mRNA_P-littoralis_Contig87.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.61.1
Unique NamemRNA_P-littoralis_Contig87.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:117028..117784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.3882446-CDS-P-littoralis_Contig87:117027..1172141680791742.3882446-CDS-P-littoralis_Contig87:117027..117214Pylaiella littoralis U1_48CDSP-littoralis_Contig87 117028..117214 +
1680791742.400741-CDS-P-littoralis_Contig87:117695..1177841680791742.400741-CDS-P-littoralis_Contig87:117695..117784Pylaiella littoralis U1_48CDSP-littoralis_Contig87 117696..117784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.61.1prot_P-littoralis_Contig87.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 117028..117784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.61.1

>prot_P-littoralis_Contig87.61.1 ID=prot_P-littoralis_Contig87.61.1|Name=mRNA_P-littoralis_Contig87.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
TSTATYLQEGTLARGVVATTVGRAAMVIPARSPTPYGAITPAARTAAASR
APARAPALLDPTGPAAARRRDERRRRFPAPAAAAIDPVWRT*
back to top

mRNA from alignment at P-littoralis_Contig87:117028..117784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.61.1 ID=mRNA_P-littoralis_Contig87.61.1|Name=mRNA_P-littoralis_Contig87.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=757bp|location=Sequence derived from alignment at P-littoralis_Contig87:117028..117784+ (Pylaiella littoralis U1_48)
ACGAGCACAGCGACGTACCTTCAGGAGGGCACGCTCGCTCGAGGCGTAGT
CGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAGCGAGAAGTCCAA
CACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCGGCAGCGTCTCGA
GCTCCCGCACGAGCGCCAGCTCTGCTAGACCCGACAGGCAAGTGACTCCT
TCGCTAGACACAGTTGCCTCCGGCAACCACGTTGCACTTGCCCGCAACGG
TGCCATGGTAGTTTACGACGGCGCGCAAAATGATAGGCCTCTCTCTTCGC
GTGGGGCAAGAGATCGCCAACAGGACATTGACGCTGACAATTTTAAACAG
CAAGAGAAGCACCACATTTCGGTAACTCGTAAATACCCAAGGACCGAGTT
TAGAAATGTCGAGCAGATTCACCCCCAGCTGCCTTTCCCTGCTTCTGTGA
GCGCTAACAGTAATGCATTGGGACAATTTTTGGATACTACCAAAAAGGCA
ATGGCGGATATTCTCAGCCAAGCTGACCCTTTGCTTCTCTTCGAGAATTC
TTCTGGGTGGGATCGGGGTTGGGATAGACCCATCCAGAAGTGCATCACTA
AAACCATCCCGCCGCGAACTGATGAAACAGCAAATTTGACCTCTGTTGTC
ACCACCCTGTTCGACCAGGTCCGGCAGCGGCTCGACGACGGGATGAGCGG
AGGCGACGCTTTCCAGCACCTGCTGCGGCTGCTATCGATCCAGTTTGGCG
AACATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig87:117028..117784+

>mRNA_P-littoralis_Contig87.61.1 ID=mRNA_P-littoralis_Contig87.61.1|Name=mRNA_P-littoralis_Contig87.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig87:117028..117784+ (Pylaiella littoralis U1_48)
ACGAGCACAGCGACGTACCTTCAGGAGGGCACGCTCGCTCGAGGCGTAGT
CGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAGCGAGAAGTCCAA
CACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCGGCAGCGTCTCGA
GCTCCCGCACGAGCGCCAGCTCTGCTAGACCCGACAGGTCCGGCAGCGGC
TCGACGACGGGATGAGCGGAGGCGACGCTTTCCAGCACCTGCTGCGGCTG
CTATCGATCCAGTTTGGCGAACATGA
back to top