mRNA_P-littoralis_Contig120.92.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.92.2
Unique NamemRNA_P-littoralis_Contig120.92.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 6.890e-100
Identity = 166/218 (76.15%), Postives = 168/218 (77.06%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPRREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 634
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYP GF+P REGSDGAKLPVYMFLQQG LEEGVQEH TA VHA VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.380e-54
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDLTKGNGPNYPRGFQPRREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT D TKGNGPNYPRGF+P REGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.480e-22
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:  663 GMGCHKAPTASQAAQAGMHGDTCRLSHGERRRDSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNANHVFETRS 905
            GMG HKAPTA+QAA+   HGDTCR+SHG +RR++SRS G  F++Q  A++RVALPVNA ER EVVRAATW   +HVFE+R+
Sbjct:  812 GMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.260e-15
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:  663 GMGCHKAPTASQAAQAGMHGDTCRLSHGERRRDSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNANHVFETRS 905
            G G HK PTA QA +A   GDT R+ HG RRR+SSRS G  F ++    +R A P NA ER +VVRA T  +A+HVFE+RS
Sbjct:  588 GRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
[Close]
BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 637
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.92.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE6.890e-10076.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE1.380e-5494.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE2.480e-2265.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.260e-1554.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE2.290e-1459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:510456..512077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size968
Hectar predicted targeting categoryother localisation
Exons5
Cds size744
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.92.2prot_P-littoralis_Contig120.92.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 510460..511857 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.7007644-UTR-P-littoralis_Contig120:510455..5104591680789515.7007644-UTR-P-littoralis_Contig120:510455..510459Pylaiella littoralis U1_48UTRP-littoralis_Contig120 510456..510459 +
1680789515.775594-UTR-P-littoralis_Contig120:511857..5120771680789515.775594-UTR-P-littoralis_Contig120:511857..512077Pylaiella littoralis U1_48UTRP-littoralis_Contig120 511858..512077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.7143211-CDS-P-littoralis_Contig120:510459..5106361680789515.7143211-CDS-P-littoralis_Contig120:510459..510636Pylaiella littoralis U1_48CDSP-littoralis_Contig120 510460..510636 +
1680789515.727904-CDS-P-littoralis_Contig120:510844..5110871680789515.727904-CDS-P-littoralis_Contig120:510844..511087Pylaiella littoralis U1_48CDSP-littoralis_Contig120 510845..511087 +
1680789515.738019-CDS-P-littoralis_Contig120:511246..5114471680789515.738019-CDS-P-littoralis_Contig120:511246..511447Pylaiella littoralis U1_48CDSP-littoralis_Contig120 511247..511447 +
1680789515.7537138-CDS-P-littoralis_Contig120:511715..5117481680789515.7537138-CDS-P-littoralis_Contig120:511715..511748Pylaiella littoralis U1_48CDSP-littoralis_Contig120 511716..511748 +
1680789515.7651184-CDS-P-littoralis_Contig120:511767..5118571680789515.7651184-CDS-P-littoralis_Contig120:511767..511857Pylaiella littoralis U1_48CDSP-littoralis_Contig120 511768..511857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.92.2

>prot_P-littoralis_Contig120.92.2 ID=prot_P-littoralis_Contig120.92.2|Name=mRNA_P-littoralis_Contig120.92.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDA
QQATPDLTKGNGPNYPRGFQPRREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHARVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
KGGTPVSDILEMRFAHIRGWNGVSQGSYGVSGGSSWNARRYLSAVPR*
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mRNA from alignment at P-littoralis_Contig120:510456..512077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.92.2 ID=mRNA_P-littoralis_Contig120.92.2|Name=mRNA_P-littoralis_Contig120.92.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1622bp|location=Sequence derived from alignment at P-littoralis_Contig120:510456..512077+ (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCT
TGGGGACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACCTCACGAAGGTGCGCCAAATTGGCGCAC
CAATCGACTTATCTGTTTTGTGCAGTACTGAGGGCGTACGAGGTTGACGG
CACTCTGTTTGGTTTCATATGCGCCGTTTGAAGTCGGTGGTCGTCCTCTT
TTATTTTCGCAACAGCGGCCCCAAGATAACGGGCATATACGAAGATGATC
GTTGGCTACTGTCTAAATATGCATGTTTATTCTTTGCAGGGGAATGGGCC
GAACTATCCTCGCGGGTTTCAACCACGTAGGGAGGGAAGCGACGGGGCGA
AGCTACCTGTGTACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTG
CAAGAACACTGCACCGCTGGAGTGCACGCTCGTGTTGCTCGGTGGTGGTC
TAGCAACGCGGACAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCT
CGACCGGCAAAATCTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAG
TGGTCGTCGTATACGCGCTATTCAATGGACGTCTTTATCCAAGTACCCGT
CTCTTGCAACCTTGCTGCCCCTCCTATGTGCCGGCGTTATTTACGCAGTG
ATTCTCGTGGGATGTTGGCCGATTTATATAACCCGCGCCAGGACGAGGAC
CTCGCCTGCTACTACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGAC
GTGGGTGCTGTCGAGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGT
GGAGTTTTTGTCTACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGC
TCATGGAAGTTCAAGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCT
ATCCTGGTGATGTGCGCGGTTGAATTTTGTCTGTGTTGTAGAGATTGCAG
ATGAGTGGGCTACCTGGCGTGATAGGGCGCGCCCGTGCTGGTCAATAATC
TGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTTT
TGTTGGCTGGCGCGACGCTATCGTCGTGTGGTGCTGGTGTCAATTAACTC
CTTTATGGCCGTACGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCA
TCTCACCCAGGACATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAA
TGGGCACATAAGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTC
AGGCGGCTCAAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGT
GAACGGCGTCGCGATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCA
ACAGGGAGCAACTCTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAG
GAGAAGTAGTGAGAGCCGCCACGTGGCGCAATGCAAACCATGTGTTTGAG
ACGCGCTCGGTGTGAAGTAGTGCTGTGTGTCGCGTGCTGTGTAACGCCAA
AGTAGGAGCTTTCGCTTTGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:510456..512077+

>mRNA_P-littoralis_Contig120.92.2 ID=mRNA_P-littoralis_Contig120.92.2|Name=mRNA_P-littoralis_Contig120.92.2|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig120:510456..512077+ (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGCTTGGG
GACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACCTCACGAAGGGGAATGGGCCGAACTATCCTCG
CGGGTTTCAACCACGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCACGCTCGTGTTGCTCGGTGGTGGTCTAGCAACGCGGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAGGGTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACAT
AAGGGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCT
CAAGCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGA
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