mRNA_P-littoralis_Contig87.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.50.1
Unique NamemRNA_P-littoralis_Contig87.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.440e-14
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKNAG 120
            MLPLLK RAAKPRVLLAA+SRYNNK DG FLGYLP KNAG
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAG 40
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.440e-12
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKNAG 120
            MLPLLKRRAAKPRVLLAA+SRYN K DG FLGYLP KNAG
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAG 820
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.850e-12
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGY-----------LPGKNAG 120
            MLPLLKRRAAKPRVLLAA+SRYNNKHDGAFLG            LPGKNAG
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAG 441
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.280e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKNAG 120
            M+PLLKRRAAKPRVLLAALSRYN K DGAFLGYLP K+ G
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTG 484
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-10
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKN 114
            M+PLLKRRAA  RVLLAA+SRYNNK DGAFLGYLP KN
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKN 849
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-9
Identity = 31/40 (77.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKNAG 120
            MLP LKRRA KPRV LA LSRYNNK DG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.270e-8
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKN 114
            LP LKRRA KP VLLAALSRYNNK DG FLGY P KN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJ25_ECTSI2.440e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1W5_9PHAE1.440e-1287.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE6.850e-1274.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.280e-1185.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE5.430e-1084.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.890e-977.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI1.270e-881.08EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:99874..100087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2C8
PFAMsPkinase,Pkinase_Tyr
Model size120
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.09e-09
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
Cds size120
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.6474383-CDS-P-littoralis_Contig87:99873..999311680791743.6474383-CDS-P-littoralis_Contig87:99873..99931Pylaiella littoralis U1_48CDSP-littoralis_Contig87 99874..99931 -
1680791743.658919-CDS-P-littoralis_Contig87:100025..1000871680791743.658919-CDS-P-littoralis_Contig87:100025..100087Pylaiella littoralis U1_48CDSP-littoralis_Contig87 100026..100087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.50.1prot_P-littoralis_Contig87.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 99874..100087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.50.1

>prot_P-littoralis_Contig87.50.1 ID=prot_P-littoralis_Contig87.50.1|Name=mRNA_P-littoralis_Contig87.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=40bp
MLPLLKRRAAKPRVLLAALSRYNNKHDGAFLGYLPGKNAG
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mRNA from alignment at P-littoralis_Contig87:99874..100087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.50.1 ID=mRNA_P-littoralis_Contig87.50.1|Name=mRNA_P-littoralis_Contig87.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=214bp|location=Sequence derived from alignment at P-littoralis_Contig87:99874..100087- (Pylaiella littoralis U1_48)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCCTGTCTAGGTGCGTGGTGTTGTTTGATTCTTTGGTGTTTTTTGTAG
ACAATACACAATTTGAAAGTATACTAAGAATTTCCCCACCCATGACTTTT
CGACAGGTACAACAACAAGCACGATGGAGCTTTCCTCGGGTACTTGCCGG
GAAAAAACGCGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:99874..100087-

>mRNA_P-littoralis_Contig87.50.1 ID=mRNA_P-littoralis_Contig87.50.1|Name=mRNA_P-littoralis_Contig87.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=120bp|location=Sequence derived from alignment at P-littoralis_Contig87:99874..100087- (Pylaiella littoralis U1_48)
ATGCTCCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
GGCCCTGTCTAGGTACAACAACAAGCACGATGGAGCTTTCCTCGGGTACT
TGCCGGGAAAAAACGCGGGA
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