mRNA_P-littoralis_Contig87.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.67.1
Unique NamemRNA_P-littoralis_Contig87.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:124768..126282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size319
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.5119913-CDS-P-littoralis_Contig87:124767..1250041680791742.5119913-CDS-P-littoralis_Contig87:124767..125004Pylaiella littoralis U1_48CDSP-littoralis_Contig87 124768..125004 -
1680791742.525685-CDS-P-littoralis_Contig87:126201..1262821680791742.525685-CDS-P-littoralis_Contig87:126201..126282Pylaiella littoralis U1_48CDSP-littoralis_Contig87 126202..126282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.67.1prot_P-littoralis_Contig87.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 124768..126282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.67.1

>prot_P-littoralis_Contig87.67.1 ID=prot_P-littoralis_Contig87.67.1|Name=mRNA_P-littoralis_Contig87.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
QTKEGPRGFGAMLEQNFAGMHDIVIPRVGARSPARNNVRQLAKAVEGTSA
EARQALREISNPSEKSVDPSAIMVTLLSHKDFGKHLSTPVMQEMYLQLFA
RYVLK*
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mRNA from alignment at P-littoralis_Contig87:124768..126282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.67.1 ID=mRNA_P-littoralis_Contig87.67.1|Name=mRNA_P-littoralis_Contig87.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-littoralis_Contig87:124768..126282- (Pylaiella littoralis U1_48)
CAGACCAAGGAAGGGCCGAGGGGCTTCGGCGCAATGCTTGAGCAGAATTT
TGCAGGGATGCATGACATCGTTATCCCCCGTGTGAGAGAGACCGCTTTCA
TCCGAGAGGCTTTGGAGGGAGGAGTGGAACGCATGGCTCAATGAATGAGG
GAACGCAGATATATCAAACACGACTCTTTGCCATCGGTGGTCATCCATCG
GTGGTCATCCCGCGTACGACCAATATTGCAGCAAATGGTGTACCGGAAGG
AGCCTTAATTCTCAATGGGAACCTCAGGCTGAAAGCGGCGAAACTGGTGT
TTGGCGAAGATTTCAATATGTCTTTCGCCGTTTACTACGACTTTGAAAAA
CCATGTGACCGGAAAGCAGCGGCCTAGAAATGCTTCACTTTGGCTGTTTT
TCAGTAAGACCTACCGGTACTCAGCCGGAATAAACGTATGTCAATATCTC
CTGAAAGTGAGGTTCACCACCGTTAGCCCTTCGGGTATACAAAACTCGTC
GACGTTAAACATTACCGCCGTATGAATCCTGCAAGAAGCATGAAGAAGGG
CTTGTTTTCAATGATGAGGCTTGTTCAGAGAGCGCGAGCACGAATCACGT
ACGTAGGCGTAGTATTGATTCCACGTTACACTGTGGCTGCATATTTCCGG
TATTTTTCACACGAAGCATGCTCCATACTGAAAAAAATACTTGAAGGTCA
GTTTCCCATTCCCAGACGCACCCAGCTTTCAACCAGCGCATATGCATATC
ACGCCAGTCCATTCAACAAACCTTAACGTAAATATAAGGGACCCTAATAT
ATAAAAACAACCAGAATTTGCCCGTCGAAACATATCAAGAACTATTAGTT
AGGATCGGTAATCGTCCAGCTGCAAAAGTCGCGATAACCACCGACTCATT
CAACACCTCTATTTGCGCGCTTTCGTACATGACGTGTACAACTAACTATG
CGTCACAGTCCTTCAAAGTGCTGCGGAAGAGCTCCAGCCTCGCACCATCT
ACGACAACTTCTACTTCTGGTGTGATTTCCTGACAGACTTGCCCAAGCCC
GATTACCCGCATGTGAAGCAAGCTTTCGAGAGAGTGAGCGTCTGTTCCGC
AGCCTGGTGTGGTGCATTTACTTCTATCCACATGTCAAGTGCGCCCTTAC
CCGTCACAGTATCGGAACGGCCTCCACTTTGACACCCTGCAACTGAAATT
AATATAAGTCGGCTGACTCGTACATCAATAGCTTAAATCCTGTTTTTATT
TTCCGCTTCGTTCTCCGATAAACACAAGGTTGGTGCTAGGTCCCCCGCAA
GAAACAACGTCAGACAGTTGGCAAAAGCGGTGGAAGGAACATCGGCAGAG
GCTCGCCAAGCTCTACGCGAAATCTCGAACCCCTCGGAGAAATCTGTCGA
TCCCTCTGCCATCATGGTGACGTTACTATCTCACAAAGACTTCGGAAAGC
ACCTGTCGACTCCGGTTATGCAGGAGATGTATCTTCAACTCTTCGCAAGG
TATGTATTAAAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:124768..126282-

>mRNA_P-littoralis_Contig87.67.1 ID=mRNA_P-littoralis_Contig87.67.1|Name=mRNA_P-littoralis_Contig87.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig87:124768..126282- (Pylaiella littoralis U1_48)
CAGACCAAGGAAGGGCCGAGGGGCTTCGGCGCAATGCTTGAGCAGAATTT
TGCAGGGATGCATGACATCGTTATCCCCCGTGTTGGTGCTAGGTCCCCCG
CAAGAAACAACGTCAGACAGTTGGCAAAAGCGGTGGAAGGAACATCGGCA
GAGGCTCGCCAAGCTCTACGCGAAATCTCGAACCCCTCGGAGAAATCTGT
CGATCCCTCTGCCATCATGGTGACGTTACTATCTCACAAAGACTTCGGAA
AGCACCTGTCGACTCCGGTTATGCAGGAGATGTATCTTCAACTCTTCGCA
AGGTATGTATTAAAATGA
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