mRNA_P-littoralis_Contig1201.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1201.3.1
Unique NamemRNA_P-littoralis_Contig1201.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1201.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1201contigP-littoralis_Contig1201:32136..37867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.0535185-CDS-P-littoralis_Contig1201:32135..322341680789516.0535185-CDS-P-littoralis_Contig1201:32135..32234Pylaiella littoralis U1_48CDSP-littoralis_Contig1201 32136..32234 -
1680789516.067455-CDS-P-littoralis_Contig1201:37783..378671680789516.067455-CDS-P-littoralis_Contig1201:37783..37867Pylaiella littoralis U1_48CDSP-littoralis_Contig1201 37784..37867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1201.3.1prot_P-littoralis_Contig1201.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1201 32136..37867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1201.3.1

>prot_P-littoralis_Contig1201.3.1 ID=prot_P-littoralis_Contig1201.3.1|Name=mRNA_P-littoralis_Contig1201.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
LVTQVQPLGGGLPSFYQASAQASDIDRGVDSDLWFRRLDRRQAQVQSMLP
PAPDLPLVEL*
back to top

mRNA from alignment at P-littoralis_Contig1201:32136..37867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1201.3.1 ID=mRNA_P-littoralis_Contig1201.3.1|Name=mRNA_P-littoralis_Contig1201.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5732bp|location=Sequence derived from alignment at P-littoralis_Contig1201:32136..37867- (Pylaiella littoralis U1_48)
TTGGTGACCCAAGTGCAGCCTCTGGGCGGCGGCCTGCCCTCCTTTTACCA
GGCGTCAGCGCAGGCGTCGGATATCGACCGTGGGGTGAGCGGCGAAATGG
TGTTGTTTGCGAGATTGTTTACTGCTGTCTTCTTCTTTGTTTCAGGATTG
ATTGCTTCGTTGTTCTCACGATTGATTACTGCTGGCACAAACAAAATCCT
CTTGTGCTTTCTCTTTATTCATGCGTTCAGGGAAAGTTCAACTTGACCCT
TGTCCGCGATTGCGATCTACAGATATACTCCGGAGTATGCTTTAAGCGAT
TTGCGATCTACAGATGCATCATATCCTGCGAATTTGCGATCTACAGATGC
ATATGCTGTTGCGCTTTTGTTTCGCATACCTCTGATGGATACCTACGTAT
ACAGCTGAACCGCCACAACTGCAGCTGCCCGGTATAGTCTATACTCTATA
CTGCTGTATATAGCTGAACTATCTGTCTATATACTGCTGTAGACTATATA
TCTATCTGCGGTGTATACCTGAACTATCTATACTGCTGTATATAGCTGCG
GTAATATAGCTGAACTGGAGGTATAGCTGCGCTGCTGCATCGTGTCATAT
ACTTCGGTATCATCTACTTATAAGCTCTATACTGCTGTATATAGCTGCTG
TATATAGCTGAACTGCAGGTATAGCTGCACTGCCGCGTCATCTACCTTTA
TACCTATACGGCTGTATATCGTTGAATTGATGAACTGCAGGTAAGCGGCA
GTGCTGGGTCATCTACCTATATATCTACTCCGTATACTGCTCTCCGTATA
CTGCCGTGTATAGCTGAAATGCAGGTTCAGCTGCAGCTAGTTTAGACAGC
TGCATGCGGTGCCATCTATTCATATACCCACGGCGGCAGGCCTATGCGGC
GATATATATCTGCACTGCAAGGTCTATTCTGTTGTATTTTCTTCTGTATA
TAGCTGAACTGCAGGTTTGGCTGCACTACAGATCGGTTGTATAACACTGA
ACATCTGTTGTATAACGCTGAACTGCAGGTTTAGCCCTGCAGATCTGTTG
TATGTAGCTGCACCGTAAGCTTAGACAGCGGCAGGCCGGGTCACTTACGG
ATATACCCACGGCAACAAGCCCATGCTGCTATATGATGCTTATATATAGC
TGCACGGAAAGGTCAAACTGCGGTATAGTCAATAGCTGTTTCTGCGGTAT
ATAATAATAATGCGGTTCCACGGCTGTGGCATCTACCTATATATATCTAG
GCTATATATCTATAGGTCCTCTACCTATATATCTATACTGCTGCATATGC
TGAACTGCCGGTATAGCCACATATATACACGGCCGCAAGCCTATGCTGCT
ATTTATAGTTCACTGCAGGTCTCTATTGCTTTACTAGCTGTACTGCCGTA
TATAATGGGGGTGTTTTTACCCACTTGCCGCAGCTTTTCGTATGGGATGC
CTTTCCCTTATTTCCCACTGGCCGCAGTCATCGTATGCAATACGTTTCTC
TTTTGCCGCAGCCACTGTATGAGATGTCCTTTCCCGCGTTAGCCGCCGCT
ACCCCACCTTAGCCGCAGCTATCGAAAATTCATTTCGCCGCAGCCACCAT
CCTACGAGTTGTGTCTTCCACTTTAGCCGCCGCGGCCGTATCGTATTGTC
ATTTCGCCGCAGCCACCAAATGAGGTGTAATTCCCCCCCCCCAGCAGCCA
TCGTCTAATGGTTTCCTACCAGATTTTGTTTCGCCATTTGCCGCAGCCAT
CATCTGAGATGTGTTTCCTGGCGTTTCTTCTCGCCGCAACCATCATGTGA
GGTGTGCTTCCTTGCTTTTCGCCGCAGCCATCATATGAGATGTGTTTTCC
CCTTGCGCCGCAGTCATCGTATGAGATGACTTTCCGCCTTACTTTCGCCG
CAGCCATCGTATTGATGTGTTTTCCGTTTTCGCCGCAGCCATCGTATGAG
ATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGTTTTATACT
TTCGCCGCAGCCGTCGTATGACATGTGCTTTACATTTTCGCCGCAGCCAT
CGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGC
TTTACATTTTCGCCCCAGCCATCGTATGAGATGTGCTTTTCTGCTTTTGC
CGCAGCCATCGTATGGGATGTGCTTTACATTTTCGCCGCAGCCATCGCAT
GCGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTAC
ATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGC
CATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCGTCGTATGACATG
TGCTTTACGTTTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTT
CGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCG
TATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTT
TACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGC
AGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAG
ATGTGCTTTTCTGCTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACAT
TTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCA
TCGTATGAGATGTGCTTTTCTGCTTTCGCCGCAGCCGTCGTATGAGATGT
GCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGTTTTACATTTTCG
TATGAGGTGTGCTTTACACTTTCGCCGTATGCGATGTGCTTTGCATTTTC
GCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCCGCCTCGTA
TGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGCGATGTGCTTTT
CTGCTTTCGCCGCAGCCGTCGTATGAGATGTGCTTTACATTTTCGCCGCA
GCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCGTCATATGAGA
GGTTTTCTTTTCGCCGCAGCCATCATATGAGATGTGCTTTTCTGCTTTCA
CCGCAGCCATCCTATGAGGTGTATCATCGTTTCACGGCCGCATGATTTCG
CCGTCTGCTATCAGTTTCTCTCGCTGCAGCCATCATCTGCGATGTGCTCT
TCCACCGCCATTCGTTGATACGTGTTTCCTTGGGCCGCAGCTATCGAGGG
GTCAGCATTCCACGGTCGCAGGATTTCGCCGTCCGTTGTCAATACCAATT
TGGACCACTTCCCTCTCTCGCGCAGCCATGGAGGGGCCCGCGTTCCACCG
TCGCATGGTTTCGCCGTCTGTTGTCAATACCAATTTGGACCATTTCCCTC
TCTCGCTGGTTGCCGGTGTTTGTTTCCGCCGCGCGCTGCAGATGAGTCCG
CTCGTCACCACGGCGCTCACCGTCCTTCGGAACGTCCAACACAGAAGATT
GGTTTACTTTCTCCCAACACCTGAACGCCCTCGTCAGGAAATCCTTACAC
TTGGCCTCCTCAACGATCGTGAACTCCTGGACCAACTCCAGTTTCGTGGA
AACGATATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTT
CTCCTAGATGCTTCCGACCAAACGTCATGTCTCGCGGGAGACCACCTTTC
GGGACCGCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACC
GCAGTGTCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGC
TCACCACGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGA
GTAGGGGCTCGAGCGTTCGCGGTGGGGGAGGCCGCTACTCTTCTGCAGGG
ACTTCGGTCCCTCTGCCGTTTACTCCGTCTGTTTTGCCGCCTACCGCCAC
GGCCCGACGCCCTGCCCATCAAAGAGGCTCTGCACGCGGTAACGGGCGGG
GTGCATCCGCTCCACCCCCGCCCCCTTCCAACGCTGCCGCCGCCGACCGG
AAAAGGTACACAGACAGACCCCGGGAGAACCAGCAGGCCATGACTTCTTC
GCCCAACGCCGACCGCTGCCACAACTGCGCCGATAAGGGCCGCGTAGACC
TCCACCACCACAAAGCGTGTGCTTTCTCCCTGTGCCGCCGCTGCAAACGC
GGAGGGCACCGCGCGGTGGACTGCACCTTTCCCCTTACCGCGGTTGACCT
GGTTGATATAGGATCTTTGGACGGCCATTCCGGGTGCTGACACTTGCCCG
AGCTGAGCGCGTCGTTTGAGAGGGGGTACTGTGTTTGCGGAGCTCGTTTT
CGTGGGGGTGTAGTGTACTGTGTTTTTCCCTCATGCGTTTTCCTCCTGCG
CGTCTCTAGCATAACGAACGGTGTGTTGGGGTTTTCCTACCCTAGGAAAC
GGCGTGCCCGTCGATGGGCTGTATTGTTTCTGGCCGTAGCCGTCCAAACG
ATTTGCGCTTCCGTTCGCCGCAACCGACGGGGGTGAGTTTCTCATTTCGC
CTCGCAATCAGCTGAGATTGCTTGCGGCAGCCGTCCAACCATTGGCGTTT
TACTTTTGCCGAAAATAAAATAAATAAAATATGCGTTTTTCCCTTCGCGG
AAAACCGCCGAATGTGGTTCGTTTCTTTTGGGTACAGCGCTCACCCGAGA
GGTGCGTTACTTCTTCCGGCTGGTGGGGTTTTCTTTCGCCGCATCCTGCA
AGAATCCTTGCCTTTGTTTCCTTTCGCTGTCGCCATAAATGAGCTATCTA
TCACGACCGCCGTTAATGCCATGTGATTCTATGGTCTTGTGCTGCAGCCC
GCTATGGGGCGTGCTCGTTTTCCTTGATGGTTCTATGGTTCTTGTGCCGC
AGCCAGCTACGGGATGGACTGGTTCTCTTTTCACTGCAGCCGTTTTCCAT
GTACTTTCATGTACTTTATTTGTGCTCGTTCTTCCTTGATGTTTCGATGG
TTCTTGGGCTGCAGCCAGCGGTGGGATGGACTTGTTCTCCTTTCGCTGCA
GCCGTTTTTCTCCATGTATTTCGTGTTCTTGAGCCGCAGCCACCTAAAAT
GGCGTTGCGTTACGGTCATCGCCGCTGGGTGGGCGTACACATGCAAGTTT
AAACCCAGAATGCATGAAAACTGCTTGAGCAGGAATCTTTCTTCAGGTTC
GATTGCCTGATCGACCGGCAATGCGCCGTTCTTGGGAGTTTACGTCATCA
CGCCGTGGCAATCCCCTACCTTATGCTCGTCTCCGCTCATCGACAACTTG
GTGGGCTCCACATCTCCTATGCCTGCGCCTTCGCCGTTAGACATCGCACA
CACACACAACCACCCGCGTCACTTCATCTTTCCAACGATGCGGGTCCCAC
CGACACAGCATCCGATACATGCATATGCAACACAGTATGCCGGTACATGC
ATATTATGCACCACGTACACCACGCGTCCCGAACGTGGTCCCGTGTCTGC
TTGTTTAGAACACACCCATAAGCACGCCTGCAAGCGTTCAGGCGCTGTGC
TCGCGTTCCTCCATGCTACCTATTTCTTTCCGTCGTTGGTTTGCCGGTAG
GTAACAAACCTCGGGCACGTCACCCACCTTTAGGTGGATTCTGATCTCTG
GTTTCGGCGGCTGGACCGTCGCCAAGCCCAAGTCCAATCGATGCTGCCTC
CTGCACCAGACTTGCCATTGGTTGAACTCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1201:32136..37867-

>mRNA_P-littoralis_Contig1201.3.1 ID=mRNA_P-littoralis_Contig1201.3.1|Name=mRNA_P-littoralis_Contig1201.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1201:32136..37867- (Pylaiella littoralis U1_48)
TTGGTGACCCAAGTGCAGCCTCTGGGCGGCGGCCTGCCCTCCTTTTACCA
GGCGTCAGCGCAGGCGTCGGATATCGACCGTGGGGTGGATTCTGATCTCT
GGTTTCGGCGGCTGGACCGTCGCCAAGCCCAAGTCCAATCGATGCTGCCT
CCTGCACCAGACTTGCCATTGGTTGAACTCTGA
back to top