mRNA_P-littoralis_Contig869.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig869.39.1
Unique NamemRNA_P-littoralis_Contig869.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig869.39.1 vs. uniprot
Match: D7G528_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G528_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.880e-8
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   22 KTNFDKEEKDSAKLTGEGTANPEERSEMEDDSEKWNLFMAIKMQKSAHETRVGRAATTREQQREARGTR 228
            K N   EEK+ AK TGEG  + ++R ++ED+S+K NL MAIK+ +SAHE R  RA+ ++E Q  A  TR
Sbjct:    2 KKNHKDEEKNDAKKTGEGAMDDDQRDDLEDNSDKQNLIMAIKLMESAHEQRCHRASISKEDQSAATNTR 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig869.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G528_ECTSI3.880e-849.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig869contigP-littoralis_Contig869:64872..65991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008260.1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.2477336-CDS-P-littoralis_Contig869:64872..650791680791742.2477336-CDS-P-littoralis_Contig869:64872..65079Pylaiella littoralis U1_48CDSP-littoralis_Contig869 64873..65079 -
1680791742.2634444-CDS-P-littoralis_Contig869:65871..659911680791742.2634444-CDS-P-littoralis_Contig869:65871..65991Pylaiella littoralis U1_48CDSP-littoralis_Contig869 65872..65991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig869.39.1prot_P-littoralis_Contig869.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig869 64873..65991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig869.39.1

>prot_P-littoralis_Contig869.39.1 ID=prot_P-littoralis_Contig869.39.1|Name=mRNA_P-littoralis_Contig869.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
KNLFSRYKTNFDKEEKDSAKLTGEGTANPEERSEMEDDSEKWNLFMAIKM
QKSAHETRVGRAATTREQQREARGTRDIAALSMSVGTGGAAASGRRGDAR
GGASDAGPA
back to top

mRNA from alignment at P-littoralis_Contig869:64872..65991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig869.39.1 ID=mRNA_P-littoralis_Contig869.39.1|Name=mRNA_P-littoralis_Contig869.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1120bp|location=Sequence derived from alignment at P-littoralis_Contig869:64872..65991- (Pylaiella littoralis U1_48)
AAGAATCTTTTCTCGCGCTACAAGACCAACTTCGACAAAGAGGAGAAAGA
CTCGGCGAAGTTAACCGGAGAGGGGACCGCGAATCCAGAGGAACGCAGCG
AGATGGAAGACGATTCCGAGGTGACTGACTGCGAATATTAACCTGATGCT
GTAGCATTTCCTTTGTACCAGTAGCGGGCTCCCGGGGGCCTGCGTGCTCA
TCCTCGTGCAAGCCCTTCGCCGTGTCGGGTGCATTAGGCTTTTGTTTCTT
AAAGTCATTTTCTGTTACTGAAACGTTTGTCTTGCGTGAACCAATTGCCA
TTAAAAATTGGAACACACGGCCCTACATCGCGCTTCTTGTCGAGGGCAAA
AACATGCCAAAAACCCAAAATAATTGTTAACTTTGTAACTTGGTGAACAA
ATTGTTGAACTAAGGGCACAATTCATTTGGAAGGGCACGTCGTAGTCTTG
TCCCACTCTTATCTGAAAACCCGCATTTGGCTTCGCCCTCAAAGTGGAAT
GTCCCACACTGAAGTCGGTATGGCCGAACTTGCGGAACGAGTGTAGCAAT
CAAGGAGTTGTCCCCGACGCACCCGGACTGAAAAATGAAGAGGAAGCTTT
TAATTTAGAGTTAGTCGACCCACAAGATGATAAGCAACATCAGGGAATTG
CGCGCTAGAGATCGTCCAGCCAATGCCGTGTTGTGTTTCTTGTTGGATCA
TTCACAACGCCAACAACGTACATTGGCCTCTGGTGAACATGGCCACCCCT
ATTGTAGCCACCAATTCGAAGTGAACGTGTCTGGACATAAAGGAATAATC
GTACAAACAGGTCGACATCACGCATAATCGCCGACGTGTCGAAATGTATG
ATATGTTCACCTGGAATTAATCTCAAAACACTTTTTGTTTTTTACCACCC
CGATCTGTGCAGAAATGGAACCTCTTCATGGCCATAAAAATGCAAAAGTC
GGCTCATGAGACTCGTGTAGGGAGAGCGGCAACCACGAGGGAACAGCAGA
GGGAGGCACGCGGTACGAGGGACATCGCAGCGCTGTCGATGTCGGTTGGC
ACTGGTGGTGCTGCGGCCAGTGGACGTCGCGGTGACGCGCGTGGAGGTGC
GAGTGATGCAGGTCCTGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig869:64872..65991-

>mRNA_P-littoralis_Contig869.39.1 ID=mRNA_P-littoralis_Contig869.39.1|Name=mRNA_P-littoralis_Contig869.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig869:64872..65991- (Pylaiella littoralis U1_48)
AAGAATCTTTTCTCGCGCTACAAGACCAACTTCGACAAAGAGGAGAAAGA
CTCGGCGAAGTTAACCGGAGAGGGGACCGCGAATCCAGAGGAACGCAGCG
AGATGGAAGACGATTCCGAGAAATGGAACCTCTTCATGGCCATAAAAATG
CAAAAGTCGGCTCATGAGACTCGTGTAGGGAGAGCGGCAACCACGAGGGA
ACAGCAGAGGGAGGCACGCGGTACGAGGGACATCGCAGCGCTGTCGATGT
CGGTTGGCACTGGTGGTGCTGCGGCCAGTGGACGTCGCGGTGACGCGCGT
GGAGGTGCGAGTGATGCAGGTCCTGCA
back to top