mRNA_P-littoralis_Contig87.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.58.1
Unique NamemRNA_P-littoralis_Contig87.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:113918..116063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size767
Hectar predicted targeting categoryother localisation
Exons2
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.8679879-UTR-P-littoralis_Contig87:113917..1142351680791742.8679879-UTR-P-littoralis_Contig87:113917..114235Pylaiella littoralis U1_48UTRP-littoralis_Contig87 113918..114235 +
1680791742.8835125-UTR-P-littoralis_Contig87:115616..1156401680791742.8835125-UTR-P-littoralis_Contig87:115616..115640Pylaiella littoralis U1_48UTRP-littoralis_Contig87 115617..115640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.895893-CDS-P-littoralis_Contig87:115640..1160631680791742.895893-CDS-P-littoralis_Contig87:115640..116063Pylaiella littoralis U1_48CDSP-littoralis_Contig87 115641..116063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.58.1prot_P-littoralis_Contig87.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 115641..116063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.58.1

>prot_P-littoralis_Contig87.58.1 ID=prot_P-littoralis_Contig87.58.1|Name=mRNA_P-littoralis_Contig87.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MADTLATSSSDTAPAGMAEAAPAPAAGSTNIAEILYPYSDLSRTQQAAYS
EAMWSGFPDSIKAGLCNPAHAARLHQAAESDGHQAQAAAKAILVEAATDK
HQAAQAQLRSTEQEHAVLAAQIADGERHMRQLMETASADAA
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mRNA from alignment at P-littoralis_Contig87:113918..116063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.58.1 ID=mRNA_P-littoralis_Contig87.58.1|Name=mRNA_P-littoralis_Contig87.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2146bp|location=Sequence derived from alignment at P-littoralis_Contig87:113918..116063+ (Pylaiella littoralis U1_48)
GGAGAACGAAAGTACGGGCAGCAGTTGAAGTGGTACAGCCAGGTTGACAG
GTGTACGTATGCAGTTCTGTGGTACTTTGTTGGCAGTTCCCAAAAGTAGA
AGTTGACCCGTGCGAGCGGAAGCGAGCCCCCCGCACGCAACCGCTTCACG
CCCCCTCTCGCTCACAATCCAATCTGGAGGAGCAAGCGAGAGGGAGCTTA
GAAACAATCAAGAAAGAGAGAAACGACACATCAGTTCAGCTTGCGTTTGC
AGTGATCACACCACGTTCGACACGAGAGAATCTCATCACATTTGGCGCCA
CGGCAAGCAACGTCCACGGTGAGCTGTCTGTCGTCTTAGTATCTCTTCTC
TGTTCCTGAGCTCCTTCAACCGCTCCTCCCCCCCCGCCTTTTGCTTTCAG
TTCGTACTGGTTTCAGTGCAGCCACTGCTGAAACATTTTGTTCTTAGTAT
TTCCAGTATGAACTGGTCCGCTGTCTTCGTAGTTTCATATTTTTGTTTCG
TGATCGAACATCCGAGTACGTAACGAGATGTCTTCGGATTCAGCTTCCTC
CAGCCCTGTGCACAACCGTACTAGCAACAGCAGTGATAGCCCGGCGAGTG
CCACGGTATCGCTTCCTGCTTCATCTGGTCACGGTAGTGAGCTTGACAGT
GTGCTCTCGCTCAAAGCTGAAAACGCAGCGTCGCTTCAGCATGAAACTGC
TGCAGCAGCCGACCACATGATGAGTTCCGTTGAGTTACTCACACACACAA
GCAGTCACACTCAAACCATGGCCACGGCTTCGCAAGCCCCAGCCATGAGT
TGTGCACGGCCTCCTGCAGTAGCGCCTCCAATTGCTGTAGAATCAGGCCC
TGATGTACAGACCAGTTCAGTACATCCGTCTGTTTCAGTAATGGCCTCTG
CCGCTGTATCTGATCAGGTACCTGTATCGGTCAATGCAGCCTCTACTACT
GTGGTACTGCTGTTAGAAAATTCCGAAACTACTGCTGTACGATCTGAAAT
GGATGAAACTACTGCAGCTTTGTCGCACACACTATCCCTCGAGCACAGGC
TCGAGAGATCAAACACACCAATGCTTGACTCCGTGCTTAAAGTACTCCGT
GAGCTCAGCACCTCACCCGAGGCCTCGGGATCTTCTTGTCCATCCGAGTC
TCCACCTTCGGGATCTTCTTGTCCATCCGAGTCTCCACCTTCGGGATCTT
CTTGTCCATCCGAGTCTCCGCCTCCGGGATGCGGGGAAAAATCGGATGCG
TTCACGCACCCTTCCACAACAACTGTCATCTCTGGCGAGACTTCGACAGG
GGGAAAGTCGGTTGCGTCCACGCATCCCCCCCCAACAGCAGTCATCTCGG
ATGAGACTTCGACTCAGGATTCGGCTGCACTCTCGCGCCTTTCCCGCACA
GCTGTATTCTCGGAGGAGACTTCGGCGCTGAAAATTTTGAACATGCTTCT
TCACGCGTGGATATCACTGCTTCACCTTTAAGTCATGCAGTTGCATCGGG
CAGCACCGCTGCGGCTCGCCCGCCCCCAGCCAAGCCCATGCCATCAATCA
CTCGAACACAGAACGCATTACGGGACGCACGTCGGATTCGCCGGTCAAAT
CAGTACACTTTGCCTACTGCTGCACGCACTGCTTTTGACAAAACGCCCCT
TCCGACGCCCACAACAACAACGCGTGCGCTCTCCTTGCGCGGCATACAGA
CAACACCGGCCCCGGACACCAATATGGCGGACACTTTGGCAACTAGTTCA
TCAGACACCGCGCCCGCCGGAATGGCCGAGGCAGCACCAGCTCCTGCTGC
GGGCTCCACGAACATCGCCGAGATCCTGTACCCGTACAGTGATCTCTCAC
GCACCCAACAGGCGGCCTACTCGGAGGCAATGTGGTCGGGCTTTCCCGAC
AGCATCAAGGCGGGCCTGTGCAACCCGGCCCATGCAGCCCGCTTGCACCA
AGCGGCCGAGTCCGATGGACATCAGGCCCAGGCAGCGGCCAAGGCCATCC
TCGTGGAGGCTGCCACCGACAAGCACCAGGCGGCGCAAGCCCAGCTTCGC
TCCACCGAGCAGGAACACGCGGTTTTGGCGGCCCAAATCGCGGACGGAGA
ACGTCACATGAGGCAGCTCATGGAAACCGCCTCCGCCGACGCGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:113918..116063+

>mRNA_P-littoralis_Contig87.58.1 ID=mRNA_P-littoralis_Contig87.58.1|Name=mRNA_P-littoralis_Contig87.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig87:113918..116063+ (Pylaiella littoralis U1_48)
ATGGCGGACACTTTGGCAACTAGTTCATCAGACACCGCGCCCGCCGGAAT
GGCCGAGGCAGCACCAGCTCCTGCTGCGGGCTCCACGAACATCGCCGAGA
TCCTGTACCCGTACAGTGATCTCTCACGCACCCAACAGGCGGCCTACTCG
GAGGCAATGTGGTCGGGCTTTCCCGACAGCATCAAGGCGGGCCTGTGCAA
CCCGGCCCATGCAGCCCGCTTGCACCAAGCGGCCGAGTCCGATGGACATC
AGGCCCAGGCAGCGGCCAAGGCCATCCTCGTGGAGGCTGCCACCGACAAG
CACCAGGCGGCGCAAGCCCAGCTTCGCTCCACCGAGCAGGAACACGCGGT
TTTGGCGGCCCAAATCGCGGACGGAGAACGTCACATGAGGCAGCTCATGG
AAACCGCCTCCGCCGACGCGGCC
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