mRNA_P-littoralis_Contig87.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.65.1
Unique NamemRNA_P-littoralis_Contig87.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:123260..123719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.4379208-UTR-P-littoralis_Contig87:123259..1232751680791742.4379208-UTR-P-littoralis_Contig87:123259..123275Pylaiella littoralis U1_48UTRP-littoralis_Contig87 123260..123275 -
1680791742.4795392-UTR-P-littoralis_Contig87:123668..1237191680791742.4795392-UTR-P-littoralis_Contig87:123668..123719Pylaiella littoralis U1_48UTRP-littoralis_Contig87 123669..123719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.4523742-CDS-P-littoralis_Contig87:123275..1233411680791742.4523742-CDS-P-littoralis_Contig87:123275..123341Pylaiella littoralis U1_48CDSP-littoralis_Contig87 123276..123341 -
1680791742.4623132-CDS-P-littoralis_Contig87:123500..1236681680791742.4623132-CDS-P-littoralis_Contig87:123500..123668Pylaiella littoralis U1_48CDSP-littoralis_Contig87 123501..123668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.65.1prot_P-littoralis_Contig87.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 123276..123668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.65.1

>prot_P-littoralis_Contig87.65.1 ID=prot_P-littoralis_Contig87.65.1|Name=mRNA_P-littoralis_Contig87.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MTTIRAEAQIQVDIQTTMIRTATGSLVKMTARMAPVVLVLAYQMSFVTHA
RHQPLKLPLRSLQHDAHRRRLRCIGEL*
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mRNA from alignment at P-littoralis_Contig87:123260..123719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.65.1 ID=mRNA_P-littoralis_Contig87.65.1|Name=mRNA_P-littoralis_Contig87.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=460bp|location=Sequence derived from alignment at P-littoralis_Contig87:123260..123719- (Pylaiella littoralis U1_48)
CAGGAGAAGTCTCGGGTGAACCCAACAGCATGGACGCAGACGAACGCCTT
GATGACGACTATCCGGGCGGAAGCACAGATTCAGGTGGATATTCAGACGA
CGATGATTCGGACGGCAACAGGGAGTTTGGTAAAAATGACAGCGCGGATG
GCGCCGGTGGTGCTGGTTCTGGCGTATCAGATGAGCTTTGTGACGCATGC
ACGCCACCAGCCACTCAAGGTACGGGGCCGTACGTACCCCTGATTTTCTT
TCGGTTTGCCGTGGCCGAATTTTCGGTTCGTTTGGGCGACTCCTAGGTAG
CGATGAACAAGGTATGCAAACCAGCCATTTAAAACGAAGCACATGTCTCC
GTTGTTTGTTTTGTTACCTGTCAAGCAGCTACCGTTGCGTAGTTTGCAAC
ATGACGCACACAGGAGGCGGTTGCGGTGCATCGGAGAGCTTTGACCAACG
CGACGACTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:123260..123719-

>mRNA_P-littoralis_Contig87.65.1 ID=mRNA_P-littoralis_Contig87.65.1|Name=mRNA_P-littoralis_Contig87.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig87:123260..123719- (Pylaiella littoralis U1_48)
ATGACGACTATCCGGGCGGAAGCACAGATTCAGGTGGATATTCAGACGAC
GATGATTCGGACGGCAACAGGGAGTTTGGTAAAAATGACAGCGCGGATGG
CGCCGGTGGTGCTGGTTCTGGCGTATCAGATGAGCTTTGTGACGCATGCA
CGCCACCAGCCACTCAAGCTACCGTTGCGTAGTTTGCAACATGACGCACA
CAGGAGGCGGTTGCGGTGCATCGGAGAGCTTTGA
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