mRNA_P-littoralis_Contig87.32.16 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.32.16
Unique NamemRNA_P-littoralis_Contig87.32.16
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.32.16 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:95478..96143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.3432112-CDS-P-littoralis_Contig87:95477..955611680791742.3432112-CDS-P-littoralis_Contig87:95477..95561Pylaiella littoralis U1_48CDSP-littoralis_Contig87 95478..95561 -
1680791742.3581991-CDS-P-littoralis_Contig87:96059..961431680791742.3581991-CDS-P-littoralis_Contig87:96059..96143Pylaiella littoralis U1_48CDSP-littoralis_Contig87 96060..96143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.32.16prot_P-littoralis_Contig87.32.16Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 95478..96143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.32.16

>prot_P-littoralis_Contig87.32.16 ID=prot_P-littoralis_Contig87.32.16|Name=mRNA_P-littoralis_Contig87.32.16|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
ARLGPLLIGTDPCASQAGDRSCLMKAKQICTFLAHQNPPRHSSFGSTPLD
HPCPF*
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mRNA from alignment at P-littoralis_Contig87:95478..96143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.32.16 ID=mRNA_P-littoralis_Contig87.32.16|Name=mRNA_P-littoralis_Contig87.32.16|organism=Pylaiella littoralis U1_48|type=mRNA|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig87:95478..96143- (Pylaiella littoralis U1_48)
GCGCGCTTGGGTCCGCTGCTGATTGGGACAGATCCTTGTGCTTCTCAGGC
GGGGGATAGGTCTTGTCTGATGAAAGCAAAGCAGGTGAAGTTCCCCCTCT
TCCGGTGTGGTACTATTTCCCAGCGCGGCACTTGTGGCACGATATGCACG
TTATTTCGTTGCCGCTGTACCCAATGCGTCGCACTATGTTGACCTGCTTC
AATGGTGTCGTTGCTCTACACATATCCCATGACTCCTGTCCAACCGTGTT
TTCGTGCAAACTCCAAACTGATACTGTTTCTTTGAACCCCGCATCACCCG
AAGCGACAATCGAATTACAAACGCTTTTACGTTTGAAGCTCTAGTGTGTT
GAAAGGAGACAAATCCTGTTTGTTCACGGAGTGGTGATGCATGGTGGTCT
GCGCGTGTTGGAGGAGTAAAGTGACCGTGAAGCAAGGTGCCTCTTCTGCT
GCGTGATACGGGGCAAGGCCAGAGAGGCGCCGAAGGTCGCGTGTTACGTC
CGCGTGCTCGCTTTAATCTCACCCTGTGATTGTTTTCTCTCAGTTTTTCC
CGCCCCTTTTCCCGCTCCCTTTCTCTCGATAGATATGCACCTTTCTCGCG
CACCAAAATCCCCCCCGACATAGCAGCTTTGGAAGCACGCCACTCGACCA
CCCGTGCCCTTTTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:95478..96143-

>mRNA_P-littoralis_Contig87.32.16 ID=mRNA_P-littoralis_Contig87.32.16|Name=mRNA_P-littoralis_Contig87.32.16|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig87:95478..96143- (Pylaiella littoralis U1_48)
GCGCGCTTGGGTCCGCTGCTGATTGGGACAGATCCTTGTGCTTCTCAGGC
GGGGGATAGGTCTTGTCTGATGAAAGCAAAGCAGATATGCACCTTTCTCG
CGCACCAAAATCCCCCCCGACATAGCAGCTTTGGAAGCACGCCACTCGAC
CACCCGTGCCCTTTTTAG
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