mRNA_P-littoralis_Contig120.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.74.1
Unique NamemRNA_P-littoralis_Contig120.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:423506..424213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.655584-CDS-P-littoralis_Contig120:423505..4236371680789515.655584-CDS-P-littoralis_Contig120:423505..423637Pylaiella littoralis U1_48CDSP-littoralis_Contig120 423506..423637 +
1680789515.6688411-CDS-P-littoralis_Contig120:424039..4242131680789515.6688411-CDS-P-littoralis_Contig120:424039..424213Pylaiella littoralis U1_48CDSP-littoralis_Contig120 424040..424213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.74.1prot_P-littoralis_Contig120.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 423506..424213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.74.1

>prot_P-littoralis_Contig120.74.1 ID=prot_P-littoralis_Contig120.74.1|Name=mRNA_P-littoralis_Contig120.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MRFTKCDICTLANEALDVERRKGGSAWLSPEMAIIKTHLNDHYEDVKASR
RAYMTAKMLACTDPLALLCIAIDGADQSAFATPYFCQESKETVKGWKLKM
KL
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mRNA from alignment at P-littoralis_Contig120:423506..424213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.74.1 ID=mRNA_P-littoralis_Contig120.74.1|Name=mRNA_P-littoralis_Contig120.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig120:423506..424213+ (Pylaiella littoralis U1_48)
ATGCGTTTTACAAAATGCGACATTTGTACTCTAGCTAACGAGGCTCTAGA
TGTTGAGCGCAGAAAGGGCGGGAGTGCTTGGTTATCTCCAGAAATGGCCA
TCATCAAGACGCACCTGAATGACCACTATGAGGTCAGTGTGGTGACAACA
TATATAAGGTAGTATTCATGGACCGTCGTTTCAACTGTCCTCCGCCCCCC
TACCTGTTACGACCCATTCCCTGCAACCCGCCCCTCATCCCTTCCGCGGC
GCGTATTCATGTCGCACTTGTTCAAGGGGCGGTTGCATGCATTCGTTCAT
ATATGAATCCGCAGATGTTGGAGGTGATTCCTCCCCACGAAAGGATTATA
CCCTCTGGGATAGAAACGTTTTCCAACAACAAAATAGAGGATAGTGTGAG
CGTCGTTTGTACTCGTTCTTCCCAGCCAGCCATGCGATTGCACGGTCGCA
GGAGGAATTTACCAACAGTCTTTGTGTGTCCGCCGCTCCCCTACGTATAC
TCTCGCTCCAATGCCGTTTTGCTGATTTCTCCAGGATGTGAAAGCCTCAA
GACGCGCGTATATGACGGCGAAGATGCTTGCTTGTACGGACCCCCTGGCG
CTTCTATGCATTGCCATCGACGGTGCCGATCAGTCCGCCTTTGCGACGCC
GTACTTCTGCCAGGAGAGCAAGGAAACGGTGAAGGGATGGAAGCTCAAAA
TGAAGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:423506..424213+

>mRNA_P-littoralis_Contig120.74.1 ID=mRNA_P-littoralis_Contig120.74.1|Name=mRNA_P-littoralis_Contig120.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig120:423506..424213+ (Pylaiella littoralis U1_48)
ATGCGTTTTACAAAATGCGACATTTGTACTCTAGCTAACGAGGCTCTAGA
TGTTGAGCGCAGAAAGGGCGGGAGTGCTTGGTTATCTCCAGAAATGGCCA
TCATCAAGACGCACCTGAATGACCACTATGAGGATGTGAAAGCCTCAAGA
CGCGCGTATATGACGGCGAAGATGCTTGCTTGTACGGACCCCCTGGCGCT
TCTATGCATTGCCATCGACGGTGCCGATCAGTCCGCCTTTGCGACGCCGT
ACTTCTGCCAGGAGAGCAAGGAAACGGTGAAGGGATGGAAGCTCAAAATG
AAGTTG
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