mRNA_P-littoralis_Contig120.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.70.1
Unique NamemRNA_P-littoralis_Contig120.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.70.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 1.700e-93
Identity = 166/332 (50.00%), Postives = 232/332 (69.88%), Query Frame = 3 
Query:    3 FAPVVSLMKPLSDGESLEDVMPVEGFKSKIIDGKHRVRALELIDGE-KGTATS-INCRVHGVMSPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQN-LTEKQLQNKVKQEYSNQSLSPPAPATLKKWICLSLKITDLGLDAMKDVSYLPGRGPKHPDHKVLDHKRVTLKMLCRERFHDMNPYEQEVYVFRLAKGSITSHKILSEEECGMLDKTAVNVGLEVERLEAIVPRAGWSSDLREGMRKLIATGLCSRYFIHHDGLIRLVETYEKELPEGMDASEAHVAMLRGQLHITTEKLLKEDGQMQTQWKAYEAEKKIIEQ 989
            +AP+V L+ PL   +SL  V+     K ++IDG HRV AL+ ID E K T+   I+ RVH  M  + ERMVAAG NR+SS+VV+TLL+D+VVWYR+VI A+Q+ H G   +T  Q+   +K++++NQS   PA  TLKKWI ++L IT  GL+A++D+SYLPGR P HPD   LD+KRVTLK++ R +F  MN ++QE YV+RLAKG+IT++K L++E+C  LD TA  +  E+ER+E+I+PRA WS   + GMRK++  GL SRY+ H  GL   VE Y+K LPE M+ S+ H+ ML  + H +T  LL++D +M+ +W+AY   KK IEQ
Sbjct:   64 YAPIVCLVNPLPQEQSLGTVLAAGDIKLRVIDGNHRVAALQQIDEETKPTSPRVISVRVHQPMPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFANQSQKAPANQTLKKWIGIALNITPYGLEALRDLSYLPGREPNHPDLTSLDYKRVTLKLVERTKFQGMNKWQQEAYVYRLAKGAITTNKQLNDEQCKTLDSTAETIAQEIERVESIIPRAEWSEGFKRGMRKVMIGGLQSRYYGHLIGLQTNVEAYKKTLPEKMEVSKDHINMLLREPHAST--LLQDDPEMKPKWEAYAKGKKDIEQ 393
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE1.700e-9350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:408360..411536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size991
Hectar predicted targeting categoryother localisation
Exons6
Cds size966
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.70.1prot_P-littoralis_Contig120.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 408360..411513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.5630412-CDS-P-littoralis_Contig120:408359..4084311680789515.5630412-CDS-P-littoralis_Contig120:408359..408431Pylaiella littoralis U1_48CDSP-littoralis_Contig120 408360..408431 -
1680789515.572218-CDS-P-littoralis_Contig120:408736..4089051680789515.572218-CDS-P-littoralis_Contig120:408736..408905Pylaiella littoralis U1_48CDSP-littoralis_Contig120 408737..408905 -
1680789515.5812218-CDS-P-littoralis_Contig120:409160..4092981680789515.5812218-CDS-P-littoralis_Contig120:409160..409298Pylaiella littoralis U1_48CDSP-littoralis_Contig120 409161..409298 -
1680789515.5969114-CDS-P-littoralis_Contig120:409577..4098161680789515.5969114-CDS-P-littoralis_Contig120:409577..409816Pylaiella littoralis U1_48CDSP-littoralis_Contig120 409578..409816 -
1680789515.605235-CDS-P-littoralis_Contig120:410450..4106051680789515.605235-CDS-P-littoralis_Contig120:410450..410605Pylaiella littoralis U1_48CDSP-littoralis_Contig120 410451..410605 -
1680789515.6136117-CDS-P-littoralis_Contig120:411320..4115131680789515.6136117-CDS-P-littoralis_Contig120:411320..411513Pylaiella littoralis U1_48CDSP-littoralis_Contig120 411321..411513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.6222076-UTR-P-littoralis_Contig120:411513..4115361680789515.6222076-UTR-P-littoralis_Contig120:411513..411536Pylaiella littoralis U1_48UTRP-littoralis_Contig120 411514..411536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.70.1

>prot_P-littoralis_Contig120.70.1 ID=prot_P-littoralis_Contig120.70.1|Name=mRNA_P-littoralis_Contig120.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=322bp
MKPLSDGESLEDVMPVEGFKSKIIDGKHRVRALELIDGEKGTATSINCRV
HGVMSPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQN
LTEKQLQNKVKQEYSNQSLSPPAPATLKKWICLSLKITDLGLDAMKDVSY
LPGRGPKHPDHKVLDHKRVTLKMLCRERFHDMNPYEQEVYVFRLAKGSIT
SHKILSEEECGMLDKTAVNVGLEVERLEAIVPRAGWSSDLREGMRKLIAT
GLCSRYFIHHDGLIRLVETYEKELPEGMDASEAHVAMLRGQLHITTEKLL
KEDGQMQTQWKAYEAEKKIIEQ
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mRNA from alignment at P-littoralis_Contig120:408360..411536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.70.1 ID=mRNA_P-littoralis_Contig120.70.1|Name=mRNA_P-littoralis_Contig120.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3177bp|location=Sequence derived from alignment at P-littoralis_Contig120:408360..411536- (Pylaiella littoralis U1_48)
AGTTTGCTCCCGTTGTTAGCCTCATGAAGCCTCTTAGCGATGGCGAGTCT
CTTGAAGATGTAATGCCTGTCGAAGGCTTCAAGTCGAAAATTATCGATGG
AAAGCATCGAGTTAGAGCGTTGGAGCTGATTGATGGAGAGAAGGGAACCG
CCACCTCCATTAACTGCCGTGTCCACGGAGTCATGTCACCTTCCGCGGAG
CGCATGGTCGCAGCAGGTGAAGCGTTCTGCAAATGTGCTGTCATTCATTG
CAGATGCCAACCTACACCGTCGAGTACATGCGTGCTTGGGTTGACTTTGT
TTGGCAAACGAAATCCGTGCTCCTGTTGTTGCTCCAAGGTCGTTCTGAAA
TTTTCCGATGCAGTACGTGCATATCTCCAGATAGATGAGGATCTATCATA
CTGCTGTAGATCACTGGCGGCGTACATACGATAGCACACAAATGATGCTG
GCCCTTCATTCGAAGTATACACACCTACAGGTTGTGTCCCGTCTCACAGT
CACCTGTCTGTCTGTAAGTATTTGTCCGACTCGTCAGATAGTATCGTACA
CCGTTCGTTGTTGTGCCCACAAGATAATGTTTTGACACACAACGTCGCGG
CCGAAGTTTTGTGATACTTCGTACAACACGAAATTTTCCAGTCAGACCCT
GTTGTTGTGTTGTTTCCTGAATACGTAGTACAAGCCAAAAATCACGAAGT
ACAACATTAGAACCCGCTGCCAAAGAACAGGCCCATCCAGCATGCCTCCG
ATGAGAGATGTTTGGTTGCTTGATTCTCACATTAGCTCATCGAAATGTGC
TCCTGCCGGAAGCTACCCTAATTTTTGTATTACGATAGTGATATTTCTGC
TCTTCCCAAAACTTTCACTCTGTGTCTGACAGACATCATATGTTTGATAC
TTGCCTCTGTTGTTGCTATTGTGTTGCCCAGGGTTCAACAGGGTCTCTTC
GAGTGTCGTGGAGACTTTGCTCATTGACGACGTCGTCTGGTATAGAGCTG
TTATTGCTGCGATTCAGCAAGCCCATACCGGCCAAAACCTCACAGAAAAA
CAGCTTCAGAACAAGGTCAAGCAGGAATATAGCAACGTGAGTACGCGAAA
GATTCATGTACAAAGTCCACTTGTTTAAATCGTCATTCCTATGGTACAGC
AGTAGTACCTGTACAGCAGTACGGAGGTGTAGATACTGGCGCTAAAAACA
GCACACAATCAGTTTTCGGTATCATTCGGCATACCTTGTGTGTGTTTGTG
TGTTAATATGTGTGTTTGGGTACGCACTCACAGCTGCTACAAATTTATCT
ACTGTCGACCGCTTTTGTTGCACGCACGCAAAATATGGTGTGTTTGTGTG
TGTTTTGCATACATTGTGTGTGTATGTGTGTGCGTGTTTGTGTGTGTGTG
TGGTTACGCACTCACAGCTGCTACAAATTTATCTACTGTCGACCGTTTTT
GTCGCACGCACGCAAAAGATGCATGCGTGCGACAAAAATTTTAGCCAAAT
CATGAAAAGGTTTGTCGTACAGGGGCTTGTGCGGGTATCAGGAACTAGTG
GGGGCGTCAACCTACGGCGAAACAAATCGTATATAACACTGGGGCAAGCG
ACGAGACTTATTTCATCGTCACAACAGTTTTTGAAGTAGTACGTGTCATT
GTGGTGATGGTTTTACTCTCGTCTCCTTTTTTTTTACTTCTCTTCCGTCT
GCAATTGTTCTATCGAACAGCAAAGCCTAAGCCCGCCCGCACCAGCGACT
CTGAAAAAGTGGATCTGCCTGTCGCTGAAGATCACCGACCTTGGCCTCGA
CGCGATGAAGGACGTGAGCTACCTTCCCGGTCGGGGCCCCAAGCACCCTG
ACCACAAGGTCCTCGATCACAAGCGCGTGACGTTGAAGATGCTCTGCCGC
GAGCGTTTTCACGACATGAACCCCTACGAGCAGGAGGTTTACGTTTTCCG
ACTCGCAAAGTGAGTTGCGAACGACACAGCGGGTTTTTGCTATATTTATA
GACTTCGAAACGCAAAATAATGATACTGGCGCGCACGATATACATAATTG
TTTTGTGACTTTCATGTGCGGCCGCTGCTTTGTATTTAACACAGAACACT
AAAATAGATCAAGTACATACAGCAGTTTCGAACGGTCATTCGCAAAACAC
ATGAGTTCAACACGTCGTCGACAAGCATATGCAATAAATTGAACACGTGC
GCTATGTATCTCCAACGTCGCCTCTGTTTGTTTCCCAGAGGAAGCATAAC
GTCTCACAAGATTCTGAGCGAAGAAGAGTGCGGAATGCTTGACAAAACCG
CGGTTAATGTTGGGCTCGAGGTCGAGAGGCTCGAGGCAATCGTTCCGCGT
GCTGGGTGGTCGTCGGACCTCCGCGAGTAAGTGCCTTTATTGAGTAGTTT
GAATTTTTAGCTTTCGACAGCATATGCCATATATTTCTGTGCGTGTCGTG
CTTTTTTTGCTTTCGAAAGCGGGTGTTTTGAAAGAGAAGGAATATCAATA
TTTCGTACCACACTCCAGCGCGTTTGATATTTTTTCTCTTTGTTTTTCTC
ATGACAATTTGTCGATGTTTCGCCCACTCTTCGATGGCCATCTTTTGAAG
TTCGTCCTTTGCCTTTCTTTCCGCTTTGAAGGGGGATGAGGAAGCTTATC
GCGACGGGGCTTTGTTCGCGGTATTTCATTCACCATGACGGGTTGATCCG
GCTGGTCGAGACGTACGAGAAAGAGCTCCCGGAAGGAATGGATGCTTCCG
AAGCGCATGTCGCCATGCTTCGTGGGCAGCTGCACATCACCACCGAGAAG
GCAAGCAGACTTGTCGTTTTGGATAGGTTGTGAACAGCGCCTTTTTCCCA
TCGTTGCCAACTTTTATAGCGCCAGCCAATCCCATCAACTCTGCACAAAC
AGTTGAGGATAATGTAAAACCCACGGGCTGTATGGCTTTTTGAACGGACC
AAAAACGTTTTGCTACCAGCAACATTATTATTGTTTTCTGCCCGCAATCA
ATATAACTACCCAATGAGTTCTCCCGTGATGATAACACGTTCCTCCTCTC
TCATACCCCTGCCTCCCTCCCCTCTCCCTTCTCGGTATGTGTTCGTTGTG
AAAAGCTTCTCAAGGAAGATGGTCAAATGCAGACTCAGTGGAAAGCGTAC
GAGGCGGAGAAAAAGATCATCGAACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:408360..411536-

>mRNA_P-littoralis_Contig120.70.1 ID=mRNA_P-littoralis_Contig120.70.1|Name=mRNA_P-littoralis_Contig120.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=966bp|location=Sequence derived from alignment at P-littoralis_Contig120:408360..411536- (Pylaiella littoralis U1_48)
ATGAAGCCTCTTAGCGATGGCGAGTCTCTTGAAGATGTAATGCCTGTCGA
AGGCTTCAAGTCGAAAATTATCGATGGAAAGCATCGAGTTAGAGCGTTGG
AGCTGATTGATGGAGAGAAGGGAACCGCCACCTCCATTAACTGCCGTGTC
CACGGAGTCATGTCACCTTCCGCGGAGCGCATGGTCGCAGCAGGGTTCAA
CAGGGTCTCTTCGAGTGTCGTGGAGACTTTGCTCATTGACGACGTCGTCT
GGTATAGAGCTGTTATTGCTGCGATTCAGCAAGCCCATACCGGCCAAAAC
CTCACAGAAAAACAGCTTCAGAACAAGGTCAAGCAGGAATATAGCAACCA
AAGCCTAAGCCCGCCCGCACCAGCGACTCTGAAAAAGTGGATCTGCCTGT
CGCTGAAGATCACCGACCTTGGCCTCGACGCGATGAAGGACGTGAGCTAC
CTTCCCGGTCGGGGCCCCAAGCACCCTGACCACAAGGTCCTCGATCACAA
GCGCGTGACGTTGAAGATGCTCTGCCGCGAGCGTTTTCACGACATGAACC
CCTACGAGCAGGAGGTTTACGTTTTCCGACTCGCAAAAGGAAGCATAACG
TCTCACAAGATTCTGAGCGAAGAAGAGTGCGGAATGCTTGACAAAACCGC
GGTTAATGTTGGGCTCGAGGTCGAGAGGCTCGAGGCAATCGTTCCGCGTG
CTGGGTGGTCGTCGGACCTCCGCGAGGGGATGAGGAAGCTTATCGCGACG
GGGCTTTGTTCGCGGTATTTCATTCACCATGACGGGTTGATCCGGCTGGT
CGAGACGTACGAGAAAGAGCTCCCGGAAGGAATGGATGCTTCCGAAGCGC
ATGTCGCCATGCTTCGTGGGCAGCTGCACATCACCACCGAGAAGCTTCTC
AAGGAAGATGGTCAAATGCAGACTCAGTGGAAAGCGTACGAGGCGGAGAA
AAAGATCATCGAACAG
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