAGCAGGGTCAGCAGCAGCA
GGAGGGTGCCGACGATGTAGTGGAGGGGGATAACCGTGGGACCGTTGAGC
CTGAGCAGCAGCAGGAGAAAAACGTTGCTGATGTTCCTGCTCTATCGAGG
GTCATGGAAGATATCAAGCAGCAGCAGCAGAAGGGTATTGAGGGGGCGAT
GGAGGAGGACGGGTCTGGAGCTTCTGAGTCCCAGCAGCAGCTAGAAGAAA
ACGTTGCTGACCCTCCTGCTATATCGATAGATCTTGATCAGCGGCAGGAG
GAGGATACTGACGATGCAACGGAGGAGGGTCGGCCTACGGCCGTTGAATC
CCAGCAGCAAGCAGAGCAGCCGGCCTCCATGAAAAGCCAACATGAAAAAT
CCGAAGCCGAAGCCTCGGCAACTGCTGCTAAGGAGGAGGACACCGTCGAA
GCTAGCCGAGTCGCGATGTCCACAGGATCTGCACGCACCGAGGAGCAGCA
AGTTGCAACGCCCGCGCCTTCTCTGCTCTCTAACGAAGAGCAGGACAAGG
ATGAGCACCAAGAAGACGAATGTATGGGTAATACTCTCATGTCGTCTTCC
TACAGAGAGGAGGACATTGATGATGAGGACGATAACGTTCTTGTTACAAT
CCCGAAAAAAGATGACTATGATGTCGGTGTCACTTGCGTATCGCAGCCAG
AGGAGGTAGTCGTGGCGGCAGGCGAAGAGTCCAAAGTGGTCGACGTAATG
CCGCAGCATGCCGAGTCTGTGGTGGACGAGGAAACCAAGCGCCTCGTGGA
GGGCAGCAAGTACCTCCAGTTCGAGGACGATGAGAGGAGCGTGCTGTGCA
CCCTCACGGGCAAGAAGATGGCCCCGGTCTACGACACCATTATTTTGTAC
ATCGGTAGTAGAAAGGTGCAGCGGCTCATGGTGGAAGGACCCTTCGTCAT
GTCGGTGAGCATACATTTTTGCTGA
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