mRNA_P-littoralis_Contig869.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig869.28.1
Unique NamemRNA_P-littoralis_Contig869.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 6.400e-29
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:  157 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVTGILRDG 522
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE +V  LM+ I+ L+ GC+A +    G   T+T ++R G
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAV--GDKQTITALVRMG 124
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.290e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:  491 VSL*QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
            V + Q   VMG ALG+ HKG+HI  N+   G V+N N  E+K+KQ K  + S+SGRDN +H+WRT ND +A++AL +GV W A  +  
Sbjct:  155 VQVKQVTRVMGVALGSIHKGLHIAPNVVVNGVVTNCNVGEAKNKQQKASAPSASGRDNAEHMWRTTNDSLAMQALADGVEWTASGWTG 242
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.850e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:  259 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WEEEVGGLMETIQHLEKGCRARMKTQDGHSVT 498
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE ++  LME I+ L+ GC+  +   D  +VT
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.140e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  503 QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
            QA  VMG ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND +A+KAL + + W A  +  
Sbjct:  287 QATRVMGVALGTIHKGLHIARNVVVNGVVTNCNVGEAKNKELKASAPSASGRDNARHIWRATNDSLAIKALADAIEWTASGWTG 370
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.160e-15
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 2 
Query:  503 QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAA 739
            QA  V+G ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND +A+KAL +G+ W A
Sbjct:  208 QATRVIGVALGTIHKGLHITRNVVVNGVVTNCNVGEAKNKELKASAPSASGRDNARHIWRATNDSLAIKALADGIEWTA 286
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.070e-15
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:  515 VMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
            VMG ALG+ HKG+HI  N+   G V+N N  E+K+KQ K  + S+SGRDN +H+W T ND +A++AL +GV W A  +  
Sbjct:  280 VMGVALGSIHKGLHIARNVVVNGVVTNCNVGEAKNKQQKASAPSASGRDNAEHMWHTTNDSLAMQALADGVEWTASGWTG 359
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.170e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  503 QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
            QA  V+G ALGT HKG+HI  N+   G V+N N  E+K+K+ K  + S+SGRDN +HIWR  ND  A+KAL +G+ W    +  
Sbjct:  139 QATRVIGVALGTIHKGLHIARNVVVNGDVTNCNVEEAKNKELKASAPSASGRDNARHIWRATNDSFAIKALADGIEWTTSGWTG 222
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.180e-11
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  569 IRDLGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
             R  GAV N N  ESKHK+ KK + S+SGRDN  HI+RT+ND  ALKALC+GV W+AK  V 
Sbjct:   27 FRTKGAVGNANFGESKHKEVKKSATSASGRDNPVHIFRTWNDTQALKALCDGVRWSAKGRVG 88
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BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.620e-11
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:  503 QAFCVMGEALGTFHKGMHIPDNIRDLGAVSNTNPAESKHKQHKKGSASSSGR--DNMKHIWRTYNDGVALKALCEGVVWAAKDYVN 754
            QA  V G AL + HKG+HI D+IR+LGAV NTN  ES HK  KK    +  R  +N  HI + +ND  ALK+L + V W A  + N
Sbjct:   25 QASRVAGLALNSIHKGLHIADDIRNLGAVGNTNAGESNHKDLKKSRRDACLRAGNNEVHIIKNWNDNQALKSLSDSVTWDACGFEN 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig869.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FZI4_ECTSI6.400e-2952.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSA9_ECTSI2.290e-1647.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE2.850e-1649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW9_ECTSI3.140e-1548.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K975_9PHAE3.160e-1551.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Y8_ECTSI6.070e-1548.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR91_9PHAE1.170e-1447.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK1_9PHAE4.180e-1159.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LF20_9PHAE7.620e-1147.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig869contigP-littoralis_Contig869:33932..37407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size755
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.1341722-UTR-P-littoralis_Contig869:33931..339911680791742.1341722-UTR-P-littoralis_Contig869:33931..33991Pylaiella littoralis U1_48UTRP-littoralis_Contig869 33932..33991 +
1680791742.185305-UTR-P-littoralis_Contig869:37267..374071680791742.185305-UTR-P-littoralis_Contig869:37267..37407Pylaiella littoralis U1_48UTRP-littoralis_Contig869 37268..37407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.144641-CDS-P-littoralis_Contig869:33991..344331680791742.144641-CDS-P-littoralis_Contig869:33991..34433Pylaiella littoralis U1_48CDSP-littoralis_Contig869 33992..34433 +
1680791742.1552162-CDS-P-littoralis_Contig869:36676..367551680791742.1552162-CDS-P-littoralis_Contig869:36676..36755Pylaiella littoralis U1_48CDSP-littoralis_Contig869 36677..36755 +
1680791742.1709344-CDS-P-littoralis_Contig869:37233..372671680791742.1709344-CDS-P-littoralis_Contig869:37233..37267Pylaiella littoralis U1_48CDSP-littoralis_Contig869 37234..37267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig869.28.1prot_P-littoralis_Contig869.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig869 33992..37267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig869.28.1

>prot_P-littoralis_Contig869.28.1 ID=prot_P-littoralis_Contig869.28.1|Name=mRNA_P-littoralis_Contig869.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MTSQELNEQVPTFLGEGFVTFLTNPRRVKEQRPWRKEGVDGLYFDRDADS
YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRR
LRSWSLVCAGSKGRWEEEVGGLMETIQHLEKGCRARMKTQDGHSVTVTGI
LRDGRSPRHLPQGNAHSGQHSGSRCRVEHQPSRI*
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mRNA from alignment at P-littoralis_Contig869:33932..37407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig869.28.1 ID=mRNA_P-littoralis_Contig869.28.1|Name=mRNA_P-littoralis_Contig869.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3476bp|location=Sequence derived from alignment at P-littoralis_Contig869:33932..37407+ (Pylaiella littoralis U1_48)
GTCAAGGTGCAAGTGGATGCCCTCGATGCCCCCTGCCTCGTCTTACCGGC
GGGTACCGATATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCC
TCGGTGAAGGGTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAA
CAACGACCGTGGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGA
CGCCGATAGCTACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGA
TTGCTGTCTCCAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTC
TACAACGTCAACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCT
CCTACGACGCCTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGC
GTTGGGAGGAGGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAG
AAAGGCTGTCGCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGT
GAGTGTCTGTTTGCATTTTCTTTTCTTTACACTTATTTATTAAGTTATTG
CCCCGCGTGCCGCAAACGTAATTTCATTATTTACCTGGTTTTGTTCCCCG
GCCTGATGCCCCATGCCTCTCCACTGTCTGCAACTTTATCTTTTTTGTTG
GTGATGTTTCTTTGTTAAATTTAGTGTTTTCGTCCCTACCATCTATTTCG
ACAGCGTCTCGTCATATTCAGTGCGATCGGGTGTTTTCCTGGTACGTCAC
TGCTGTGTTGATAGCCAGTGACCGCTACATACCTCAGAGGTAACGGTGTT
GAATAACCCTAGAGAATATCGACAACCGCTGCGTTATTGCTTTGAGAGTA
TGCATGTCATGCGGACTCACTTCTTGTTGTTTTCATTCCCCTCTCATTTA
GGTGTTTGTGCGCATGGGCTTATTGACGGCAATGCTCGACACCCCTTATC
ACAGTGCGTGGTCCAACACGAAGGGCTCAAACTCCAAAACCAAGAAGCCG
TGTTCGACGTGCGAGGTCACCCAGGAGGAGCTCTCTGACCACCAGTACAA
CATCGGCGCCAACCTTCGCACGCAGGATGGCATCGACGACTCTCTGTTGT
ACGTCAAAGCCGGGGACACAGCCGCGGACCAGGCTCGCCGATCTCGTGAG
AGGGGTAGTGGTTCCGGACGTGGATAACCCGCTGAAGAAGCTGGTGTTCG
ACCGAGTTCGGGGCATCGGAGTTGACATACTGCACCAAGACTCCCTTGTG
AGTGAAGACGTATTTTAACACTCAATATTGCGGTGACAACTTCAACAGGC
GCATGCTTTTGCTTGGTGGACTTAAAAGTACTTGATTCCGACTCTGATTC
GTGGTGGTGATGTGTGATGTGTGATGTTTGTAGTTTTCCTCGTCAGCACG
GCTCGGCACCATAAATTTTATGCGACCGGTGACTTCACTGACCATGGTCT
CCTTTCCCATTTGTTTTCCCGCCCAACCACCATTGGTTTCAAGAACAAGG
CAAAGCGCATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGATCG
GCGCTCGTTTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACGC
GGAGCCGCTGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACTG
GAAACCAGATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCCT
ATTTTCGCCAACCACATGTCCATGGTAAGCAAAGAATCCGTCGATTTTTT
GGGCTTCAGGTCAACGCCCAAGTTTCATACACCCTTTGTATTTTACTATA
CCTTTTGAGTTTCTTCCGGGGGGGGGGGGGGGAGGCGATATTGACGACGT
GAAGCTGGGGGGGGGGAGGTGGCGGAGGGGGAGGAGGCGGTATTGACGAC
GTGAAGCTCGGGGACATATTATGTATTCAGCGCAATACCTACCAATGGTC
GGCGGTGTTTGTTCTTTTTTTTTTGCACACACGGCATGATTCTATTGAGT
GTACAAAATGTATTCGCTTTCCCGGGCTGCCCGATATTTTTTTATCCCCC
CCCCTCCCTCTCGAGTTACAACGCAGTATCACGTTTTTCATGGGGCAACT
CTACGATATTCAACAATCACATTCTGCTGGAATGCGAGAGGGATCAGGTT
AGAAAATAAATGTACAGGGTGTGGCCGCGGGTTATGGTTATCGAAGGTTG
ACGAGAGGATATTTTTGTTTTTGGCCTGGAAGTATTCTCAGTCGTGGCAA
TCAGAGTAACGTTTGTTCCCACCGCGGTGTTGCAACCAGGCCCGCCTCCC
GCCGCTCGGATACACGATGTATACCCACCTCTTACTTGCTCCAAACACGA
TACGATGCATAGCTTGTGGTCACCCTCTTTGGTTATGCTCATGCGCGAGT
TGTCACCCCCCGGCAAAAACCGTAGATAAAAGAAAGATTGCGTTTTTCAA
GAGTCGGAGAAAAATCCGGCAGTAAGCTTCTCCCTGCTCTCAGCAAAACC
CCTCAGTGTATCCCCTGGACCTCTAACTCCCGTAGTCCTTTTCTCTGTCG
TCGATGTGGGCCAAATGGTTGTTCAGTGGGAAATTGGCACCGTATAATAA
ACCATTGCGTCCATTGTATCCCAGCAATATGGTTTGTGGTACCACTCGGG
ACCAACCCCGTATTCTCGCTCACAACATGTTATTTTTAGAACAACACGAG
CCAACGCTGCGACGGCATACTCTCTTCGTGGTTCTATAGGTGGAGCAGGC
ATTTTGCGTGATGGGAGAAGCCCTAGGCACCTTCCACAAGGGAATGCACA
TTCCGGACAACATTCGGGATCTAGGTAGGTCGCATTGTCCCACACAGATA
TTTTAGGGGTTCCAGGCGACGTTATTTCAGTAATTGCAGGCCCGCGTAAT
TTGTGGCTGTGCTACTATTCAGCCTCGTATTAGAGACCAACTGGTATTTC
ACAGTAAGTAGGCACCATAGGCCAATTGACCCCCCCCCCCGGAGCAATGT
AGGATACGCTTTTCACAGAAATAGCACTCTCGCTCCTAGAGGTGGCCCGG
GGTTCTCTTTATTTTGTTCGAAGGTGTCACCGGAGCTGGGATGCAAATAT
CCCAATCCGCTACAACCATTGTAGAGTATGTTTGGAACGGCCAAGGTACT
CGTGATTTCATTAGTATTTTTGGTGCGTTACGCTGCATTTTCGCACTGAC
CCTCCAAAACCCAAACATTTCGTTCCTGTATTTTTTTCAGGCCTTCTTTA
ATTTTGTTCTAACTTTGTGTGCTCTACCGCCGACTATTATTCTCAATGCC
AGGTGCCGTGTCGAACACCAACCCAGCCGAATCTAAGCACAAGCAACACA
AGAAAGGGTCGGCATCATCTAGCGGCCGGGACAACATGAAGCACATATGG
AGAACGTACAACGATGGCGTCGCGCTGAAGGCGCTGTGCGAAGGAGTGGT
GTGGGCGGCTAAGGACTACGTAAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig869:33932..37407+

>mRNA_P-littoralis_Contig869.28.1 ID=mRNA_P-littoralis_Contig869.28.1|Name=mRNA_P-littoralis_Contig869.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig869:33932..37407+ (Pylaiella littoralis U1_48)
ATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCCTCGGTGAAGG
GTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAACAACGACCGT
GGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGACGCCGATAGC
TACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGATTGCTGTCTC
CAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTCTACAACGTCA
ACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCTCCTACGACGC
CTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGCGTTGGGAGGA
GGAGGTCGGCGGACTAATGGAAACCATTCAGCACCTCGAGAAAGGCTGTC
GCGCAAGAATGAAGACTCAAGACGGGCACAGTGTCACTGTGACAGGCATT
TTGCGTGATGGGAGAAGCCCTAGGCACCTTCCACAAGGGAATGCACATTC
CGGACAACATTCGGGATCTAGGTGCCGTGTCGAACACCAACCCAGCCGAA
TCTAA
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