mRNA_P-littoralis_Contig87.149.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.149.1
Unique NamemRNA_P-littoralis_Contig87.149.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:302879..304511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size654
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.6167836-UTR-P-littoralis_Contig87:302878..3029501680791742.6167836-UTR-P-littoralis_Contig87:302878..302950Pylaiella littoralis U1_48UTRP-littoralis_Contig87 302879..302950 +
1680791742.6587603-UTR-P-littoralis_Contig87:304349..3045111680791742.6587603-UTR-P-littoralis_Contig87:304349..304511Pylaiella littoralis U1_48UTRP-littoralis_Contig87 304350..304511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.633149-CDS-P-littoralis_Contig87:302950..3032551680791742.633149-CDS-P-littoralis_Contig87:302950..303255Pylaiella littoralis U1_48CDSP-littoralis_Contig87 302951..303255 +
1680791742.645848-CDS-P-littoralis_Contig87:304234..3043491680791742.645848-CDS-P-littoralis_Contig87:304234..304349Pylaiella littoralis U1_48CDSP-littoralis_Contig87 304235..304349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.149.1prot_P-littoralis_Contig87.149.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 302951..304349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.149.1

>prot_P-littoralis_Contig87.149.1 ID=prot_P-littoralis_Contig87.149.1|Name=mRNA_P-littoralis_Contig87.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MFHRDSTTIHTVKDYIDDFLARFSHPKAAQYRFGAPARLLACSLLHGVGP
YQTRLSDRSTPRQKPHSPALFSVSAGSAAQLATRRLLFCREGHLRLGTHG
PRIILPAAAPCSCREGTHRSVMAAPYPRRRWGGCRGCSE*
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mRNA from alignment at P-littoralis_Contig87:302879..304511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.149.1 ID=mRNA_P-littoralis_Contig87.149.1|Name=mRNA_P-littoralis_Contig87.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1633bp|location=Sequence derived from alignment at P-littoralis_Contig87:302879..304511+ (Pylaiella littoralis U1_48)
GGAAAATATGACACCCGGATTGGAGGTCTAAATTGGACAGACCCAGGAAT
AATCAGACAGCGGGACGAAAAAATGTTCCACAGGGATAGCACGACGATCC
ACACTGTCAAAGACTACATAGATGATTTTTTAGCAAGATTTTCGCATCCA
AAGGCGGCGCAATACCGCTTTGGCGCGCCTGCTCGCCTGCTCGCCTGCTC
GCTTTTGCATGGGGTAGGACCCTATCAAACAAGACTCTCTGATAGGTCCA
CACCCCGACAGAAACCCCACAGTCCCGCCCTTTTCTCTGTCAGCGCGGGG
AGCGCGGCACAACTCGCCACACGCCGCCTGTTGTTCTGTCGGGAAGGGCA
CCTACGTCTCGGCACCCACGGCCCAAGGTGCGAGTGCACGATGGCAGGAA
GGGTGGGGGTATCGTCTGCGTTCGTTTGTAGTGCTGCAGGTTCTTCGGCT
GCCTCCTCCACATCTGGTACTACTTGTACTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTCTCTGTTGGATCTGGTACTACTGCGCCAA
CGGCTGCTGCTGTTTCTGCTGCTGTACTCGTCCTGCTACTGTACTGCTGT
GCTGCTGATCCGACTAGGGTCTTGACGGGTAGTTGACAGTCGGCTGGTTG
TTGTTGTTTCAATTGCTGTGATATTGCTGTTGATGTTGCTGATGCTGATT
TTGTGTTTTTGCGTCAGTTTTATCGAGTAAAACTCGCCCCGTACGTCGTC
CTCCTTCACATGCTGAACAGGTGTTCACGAGTGAGTTGACATTCGACTGG
TTGTTGTTTTCACTTTGGTTGTACTTCGGTTGTGTTGCTGTTGCTGTTGC
CGCTGTGCTGGTGCTGTAGTAGTAGTGTTTGATGTTGAGTAAAACTGGCC
CCATACTTCTGGCTTCGCATTCAGCCAGCTCGAGAAGAAGCTGGAGTCGC
AGTTACACTGGGTAGGCCCGAAACGGTCGGATAGGGAGCCGTTAAACATG
TTCTATTTATTCACGTGACATCACGGATGTCAGGCGGGGTATCAAGTCGT
ACCTTATGTTGAGGGGGGCGTGGTCTGAGATGAGGGCCAAGGAGACGTGG
ATCAACATCGCATAGCCTCGGAGGTAACCATCACATGGCTAGCGGGATCG
CTCTGAGCGGAACCCCGTTGCAGTGCCCTGTGCAAAAAATTGTCTGTAAC
CTCCAACGCCGGTTTGGGCCCCGCAATCTTGCCCTGTGCCCTTTAAGTTG
CAGGTGCACGGCACCGTTTTTCGAAGATGACGTGATTACGTTTCCTTACT
AGTCGTCCCCTACTTTCCGTCGTCATGCCCTCCTTCCTTGGAACCCACTT
TTTCAGGATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGGAGGGGA
CTCATCGCAGCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGGGGA
TGCAGGGGGTGCAGTGAATGAAGAGTGCGCAACACGCATCCAGCCTCCCC
ACCCGTCCTCGCTTTTAACAACACACGCACACACACGTGTGGTGGGATTT
ATTTGTGGTGCATGTGTGCGGGGATGGGCGCAGGGAGTTGGCAGGGAAAG
GTGCAGGGGAGGGTTCGGGGAAAGGTGCAGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:302879..304511+

>mRNA_P-littoralis_Contig87.149.1 ID=mRNA_P-littoralis_Contig87.149.1|Name=mRNA_P-littoralis_Contig87.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig87:302879..304511+ (Pylaiella littoralis U1_48)
ATGTTCCACAGGGATAGCACGACGATCCACACTGTCAAAGACTACATAGA
TGATTTTTTAGCAAGATTTTCGCATCCAAAGGCGGCGCAATACCGCTTTG
GCGCGCCTGCTCGCCTGCTCGCCTGCTCGCTTTTGCATGGGGTAGGACCC
TATCAAACAAGACTCTCTGATAGGTCCACACCCCGACAGAAACCCCACAG
TCCCGCCCTTTTCTCTGTCAGCGCGGGGAGCGCGGCACAACTCGCCACAC
GCCGCCTGTTGTTCTGTCGGGAAGGGCACCTACGTCTCGGCACCCACGGC
CCAAGGATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGGAGGGGAC
TCATCGCAGCGTCATGGCAGCGCCTTACCCAAGGCGGCGTTGGGGGGGAT
GCAGGGGGTGCAGTGAATGA
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