mRNA_P-littoralis_Contig87.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.64.1
Unique NamemRNA_P-littoralis_Contig87.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.64.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.600e-8
Identity = 61/237 (25.74%), Postives = 94/237 (39.66%), Query Frame = 1 
Query:  274 RSSTVVLHKADPFERDSELLARGSLDLQQAAKLVVLNLGADPSLLSHTSDATRRRKLLSDAMYESMHPAGTVFAPIPQPWHHNLGIVHDAMESTGLRVEDHPLLVHYVSTRGGRPSSANILHQRPTAVMVLIAHCDAGGSQPFTCNDKVTSEHPFGAPAGTVAIPKSSMIRVPAPGRNQAV--------PTTAL-------SYAVNRFTSVGDTVCCLPIETSLEMSGVALRTGRKI 939
            R     +   D F  D +   R     + +A LV +NLGADPSLL  T +AT R      A+   +HP GTV   +    + +   +   +++  L +E +P++  Y+  + GR       H       VL+AH           ND     HP G          S+  + P     +AV        P+TA         + +NRFT  GD V     E +  ++ + L  GR +
Sbjct:   43 RKEVTTVQSVDIFSSDFDSTTRPLEVDRDSAMLVFVNLGADPSLLDGTDEATERLHAGLVALESVLHPRGTVVIAMGSIANFDFPCMEARLKAADLAMEKNPVVSIYLEGQPGRIPERLKNHLTTQGCSVLVAH---------KTNDFACHGHPLGKRRAARGAASSASFKSPRQASFEAVGFVVSDKHPSTATFLSTSTADHLINRFTVPGDCVLVTTFEEN-PLASLVLGQGRHL 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD6_ECTSI3.600e-825.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:121896..123343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size945
Hectar predicted targeting categoryother localisation
Exons4
Cds size921
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.9750006-CDS-P-littoralis_Contig87:121895..1219921680791743.9750006-CDS-P-littoralis_Contig87:121895..121992Pylaiella littoralis U1_48CDSP-littoralis_Contig87 121896..121992 -
1680791743.9903135-CDS-P-littoralis_Contig87:122162..1224721680791743.9903135-CDS-P-littoralis_Contig87:122162..122472Pylaiella littoralis U1_48CDSP-littoralis_Contig87 122163..122472 -
1680791744.0033178-CDS-P-littoralis_Contig87:122627..1228901680791744.0033178-CDS-P-littoralis_Contig87:122627..122890Pylaiella littoralis U1_48CDSP-littoralis_Contig87 122628..122890 -
1680791744.0164816-CDS-P-littoralis_Contig87:123068..1233191680791744.0164816-CDS-P-littoralis_Contig87:123068..123319Pylaiella littoralis U1_48CDSP-littoralis_Contig87 123069..123319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.0272517-UTR-P-littoralis_Contig87:123319..1233431680791744.0272517-UTR-P-littoralis_Contig87:123319..123343Pylaiella littoralis U1_48UTRP-littoralis_Contig87 123320..123343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.64.1prot_P-littoralis_Contig87.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 121896..123319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.64.1

>prot_P-littoralis_Contig87.64.1 ID=prot_P-littoralis_Contig87.64.1|Name=mRNA_P-littoralis_Contig87.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=307bp
MTHTGGGCGASESFDQRDDFAHSLGDKARICVKCKPALEQQGRASNQKER
AADGVVTSRSRRKESARVLKPISPTACDILQERRSSTVVLHKADPFERDS
ELLARGSLDLQQAAKLVVLNLGADPSLLSHTSDATRRRKLLSDAMYESMH
PAGTVFAPIPQPWHHNLGIVHDAMESTGLRVEDHPLLVHYVSTRGGRPSS
ANILHQRPTAVMVLIAHCDAGGSQPFTCNDKVTSEHPFGAPAGTVAIPKS
SMIRVPAPGRNQAVPTTALSYAVNRFTSVGDTVCCLPIETSLEMSGVALR
TGRKIEV
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mRNA from alignment at P-littoralis_Contig87:121896..123343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.64.1 ID=mRNA_P-littoralis_Contig87.64.1|Name=mRNA_P-littoralis_Contig87.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1448bp|location=Sequence derived from alignment at P-littoralis_Contig87:121896..123343- (Pylaiella littoralis U1_48)
AGCTACCGTTGCGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGG
TGCATCGGAGAGCTTTGACCAACGCGACGACTTTGCCCACAGCCTTGGTG
ATAAAGCGAGAATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGA
CGAGCTTCCAACCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAG
GAGTAGACGAAAGGAATCTGCGCGTGTATTGAAGCCCATCAGCCCTACTG
CCTGCGATATCTTGCAAGAGAGGAGGTGAAGCACCAGTACGCCTTCCTTT
TGCCTGTTTTGTCGGTTAGCGTCGATGTATACCGTAATTACGTGGTGCGT
GGTTGTTTATCACATAGTTCACTATTCTTTTACGTTTCTTCCTTGTAATC
CGAGCCGCCTATTTACCTTCTTTACCCCAAACACATTCAACTATCTTCAA
CAGATCGTCGACCGTCGTACTTCACAAGGCCGACCCCTTTGAGAGAGACT
CGGAGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAGCGGCTAAACTT
GTCGTGCTGAACCTAGGGGCCGACCCTTCGCTTCTCTCACACACTTCCGA
TGCTACTCGACGCCGTAAACTGCTCAGTGACGCCATGTACGAAAGCATGC
ACCCTGCTGGCACCGTGTTTGCCCCCATCCCCCAACCTTGGCATCACAAT
CTAGGAATCGTCCACGGTAAGGAGAGGGGTCATGAGCGGCTGATAATTAG
TTGTAGGTTCGTGTCAATCATTAGTATCCGTTCCCATTACGGCAATGATG
AGCCAGTGCAATGAGCCCAACCCGTTGCTCAGGATCAACACTGTTTATTG
ACCAACTGAAACCTGTTGCAGACGCCATGGAAAGCACCGGGCTGAGAGTG
GAGGACCACCCTCTCCTGGTCCACTACGTTTCCACGCGAGGAGGCCGACC
CTCCAGCGCAAATATTTTGCACCAGCGGCCCACTGCTGTTATGGTACTCA
TCGCTCACTGCGATGCAGGGGGAAGCCAGCCCTTCACATGCAACGACAAG
GTGACCTCTGAACATCCTTTCGGAGCTCCGGCGGGGACGGTGGCCATTCC
GAAATCATCTATGATTAGAGTTCCAGCTCCGGGCAGGAACCAAGCCGTAC
CGACTACAGCTTTGAGTTACGCCGTTAACAGGTGCGCATGACGTCTTTTA
TCAATGCCCCTCGAAAAATGTGGGTGGTTTGGTCCATATTGTTGTGTTTA
TCACCGCAGAACAGCAGCGTCTCATCATAGCGAGATTTCGTGAAGACTAT
TTTCGCTGGTTGTAGCGATCTAAACCCAGCCGCTTGTATCGTCGAATCCA
GGTTCACCTCTGTCGGAGACACGGTGTGCTGCTTGCCGATCGAAACATCG
TTAGAGATGTCTGGAGTCGCCTTGAGGACAGGCAGAAAGATCGAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:121896..123343-

>mRNA_P-littoralis_Contig87.64.1 ID=mRNA_P-littoralis_Contig87.64.1|Name=mRNA_P-littoralis_Contig87.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig87:121896..123343- (Pylaiella littoralis U1_48)
ATGACGCACACAGGAGGCGGTTGCGGTGCATCGGAGAGCTTTGACCAACG
CGACGACTTTGCCCACAGCCTTGGTGATAAAGCGAGAATCTGTGTGAAAT
GTAAGCCCGCCCTGGAGCAGCAGGGACGAGCTTCCAACCAAAAGGAGAGG
GCGGCTGACGGCGTTGTCACGTCCAGGAGTAGACGAAAGGAATCTGCGCG
TGTATTGAAGCCCATCAGCCCTACTGCCTGCGATATCTTGCAAGAGAGGA
GATCGTCGACCGTCGTACTTCACAAGGCCGACCCCTTTGAGAGAGACTCG
GAGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAGCGGCTAAACTTGT
CGTGCTGAACCTAGGGGCCGACCCTTCGCTTCTCTCACACACTTCCGATG
CTACTCGACGCCGTAAACTGCTCAGTGACGCCATGTACGAAAGCATGCAC
CCTGCTGGCACCGTGTTTGCCCCCATCCCCCAACCTTGGCATCACAATCT
AGGAATCGTCCACGACGCCATGGAAAGCACCGGGCTGAGAGTGGAGGACC
ACCCTCTCCTGGTCCACTACGTTTCCACGCGAGGAGGCCGACCCTCCAGC
GCAAATATTTTGCACCAGCGGCCCACTGCTGTTATGGTACTCATCGCTCA
CTGCGATGCAGGGGGAAGCCAGCCCTTCACATGCAACGACAAGGTGACCT
CTGAACATCCTTTCGGAGCTCCGGCGGGGACGGTGGCCATTCCGAAATCA
TCTATGATTAGAGTTCCAGCTCCGGGCAGGAACCAAGCCGTACCGACTAC
AGCTTTGAGTTACGCCGTTAACAGGTTCACCTCTGTCGGAGACACGGTGT
GCTGCTTGCCGATCGAAACATCGTTAGAGATGTCTGGAGTCGCCTTGAGG
ACAGGCAGAAAGATCGAGGTG
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