mRNA_P-littoralis_Contig87.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.52.1
Unique NamemRNA_P-littoralis_Contig87.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.400e-69
Identity = 124/158 (78.48%), Postives = 127/158 (80.38%), Query Frame = 1 
Query:    1 IAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQPSGAICPVFGACGTCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLR 474
            IAQACLAFVPSWTATFRSSRSQPPAS PAAATFSLSQPSG ICPVFGAC TCGAQ+FYPV GMTSLSAMSEG EEEGGGD+ AREAADGSPAADEIRAVQ                        D IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLR
Sbjct:   14 IAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
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BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.260e-54
Identity = 125/153 (81.70%), Postives = 130/153 (84.97%), Query Frame = 1 
Query:  169 FYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEEKEEXXXSXXXXXXXXXXXXX----DLLLKKEDRLPRIEQLRANNSPA 615
            FYPVRGMT LSAMSEGDEEEGGGD+ AREAAD  PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG++YLGMTDPEALLKQL    EQLRR      XXX XXXXXXXXXXXXX    +LLLK EDRL R EQ RANN+PA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 6.810e-54
Identity = 116/143 (81.12%), Postives = 122/143 (85.31%), Query Frame = 1 
Query:  187 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEEKEEXXXSXXXXXXXXXXXXXDLLLKKEDRLPRIEQLRANNSPA 615
            MTSLSAMSEGDEEEGGGD+DAREAAD  PAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGS+YLGMTDPEALLKQLGRKEEQ         XXX XXXXXXX      +LLLKKEDR  RIEQLRANN+PA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXX-----XXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.280e-50
Identity = 117/152 (76.97%), Postives = 121/152 (79.61%), Query Frame = 1 
Query:  187 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEEKEEXXXSXXXXXXXXXXXXXDLLLKKEDRLPRIEQLRANNSPAGI 621
            MTS SAMSEGDEEEGGGD+DAREAADGSPAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKE KE       XXXXXXXXXXX +LLKKEDRL RIEQLRANN+PAG+
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKE-------XXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGV 145
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BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.530e-33
Identity = 98/157 (62.42%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:  172 YPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSKYLGMTDPEALLKQLGRKEEQLRRKEEKEEXXXSXXXXXXXXXXXXXDLLLKKEDRLPRIEQLRANNSPAGIEASHYV 639
            YPVRG+TSLSA+SEG+EE+GGGD+D REAA GSPAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK             EKE   X XXXXXXXXXXXXX +L+K E RL  IEQ RANN+PAG EASHYV
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLK-------------EKERLGXXXXXXXXXXXXXXXQVLVK-EKRLFSIEQRRANNAPAGTEASHYV 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI2.400e-6978.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI3.260e-5481.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI6.810e-5481.12Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.280e-5076.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI2.530e-3362.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:105231..105872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size642
Hectar predicted targeting categorysignal peptide
Exons1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.6924314-CDS-P-littoralis_Contig87:105230..1058721680791743.6924314-CDS-P-littoralis_Contig87:105230..105872Pylaiella littoralis U1_48CDSP-littoralis_Contig87 105231..105872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.52.1prot_P-littoralis_Contig87.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 105231..105872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.52.1

>prot_P-littoralis_Contig87.52.1 ID=prot_P-littoralis_Contig87.52.1|Name=mRNA_P-littoralis_Contig87.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp
IAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQPSGAICPVFGACG
TCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQ
DEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQL
GRKEEQLRRKEEKEEQLRSEKEQLRRKEEQLRDLLLKKEDRLPRIEQLRA
NNSPAGIEASHYV*
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mRNA from alignment at P-littoralis_Contig87:105231..105872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.52.1 ID=mRNA_P-littoralis_Contig87.52.1|Name=mRNA_P-littoralis_Contig87.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig87:105231..105872+ (Pylaiella littoralis U1_48)
ATCGCACAAGCATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAG
GTCGTCACGCTCGCAGCCCCCTGCTTCCGCTCCTGCGGCGGCGACGTTTT
CGCTCTCGCAGCCCTCAGGTGCGATCTGCCCTGTGTTCGGGGCGTGTGGC
ACTTGTGGGGCGCAATATTTTTACCCGGTGCGAGGGATGACGAGCTTGAG
CGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATTATGATGCGC
GAGAAGCTGCCGATGGCAGTCCAGCGGCGGACGAGATTCGTGCGGTCCAG
GATGAGATCCGTGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGAC
GGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCGGGGG
GCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTA
GGCAGGAAGGAGGAGCAACTACGCAGGAAGGAGGAGAAGGAGGAGCAACT
ACgcagcgagaaggaGCAACTACGCAGGAAGGAGGAGCAGCTCCGCGACC
TCCTTTTGAAGAAGGAGGACCGGCTCCCCAGGATTGAGCAGCTCCGTGCC
AACAACTCCCCCGCAGGTATAGAAGCGTCCCATTATGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:105231..105872+

>mRNA_P-littoralis_Contig87.52.1 ID=mRNA_P-littoralis_Contig87.52.1|Name=mRNA_P-littoralis_Contig87.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig87:105231..105872+ (Pylaiella littoralis U1_48)
ATCGCACAAGCATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAG
GTCGTCACGCTCGCAGCCCCCTGCTTCCGCTCCTGCGGCGGCGACGTTTT
CGCTCTCGCAGCCCTCAGGTGCGATCTGCCCTGTGTTCGGGGCGTGTGGC
ACTTGTGGGGCGCAATATTTTTACCCGGTGCGAGGGATGACGAGCTTGAG
CGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATTATGATGCGC
GAGAAGCTGCCGATGGCAGTCCAGCGGCGGACGAGATTCGTGCGGTCCAG
GATGAGATCCGTGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGAC
GGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCGGGGG
GCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTA
GGCAGGAAGGAGGAGCAACTACGCAGGAAGGAGGAGAAGGAGGAGCAACT
ACgcagcgagaaggaGCAACTACGCAGGAAGGAGGAGCAGCTCCGCGACC
TCCTTTTGAAGAAGGAGGACCGGCTCCCCAGGATTGAGCAGCTCCGTGCC
AACAACTCCCCCGCAGGTATAGAAGCGTCCCATTATGTGTGA
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