mRNA_P-littoralis_Contig87.16.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.16.2
Unique NamemRNA_P-littoralis_Contig87.16.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.200e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            Q D    AG   I  T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E+T E+FA  +G+ + EP  +++A TVD
Sbjct:  289 QLDLTTVAGEEYI--TFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGE-DVEPKDVFLAFTVD 366
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.990e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            Q D   AAG   I  T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI ++T E+F+  +G+ + +P+ +++A TVD
Sbjct:   96 QLDLTTAAGEEYI--TFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGE-SVQPSDVFLAFTVD 173
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.050e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            Q D   AAG   I  T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI ++T E+F+  +G+ + +P+ +++A TVD
Sbjct:  291 QLDLTTAAGEEYI--TFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGE-SVQPSDVFLAFTVD 368
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.890e-10
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            Q D    AG   I  T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI  +T E+F  ++G  + E   +++A TVD
Sbjct:  100 QLDLTTVAGEEYI--TFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMG-GSVESQDVFLAFTVD 177
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.530e-9
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  133 FCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE--------VTTEFFAPIVGDANAEPAKIYVAATVD 336
            + T +VS+I    T + R+ L T+AFPG+HTA+D++PWI +        +TTEFFA ++G+ N +P  +++A TVD
Sbjct:  282 YITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGE-NVQPKDVFLAFTVD 356
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.810e-9
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            Q D    AG   I  T  VS++ +G T++ R++L T+AFPG+HTA D+ PWI  +T E+   ++G  + E   +++A TVD
Sbjct:  100 QLDLTTVAGEEYI--TFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMG-GSVESQDVFLAFTVD 177
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.500e-9
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:  133 FCTLTVSFIPRGHTE-MERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANAEPAKIYVAATVD 336
            + T TVS++ +G T+ + R+ L T+AFPG+HTA D+ PWI  +T E+F  ++G  + +P  +++  TVD
Sbjct:  107 YITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGP-SVQPHDVFLGFTVD 174
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BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.540e-6
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIRE 255
            Q D   AAG   I  T TV+F+ +G T+M R+ L  +AFPG+HTA D+ PWI +
Sbjct: 1375 QLDLTTAAGEEYI--TFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426
[Close]
BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.740e-5
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   94 QKDGKPAAGSRSIFCTLTVSFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEF 270
            Q D    AG   I  T TVS++ +G T++ R+ L  +AFPGTHTA D+ PWI E+   F
Sbjct:  405 QLDLTTVAGEEYI--TFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEELRCLF 461
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.200e-1245.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE2.990e-1243.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE3.050e-1243.21Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JQI6_9PHAE5.890e-1040.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.530e-942.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZU3_9PHAE3.810e-939.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE9.500e-940.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVP4_9PHAE9.540e-648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE1.740e-545.76Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:50093..51692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons4
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791743.4476614-CDS-P-littoralis_Contig87:50094..501751680791743.4476614-CDS-P-littoralis_Contig87:50094..50175Pylaiella littoralis U1_48CDSP-littoralis_Contig87 50095..50175 -
1680791743.4596062-CDS-P-littoralis_Contig87:50508..506311680791743.4596062-CDS-P-littoralis_Contig87:50508..50631Pylaiella littoralis U1_48CDSP-littoralis_Contig87 50509..50631 -
1680791743.4782941-CDS-P-littoralis_Contig87:50958..510081680791743.4782941-CDS-P-littoralis_Contig87:50958..51008Pylaiella littoralis U1_48CDSP-littoralis_Contig87 50959..51008 -
1680791743.4898775-CDS-P-littoralis_Contig87:51610..516921680791743.4898775-CDS-P-littoralis_Contig87:51610..51692Pylaiella littoralis U1_48CDSP-littoralis_Contig87 51611..51692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.16.2prot_P-littoralis_Contig87.16.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 50095..51692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.16.2

>prot_P-littoralis_Contig87.16.2 ID=prot_P-littoralis_Contig87.16.2|Name=mRNA_P-littoralis_Contig87.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
EHSTVWAATDDGRGSREARTTRGAILHGSSDQKDGKPAAGSRSIFCTLTV
SFIPRGHTEMERLTLTTKAFPGTHTASDVDPWIREVTTEFFAPIVGDANA
EPAKIYVAATVD
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mRNA from alignment at P-littoralis_Contig87:50093..51692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.16.2 ID=mRNA_P-littoralis_Contig87.16.2|Name=mRNA_P-littoralis_Contig87.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1600bp|location=Sequence derived from alignment at P-littoralis_Contig87:50093..51692- (Pylaiella littoralis U1_48)
GAGCACTCCACGGTATGGGCCGCCACGGACGATGGGCGTGGATCAAGGGA
GGCCAGAACTACCAGGGGTGCCATCCTACATGGTGAGGTACCGGTGCGCG
CTGCGCGTTGCTGCTGTGTGTGGTGCTGTTTGAAAAAAAAATAAAAAATT
GCGGCAGATTTTTTTTTTTTCGCCGCAAAGAAGAAAAGAAAAGTATATAC
GTTGAATAACATACCCCAACAGAGCTGCCGGGGTTTTTCAGCTGCGATTT
CTCTTGTTGTTGTGAGGTAGGGAGTGCATCAACCGGCCCTCCTCCAACCG
CTCTTTGGACAGATTGAATGTTGGTGGCAGACTGTGATATAGAGCAGACC
AAAACTATTTTTTCCCCCTTTCAGAACTGCGCTGAATAAAATTTTATTTA
TTGATGTAAATCAGTGGCGCTTTTATCGTCACCACTCAAGCGATATATAA
AAGGCACCATGCAGACTAACTATTAGGTGTATTTTATTTTCAATTAAGTT
ATTTATTGTTTGGGGGGGACAATATATATATGTGTAGGTGTTTTTTTTTA
AATTATTTAATTAATTTTTGGTTTTGGGCAGGGGATATCTTGTGTGTTTA
TGAAGTACCATCTCATACAATTTGACGAATGACATCGAACACCTGCTGCT
GCTGCTATGTTGCATGTTCGTTGCAACCCTCCAGGAAGCTCGGATCAGAA
GGACGGCAAGCCTGCAGCGGGGTCACGCTCGATCGCCCAACACTTCATCC
AACCCATGACACCCACCGAGAAGAGAAAGCACCAGGTCCGATACGTCATC
ATGTGCTGCGTCGACATGCGGCCGTTCTCGATGGCGCATCGGGCTGGGTT
CCAGTACTTCGTCGGCGGCTTGAGCCCGGCGTACGTAACGGAGACGATAC
ACAAGAGCACACTTTCAAACATTTTGGATGCCTTGGCCGCCGATGTTCGC
GCCAACCTCATCACGAAGCTGAAGGACCACGTAGATTCCTGCAAGAAACT
CGGGTGGGGCGGGCCCTTCTTTGGCGTGCAGTCGGACCTAACCAGTACGC
ACGGCACCGAGTTCTGCACTCTCACCGTTTCCTTCATCCCGCGGGGTCAC
ACGGAGATGGAGCGACTGACGCTGACGACAAAGGCGTTCCCGGGTACGCA
CACGGCAAGCGATGTGGACCCGTGGATCCGTGAGGTGAGTCTCTCTATTT
AGTTTTTACTCCGTTGTTTTTTTTTTTTAGTTTACTCTGTTGGTTGATTG
TTGATTCTAATCTGTATTTTTAGCCGTCCCGGAGTATTTTTTCACGCGTG
GCAGAACTTCTAGAAGGGATTATCATTGATATGAATTTCGCAGGCAATTT
ATTGTATTCTATTTATTTATGATCGACACCTCTTGCGTTCGAGGACACCA
ATTGTCGCGTTGGTTTGTATCAACCTGTCCTCAATCGTGCCTTCATTTCT
TCTGAAAAACCCACACCCAAACCCCATGCCTGGCATACGCTGATCGTGTT
CCTTTCGCGTTGAGCAGGTTACTACCGAGTTCTTCGCGCCTATCGTGGGA
GACGCCAACGCTGAGCCAGCGAAGATCTACGTTGCTGCCACAGTCGACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:50093..51692-

>mRNA_P-littoralis_Contig87.16.2 ID=mRNA_P-littoralis_Contig87.16.2|Name=mRNA_P-littoralis_Contig87.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig87:50093..51692- (Pylaiella littoralis U1_48)
GAGCACTCCACGGTATGGGCCGCCACGGACGATGGGCGTGGATCAAGGGA
GGCCAGAACTACCAGGGGTGCCATCCTACATGGAAGCTCGGATCAGAAGG
ACGGCAAGCCTGCAGCGGGGTCACGCTCGATCTTCTGCACTCTCACCGTT
TCCTTCATCCCGCGGGGTCACACGGAGATGGAGCGACTGACGCTGACGAC
AAAGGCGTTCCCGGGTACGCACACGGCAAGCGATGTGGACCCGTGGATCC
GTGAGGTTACTACCGAGTTCTTCGCGCCTATCGTGGGAGACGCCAACGCT
GAGCCAGCGAAGATCTACGTTGCTGCCACAGTCGAC
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