mRNA_P-littoralis_Contig87.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.63.1
Unique NamemRNA_P-littoralis_Contig87.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:120348..121877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size917
Hectar predicted targeting categoryother localisation
Exons3
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.8246384-UTR-P-littoralis_Contig87:120347..1206431680791743.8246384-UTR-P-littoralis_Contig87:120347..120643Pylaiella littoralis U1_48UTRP-littoralis_Contig87 120348..120643 -
1680791743.8706703-UTR-P-littoralis_Contig87:121817..1218771680791743.8706703-UTR-P-littoralis_Contig87:121817..121877Pylaiella littoralis U1_48UTRP-littoralis_Contig87 121818..121877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.8378837-CDS-P-littoralis_Contig87:120643..1209911680791743.8378837-CDS-P-littoralis_Contig87:120643..120991Pylaiella littoralis U1_48CDSP-littoralis_Contig87 120644..120991 -
1680791743.849403-CDS-P-littoralis_Contig87:121141..1213451680791743.849403-CDS-P-littoralis_Contig87:121141..121345Pylaiella littoralis U1_48CDSP-littoralis_Contig87 121142..121345 -
1680791743.860096-CDS-P-littoralis_Contig87:121808..1218171680791743.860096-CDS-P-littoralis_Contig87:121808..121817Pylaiella littoralis U1_48CDSP-littoralis_Contig87 121809..121817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.63.1prot_P-littoralis_Contig87.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 120644..121817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.63.1

>prot_P-littoralis_Contig87.63.1 ID=prot_P-littoralis_Contig87.63.1|Name=mRNA_P-littoralis_Contig87.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MYQECARETSDTVVGPRRLPKGVLSDTTPPKVHAMVKSRMDQDPNVNEED
ALFYIAKDMAKSMGWHIGGEKTGDVGAVLETKANKLYAARTCGIPLWGEI
IVRDHVKEAVQAAVGNTTTNLSQDLDFVRLVRVYNNKELRHMISKEESCN
SNSAMYMVVSASCPAYYAEVEETGSGSRTELEIIAS*
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mRNA from alignment at P-littoralis_Contig87:120348..121877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.63.1 ID=mRNA_P-littoralis_Contig87.63.1|Name=mRNA_P-littoralis_Contig87.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-littoralis_Contig87:120348..121877- (Pylaiella littoralis U1_48)
GGGCGCGAGACTTTTCGAGCCAGAGCAGAGCTTGACTTCAACAGGTCATT
CAAGGAAGGGATGTATCAGGTATGTCGAAACGCTCATCTATGCCTTTTCT
CAATAACCTCTTCGTCGACACACCGTGACTCAACTTGAAAGCGAACATAT
CACTTCGGTCACGCCTCTGGCCGTAAGATCTACCGTGAACCCCTCTGCCT
GCTCACCCCTCACCCTCCCCCCCCCTCCCGATTTGTTTTTTTGAGTTCAT
GCCTCGGGGTTGATTTTGTCGTAGCAGACTTTCGAAATATAGTTCGGGGG
GAAGTTCAAAACCGTGGAATTAACGACGGGGAGGTGTACTTTTCGTCCAA
ATCATGGAGGGCGGGGTGGGGGGCTGTGTGTGGAGGTAAATGTAGTGGAG
GTGGAGGAGAAGTAAGGGCACCCCCCCTATTATAGGCATGTTCTTTTGGG
TATGTGCATCAGCTGCCAGGAAATATTATTCACGTTGCGTGCACTCTGAC
ATTTGATCATTGTTTGACTTTGTTGGACACAGGAATGCGCACGCGAGACG
TCCGATACAGTCGTCGGACCCAGGCGTCTTCCGAAAGGCGTTCTTTCGGA
CACAACCCCGCCCAAGGTGCACGCTATGGTCAAATCTAGAATGGACCAGG
ATCCGAACGTGAACGAGGAGGATGCCCTCTTTTACATTGCAAAAGACATG
GCGAAATCCATGGGATGGCACATCGGAGGTGAAAAGGTGACACAAATATC
AACGACTGTTCCTTCCAGTAGAACAGGTATCTGGAAATAAAAAACCGACT
TGTGCGTACGGATCAAAGCCCCATTTCCTGAACAGATGCAGCCGGGTGAT
GACGCCCTTTATCCCCCCTAACGTGAAAACATACAGACAGGTGATGTCGG
AGCCGTGCTCGAGACCAAAGCGAACAAGCTATACGCCGCCAGGACTTGTG
GTATTCCGCTCTGGGGAGAAATCATCGTCAGAGACCACGTTAAAGAAGCA
GTCCAGGCCGCGGTGGGAAACACTACAACTAACCTTTCGCAAGACTTGGA
TTTTGTTCGACTTGTTCGCGTGTACAACAACAAAGAGCTGCGCCATATGA
TCAGCAAAGAAGAAAGCTGTAACTCGAATTCCGCTATGTACATGGTAGTG
AGCGCGTCATGCCCTGCATACTACGCCGAAGTAGAGGAAACCGGATCTGG
AAGCAGAACAGAACTTGAGATCATCGCCTCATAGGCTTTCGCTGACAAGT
CGACTCCGATGACGGAATTCCTCTGGCTGATGGCACCAGGGATGAGGATG
AACCCTCCCCTGCACCTCGAGCTCTGCGAACGCTTGCAGCCCAAGGACAG
ACGGCAGACTGTGTGCTGCAGCATGTCAGGGTTCGTGGTTGCGTGCAACC
TCACCTCACTGGAAGCTCCGGAGTCCCTCATAGACTCCGAATTACTGATA
CTCCCAGCTATGCATGACACGCCAAGGGAGAGGGAGCGTAGGAAGGAACT
CAGCAGGATGGAAGCGATTGCTGTTACTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:120348..121877-

>mRNA_P-littoralis_Contig87.63.1 ID=mRNA_P-littoralis_Contig87.63.1|Name=mRNA_P-littoralis_Contig87.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig87:120348..121877- (Pylaiella littoralis U1_48)
ATGTATCAGGAATGCGCACGCGAGACGTCCGATACAGTCGTCGGACCCAG
GCGTCTTCCGAAAGGCGTTCTTTCGGACACAACCCCGCCCAAGGTGCACG
CTATGGTCAAATCTAGAATGGACCAGGATCCGAACGTGAACGAGGAGGAT
GCCCTCTTTTACATTGCAAAAGACATGGCGAAATCCATGGGATGGCACAT
CGGAGGTGAAAAGACAGGTGATGTCGGAGCCGTGCTCGAGACCAAAGCGA
ACAAGCTATACGCCGCCAGGACTTGTGGTATTCCGCTCTGGGGAGAAATC
ATCGTCAGAGACCACGTTAAAGAAGCAGTCCAGGCCGCGGTGGGAAACAC
TACAACTAACCTTTCGCAAGACTTGGATTTTGTTCGACTTGTTCGCGTGT
ACAACAACAAAGAGCTGCGCCATATGATCAGCAAAGAAGAAAGCTGTAAC
TCGAATTCCGCTATGTACATGGTAGTGAGCGCGTCATGCCCTGCATACTA
CGCCGAAGTAGAGGAAACCGGATCTGGAAGCAGAACAGAACTTGAGATCA
TCGCCTCATAG
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