mRNA_P-littoralis_Contig87.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.30.1
Unique NamemRNA_P-littoralis_Contig87.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 1.850e-69
Identity = 122/156 (78.21%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:    1 IAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQPSGAICPVFGACGTCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQ 468
            IAQACLAFVPSWTATFRSSRSQPPAS PAAATFSLSQPSG ICPVFGAC TCGAQ+FYPV GMTSLSAMSEG EEEGGGD+ AREAADGSPAADEIRAVQ                        D IEAAIAGGS+YLGMTDPEALLKQLGRKEEQ
Sbjct:   14 IAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 169
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BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 9.310e-55
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:  187 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXXXXXXXXX--KKEDRLSRIEQLRANNSPA 594
            MTSLSAMSEGDEEEGGGD+DAREAAD  PAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGS+YLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXX          KKEDR SRIEQLRANN+PA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 8.350e-53
Identity = 125/149 (83.89%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:  169 FYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXXXXXXXXX-------KKEDRLSRIEQLRANNSPA 594
            FYPVRGMT LSAMSEGDEEEGGGD+ AREAAD  PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG++YLGMTDPEALLKQL +    XXXXXXXXXXXXXXXXXXXXXXX       K EDRLSR EQ RANN+PA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.130e-48
Identity = 110/145 (75.86%), Postives = 113/145 (77.93%), Query Frame = 1 
Query:  187 MTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXXXXXXXXXKKEDRLSRIEQLRANNSPAGI 600
            MTS SAMSEGDEEEGGGD+DAREAADGSPAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGSKYLGMTDPEALLKQLGRKEEQ        XXXXXXXXXXXX   KKEDRLSRIEQLRANN+PAG+
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGV 145
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BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.590e-34
Identity = 96/150 (64.00%), Postives = 104/150 (69.33%), Query Frame = 1 
Query:  172 YPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSKYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXXXXXXXXXKKEDRLSRIEQLRANNSPAGIEASHYV 618
            YPVRG+TSLSA+SEG+EE+GGGD+D REAA GSPAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+  R         XXXXXXXXXXXXXXX    KE RL  IEQ RANN+PAG EASHYV
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKER-------LGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGTEASHYV 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI1.850e-6978.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI9.310e-5586.23Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI8.350e-5383.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI3.130e-4875.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI3.590e-3464.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:75831..76451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size621
Hectar predicted targeting categorysignal peptide
Exons1
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.5621278-CDS-P-littoralis_Contig87:75830..764511680791743.5621278-CDS-P-littoralis_Contig87:75830..76451Pylaiella littoralis U1_48CDSP-littoralis_Contig87 75831..76451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.30.1prot_P-littoralis_Contig87.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 75831..76451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.30.1

>prot_P-littoralis_Contig87.30.1 ID=prot_P-littoralis_Contig87.30.1|Name=mRNA_P-littoralis_Contig87.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp
IAQACLAFVPSWTATFRSSRSQPPASAPAAATFSLSQPSGAICPVFGACG
TCGAQYFYPVRGMTSLSAMSEGDEEEGGGDYDAREAADGSPAADEIRAVQ
DEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQL
GRKEEQLRRKEEKEEQLRGLLLQLRGLLLKKEDRLSRIEQLRANNSPAGI
EASHYV*
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mRNA from alignment at P-littoralis_Contig87:75831..76451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.30.1 ID=mRNA_P-littoralis_Contig87.30.1|Name=mRNA_P-littoralis_Contig87.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig87:75831..76451- (Pylaiella littoralis U1_48)
ATCGCACAAGCATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAG
GTCGTCACGCTCGCAGCCCCCTGCTTCCGCTCCTGCGGCGGCGACGTTTT
CGCTCTCGCAGCCCTCAGGTGCGATCTGCCCTGTGTTCGGGGCGTGTGGC
ACTTGTGGGGCGCAATATTTTTACCCGGTGCGAGGGATGACGAGCTTGAG
CGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATTATGATGCGC
GAGAAGCTGCCGATGGCAGTCCAGCGGCGGACGAGATTCGTGCGGTCCAG
GATGAGATCCGTGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGAC
GGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCGGGGG
GCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTA
GGCAGGAAGGAGGAGCAACTACGCAGGAAGGAGGAGAAGGAGGAGCAGCT
CCGCGGCCTCCTTTTGCAGCTCCGCGGCCTCCTTTTGAAGAAGGAGGACC
GGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACTCCCCCGCAGGTATA
GAAGCGTCCCATTATGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:75831..76451-

>mRNA_P-littoralis_Contig87.30.1 ID=mRNA_P-littoralis_Contig87.30.1|Name=mRNA_P-littoralis_Contig87.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig87:75831..76451- (Pylaiella littoralis U1_48)
ATCGCACAAGCATGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAG
GTCGTCACGCTCGCAGCCCCCTGCTTCCGCTCCTGCGGCGGCGACGTTTT
CGCTCTCGCAGCCCTCAGGTGCGATCTGCCCTGTGTTCGGGGCGTGTGGC
ACTTGTGGGGCGCAATATTTTTACCCGGTGCGAGGGATGACGAGCTTGAG
CGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATTATGATGCGC
GAGAAGCTGCCGATGGCAGTCCAGCGGCGGACGAGATTCGTGCGGTCCAG
GATGAGATCCGTGGTGTAGAGCGAAAGATCGAGGATGCAGAGGAGGAGAC
GGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCGGGGG
GCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTA
GGCAGGAAGGAGGAGCAACTACGCAGGAAGGAGGAGAAGGAGGAGCAGCT
CCGCGGCCTCCTTTTGCAGCTCCGCGGCCTCCTTTTGAAGAAGGAGGACC
GGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACTCCCCCGCAGGTATA
GAAGCGTCCCATTATGTGTGA
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