mRNA_P-littoralis_Contig868.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig868.23.1
Unique NamemRNA_P-littoralis_Contig868.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig868.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig868contigP-littoralis_Contig868:93636..95819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size957
Hectar predicted targeting categoryother localisation
Exons3
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.3637455-UTR-P-littoralis_Contig868:93635..939321680791741.3637455-UTR-P-littoralis_Contig868:93635..93932Pylaiella littoralis U1_48UTRP-littoralis_Contig868 93636..93932 -
1680791741.3810165-UTR-P-littoralis_Contig868:94032..940661680791741.3810165-UTR-P-littoralis_Contig868:94032..94066Pylaiella littoralis U1_48UTRP-littoralis_Contig868 94033..94066 -
1680791741.4069445-UTR-P-littoralis_Contig868:94558..945651680791741.4069445-UTR-P-littoralis_Contig868:94558..94565Pylaiella littoralis U1_48UTRP-littoralis_Contig868 94559..94565 -
1680791741.417959-UTR-P-littoralis_Contig868:95692..958191680791741.417959-UTR-P-littoralis_Contig868:95692..95819Pylaiella littoralis U1_48UTRP-littoralis_Contig868 95693..95819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791741.3955765-CDS-P-littoralis_Contig868:94066..945581680791741.3955765-CDS-P-littoralis_Contig868:94066..94558Pylaiella littoralis U1_48CDSP-littoralis_Contig868 94067..94558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig868.23.1prot_P-littoralis_Contig868.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig868 94067..94558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig868.23.1

>prot_P-littoralis_Contig868.23.1 ID=prot_P-littoralis_Contig868.23.1|Name=mRNA_P-littoralis_Contig868.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MELWEIGDSNVIEGSCGFSAALAACAIHHGMNPDAVHTALTSCPEEVGNL
IERCHEAVVTVFDLDHSAGSGHGMDGGFWVFEGLEEMDTSWESVFEGGNI
LTPAQWVEVLRRGGWADDRAIRVMGELLGFPEIQIVKEIFKTGKKRGKPR
ELVDFFTPFWSRG*
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mRNA from alignment at P-littoralis_Contig868:93636..95819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig868.23.1 ID=mRNA_P-littoralis_Contig868.23.1|Name=mRNA_P-littoralis_Contig868.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2184bp|location=Sequence derived from alignment at P-littoralis_Contig868:93636..95819- (Pylaiella littoralis U1_48)
GTGAATCTGCGATGCGGGTGTGCCTGACTCGCTTGTGTTGTGCTGGGCAC
TGAACTGCTGGACTGCTGGTGGATTGCTGGACTGCTGGACTGCTGGGCTG
CTGGGCTGCTGGCACTACTGCTTCAATGTAAGTGTGTTGCCCATCACAGC
ACCCAGTTGATACAACGCTGAGAATTATGAAGGAAAGCACAGCACCCACG
CAACAGCACACAGCAGCAGAAGAGCTACAAGGCAATTTTGAATTCAAACT
AACTGCTGTTGTTGTTCCCGCCACGTCACACATGTTCTTCTGGCACTGCC
CCCTGCTGTGCTACAGCAGTAGGGCATTGATGCTGCCTGTGCTATCCGTG
CTATATAATAAGTAATCGGCGTTTTCAGAACAGGACTGGTGGGTATCAGG
TATACCTGGTATGGTGTTTTGGGGTGCTCTTCGAAAATCAGAAATGAGAT
AAGATAGCTAGGAACTGACCAGTTCAGAACTATGTCATGTTTTATCGAAG
TTGACATGGCGTCCCTGGCAGTTTCTCTGCACCAGTCCAACATGACGCTG
TCTGGTGTCGCACGAAAGAGTGCTGTTGTTGCCGAAACTTCGGGGGAATA
TGTCGCCGTGCTGATGGGTTGCCATCTCCACAGCAGTACAGGACTTGAAC
CAGTCGAATTCCGGCACAACAGAACAATTGTATCATTATAATACCTGGTA
CATAGTATTTAATGATACACAATGACTGCTGTCGTGTATGTAGAACATGT
CTTCTCGCTGTGCTGTAGGGTTGCCATCTCCACAGCAGTACAGGATTCCA
AGCCGGCAAACAACGGCAAGCAATGTTATCATATCATACGGCAGGACACG
TGTGTTTCTTGAAATTCGTCCATCATCCATCCAATATCCAGCCATCTGAT
TTTCGTTGCTGAACCTTGGGATATGATATCTTCTCGCTGCGTGTAGGGTC
GCCGTCTCCACAGCAGTACCGGACTTGAAACACTGTAGTCCAACGATGGC
AGAACAGAACAATCGTTTGATATATAGTATAAGGTATAATATATGTATTT
GGTGACTCTGACATGACGTCTCGGCGCCATTCCTGTGCCCGTATTCCCTC
AAAACAAACTCGCTCACAGCCCCCCTCACCCACGTACAAAAAACACGAGC
TGACCCCCTCGTGGCTCACCCGCTCGCTCTGCGATGATTTCGTCGTCCCC
CGATGAATATGATGAGTTCAATATTTGTCGTTCCTTCGTTTCCCATGCTG
CCAGGTAAACGATGGAGCTTTGGGAAATTGGAGACAGCAATGTCATAGAG
GGCTCATGCGGGTTTTCAGCTGCTCTTGCAGCCTGTGCAATTCATCACGG
GATGAATCCCGACGCCGTACACACGGCGCTCACATCTTGTCCTGAGGAAG
TCGGTAATTTAATCGAGCGATGTCACGAGGCAGTCGTAACAGTGTTTGAT
CTCGATCACTCGGCCGGTTCCGGACATGGTATGGATGGTGGATTTTGGGT
TTTTGAGGGTCTGGAAGAAATGGACACCAGCTGGGAGTCTGTCTTCGAAG
GAGGGAACATCTTAACACCGGCGCAGTGGGTGGAGGTCCTGCGTCGTGGC
GGCTGGGCCGACGACAGAGCTATTCGAGTGATGGGAGAATTGCTTGGATT
CCCAGAAATCCAGATCGTCAAGGAGATCTTCAAGACTGGAAAGAAAAGAG
GCAAACCGCGAGAGCTCGTGGATTTCTTCACACCCTTCTGGTCGAGGGGT
TAACGCCCAATGGATGACCAAAGATCTCGTCCTGCCATGATTTTTCCTGT
CGTCAGGAACATGCCTCCGGTTGCATCAATGACAGCCGACATGCAGGAGA
AGATTGATTCTTTGAAGGCTAGTCTTCACGCTGTAAACGAGAGGCTCTCG
GCGCTGGAGGCGGAGGCCGTGGCACACGACGAGGAAGACTCAGAAAAAGA
AACCGTCCGCAAAGCCGCCAAGATTTTCAAAGCAGTTGCGCATCCGTACG
GCAAGGCTAACAACACGTGGGTGTTCGAACAGGCAGGTAGTAAGAACGGG
TTGGACTGTCCACCCCCCGCCGTCGAGTACGCCAAAAACGTTCCGCCTCT
TCTGGTCACCTTCGTAGACATGTTGATGAACGAGCAGGGGCCCGGATGTG
ATGAGGATGGCGGTTCGGAGTCCGATGATTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig868:93636..95819-

>mRNA_P-littoralis_Contig868.23.1 ID=mRNA_P-littoralis_Contig868.23.1|Name=mRNA_P-littoralis_Contig868.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig868:93636..95819- (Pylaiella littoralis U1_48)
ATGGAGCTTTGGGAAATTGGAGACAGCAATGTCATAGAGGGCTCATGCGG
GTTTTCAGCTGCTCTTGCAGCCTGTGCAATTCATCACGGGATGAATCCCG
ACGCCGTACACACGGCGCTCACATCTTGTCCTGAGGAAGTCGGTAATTTA
ATCGAGCGATGTCACGAGGCAGTCGTAACAGTGTTTGATCTCGATCACTC
GGCCGGTTCCGGACATGGTATGGATGGTGGATTTTGGGTTTTTGAGGGTC
TGGAAGAAATGGACACCAGCTGGGAGTCTGTCTTCGAAGGAGGGAACATC
TTAACACCGGCGCAGTGGGTGGAGGTCCTGCGTCGTGGCGGCTGGGCCGA
CGACAGAGCTATTCGAGTGATGGGAGAATTGCTTGGATTCCCAGAAATCC
AGATCGTCAAGGAGATCTTCAAGACTGGAAAGAAAAGAGGCAAACCGCGA
GAGCTCGTGGATTTCTTCACACCCTTCTGGTCGAGGGGTTAA
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