mRNA_P-littoralis_Contig87.114.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.114.1
Unique NamemRNA_P-littoralis_Contig87.114.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A6H5JFB7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB7_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.160e-75
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    4 HTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFAT-RFLIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSAL 354
            HTRANG RCRNRVCFGSPVCWLHNCIKYGV+IKDSTIP AGKGLFAT R   DSWICPYSGEPTTMNCIHQRYPGAMTAAYTE+IPGPANL FDCACSRGVGSLANARFNADGKVSAL
Sbjct:   29 HTRANGTRCRNRVCFGSPVCWLHNCIKYGVEIKDSTIPGAGKGLFATTRLPKDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEKIPGPANLAFDCACSRGVGSLANARFNADGKVSAL 146          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: Q8QNC4_ESV1K (EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K)

HSP 1 Score: 194 bits (493), Expect = 8.710e-61
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 1
Query:    4 HTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATRFLI-DSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSALR 357
            HTR +G+RC+NRVCFGSPVCW+HN  KYGVKIKDSTIP AGKGLFATR +  DSWICPYSGE TTMNCIHQRYP   TAAYTEQ+   ANL +DCACSRG+GSLANA+FN++G VSALR
Sbjct:   29 HTRDDGLRCKNRVCFGSPVCWVHNARKYGVKIKDSTIPGAGKGLFATRKIPRDSWICPYSGEATTMNCIHQRYPEGETAAYTEQVQ--ANLAYDCACSRGIGSLANAQFNSNGTVSALR 145          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: B5LWM5_9PHYC (Putative lysine methyltransferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM5_9PHYC)

HSP 1 Score: 176 bits (447), Expect = 8.700e-54
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    7 TRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATRFLI-DSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSALR 357
            TR NG+RC+NRVCFG P+CW+HN  K+GVKIK STIP AGKGLFATR +  ++WICPYSGE TTM CIHQRYPG  TA Y E+I    N+ +DCACSRG+GSLAN RFNA+GKVS++R
Sbjct:   31 TRPNGLRCKNRVCFGFPLCWIHNSQKFGVKIKQSTIPGAGKGLFATRQIPKNTWICPYSGEETTMECIHQRYPGDSTAPYAEKISD--NIAYDCACSRGIGSLANGRFNANGKVSSVR 146          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A6H5JAG7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 7.370e-48
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   10 RANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATR-FLIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSAL 354
            RANG+RC+NRVCFG+P+C +HN +KYGVK K STI  AGKGLFATR F  +SWICPY GE T+ +CI +RYPG MTAAY E +PGP  L  D AC RGV SLAN  FNA+G VS+L
Sbjct:   31 RANGMRCKNRVCFGTPLCHVHNSLKYGVKAKTSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEILPGPEQLHIDSACKRGVASLANGLFNANGSVSSL 146          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: Q6XLV1_9PHYC (FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV1_9PHYC)

HSP 1 Score: 132 bits (332), Expect = 4.070e-36
Identity = 67/123 (54.47%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 AHTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATR-FLIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIP---GPANLGFDCACSRGVGSLANARFNADGKVSALR 357
            A+ R NG +C+ RVC G P CW+H    +GV +K STIP AGKGLFATR F  ++WICPY GE    NC  QRYPG  TA Y E +P    P     D AC+R VGSLAN +F  DG VS+LR
Sbjct:   40 AYVRPNGEQCKKRVCVGHPFCWIHVRAAFGVTVKTSTIPNAGKGLFATRDFKKNTWICPYFGEIIDANCFVQRYPGKATAPYAEMLPLNTTPRKY-VDSACTRSVGSLANGKFKGDGSVSSLR 161          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A6H5J8Q0_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.920e-26
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  106 STIPEAGKGLFATR-FLIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSAL 354
            + +  AGKGLFATR F  +SWICPY GE T+ +CI +RYPG MTAAY E +PGP  L  D AC RGV SL+N  FNA+G VS+L
Sbjct:   24 TVLVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEMLPGPEQLHIDSACKRGVASLSNGLFNANGSVSSL 107          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A7C3YXR9_9BACT (SET domain-containing protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7C3YXR9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 5.650e-11
Identity = 43/115 (37.39%), Postives = 54/115 (46.96%), Query Frame = 1
Query:    1 AHTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATR---------FLIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRGVGSLAN 318
            A +  +G RC+ +   G   C +H      +KIKDS IP +GKGLF            F  D  IC Y GE T  N I Q+      A Y  ++    N   DCAC RG+GSL N
Sbjct:   26 ATSNTSGNRCKRKCIIGFEYCPIHLLYLKHLKIKDSLIPNSGKGLFVCNKSVGPNDIVFRKDDVICDYKGE-TINNAIRQQRYNGKNAPYAIELSN--NNIIDCACKRGIGSLIN 137          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A6H5J8I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.650e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  229 MTAAYTEQIPGPANLGFDCACSRGVGSLANARFNADGKVSAL 354
            MTA+Y E +PGP  L  D AC+RGV SL+N  FNA+G VS+L
Sbjct:    1 MTASYAEMLPGPEQLHIDSACNRGVASLSNGLFNANGSVSSL 42          
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Match: A0A7C1JRQ2_9BACT (SET domain-containing protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7C1JRQ2_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 3.870e-5
Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 1
Query:    1 AHTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATRFLIDS-WICPYSGEPTTMNCIHQRY 219
            A    NG RCR       P C  H  + +GV+++ STIP AG GLFA R+L    ++  Y G+  ++   + RY
Sbjct:   25 AFIHPNGERCRRLTTITHPYCAQHTRVVHGVEVRPSTIPGAGLGLFAVRYLPKGVFLFNYDGDRLSVADYNARY 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JFB7_9PHAE1.160e-7592.37SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q8QNC4_ESV1K8.710e-6177.31EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K[more]
B5LWM5_9PHYC8.700e-5469.49Putative lysine methyltransferase n=1 Tax=Feldmann... [more]
A0A6H5JAG7_9PHAE7.370e-4866.38SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XLV1_9PHYC4.070e-3654.47FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5J8Q0_9PHAE2.920e-2660.71SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7C3YXR9_9BACT5.650e-1137.39SET domain-containing protein n=1 Tax=Elusimicrobi... [more]
A0A6H5J8I0_9PHAE3.650e-759.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C1JRQ2_9BACT3.870e-536.49SET domain-containing protein n=1 Tax=Chlorobi bac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:197530..197913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog269798.CHU_1535
PFAMsSET
Model size384
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000959
EggNOG OGsCOG2940@1|root,COG2940@2|Bacteria,4PB6A@976|Bacteroidetes,47VAS@768503|Cytophagia
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.5651271-CDS-P-littoralis_Contig87:197529..1979131680791744.5651271-CDS-P-littoralis_Contig87:197529..197913Pylaiella littoralis U1_48CDSP-littoralis_Contig87 197530..197913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.114.1prot_P-littoralis_Contig87.114.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 197530..197913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.114.1

>prot_P-littoralis_Contig87.114.1 ID=prot_P-littoralis_Contig87.114.1|Name=mRNA_P-littoralis_Contig87.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
AHTRANGIRCRNRVCFGSPVCWLHNCIKYGVKIKDSTIPEAGKGLFATRF
LIDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEQIPGPANLGFDCACSRG
VGSLANARFNADGKVSALRLVITVKEC*
back to top

mRNA from alignment at P-littoralis_Contig87:197530..197913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.114.1 ID=mRNA_P-littoralis_Contig87.114.1|Name=mRNA_P-littoralis_Contig87.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig87:197530..197913+ (Pylaiella littoralis U1_48)
GCACACACGAGAGCAAACGGGATCCGGTGCAGGAACAGAGTATGTTTTGG TTCACCGGTGTGCTGGTTGCACAACTGCATTAAATACGGGGTGAAAATCA AAGACTCGACGATTCCTGAAGCAGGCAAAGGATTGTTTGCAACAAGGTTC CTTATAGACTCTTGGATTTGTCCTTATTCCGGTGAACCAACGACGATGAA CTGCATACATCAACGTTATCCGGGGGCTATGACAGCAGCGTACACCGAAC AGATACCTGGTCCGGCAAACCTTGGCTTTGATTGTGCATGCTCAAGAGGA GTTGGTTCCTTAGCGAACGCTCGATTCAACGCCGATGGCAAAGTGTCTGC TTTAAGGCTGGTTATTACGGTCAAAGAATGTTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig87:197530..197913+

>mRNA_P-littoralis_Contig87.114.1 ID=mRNA_P-littoralis_Contig87.114.1|Name=mRNA_P-littoralis_Contig87.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig87:197530..197913+ (Pylaiella littoralis U1_48)
GCACACACGAGAGCAAACGGGATCCGGTGCAGGAACAGAGTATGTTTTGG
TTCACCGGTGTGCTGGTTGCACAACTGCATTAAATACGGGGTGAAAATCA
AAGACTCGACGATTCCTGAAGCAGGCAAAGGATTGTTTGCAACAAGGTTC
CTTATAGACTCTTGGATTTGTCCTTATTCCGGTGAACCAACGACGATGAA
CTGCATACATCAACGTTATCCGGGGGCTATGACAGCAGCGTACACCGAAC
AGATACCTGGTCCGGCAAACCTTGGCTTTGATTGTGCATGCTCAAGAGGA
GTTGGTTCCTTAGCGAACGCTCGATTCAACGCCGATGGCAAAGTGTCTGC
TTTAAGGCTGGTTATTACGGTCAAAGAATGTTGA
back to top