mRNA_P-littoralis_Contig120.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.69.1
Unique NamemRNA_P-littoralis_Contig120.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.69.1 vs. uniprot
Match: A0A6H5JZ11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ11_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.320e-24
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    4 FTVAGDKVLVTAFEHNPVAHLVLGEGRHLCALVADSASSDRLEKSLDVACTSGVKSGWFKEYTGADVIVGGNALPAVIP 240
            F VAGD VLVTAF+ NP+A LVLG GR LCALVAD +  D ++K++D ACT  ++ GWF E   A+VI+ G+ LP+++P
Sbjct:    6 FAVAGDSVLVTAFDENPIAPLVLGNGRTLCALVADMSKKDDVDKAVDAACTDAMRHGWFAELCKANVIISGSTLPSIVP 84
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BLAST of mRNA_P-littoralis_Contig120.69.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 RFTVAGDKVLVTAFEHNPVAHLVLGEGRHLCALVADSASSDRLEKSLDVACTSGVKSGWFKEYTGADVIVGGNALPAVIP 240
            RFTV GD VLVT FE NP+A LVLG+GRHL ALVADS  ++  E  ++ AC +  K GWF E    +VI+ G+ LP+ IP
Sbjct:  240 RFTVPGDCVLVTTFEENPLASLVLGQGRHLGALVADSTKAENAEVEVNEACVTATKHGWFAELNKTEVIMTGSTLPSCIP 319
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BLAST of mRNA_P-littoralis_Contig120.69.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.700e-13
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 RFTVAGDKVLVTAFEHNPVAHLVLGEGRHLCALVADSASSDRLEKSLDVACTSGVKSGWFKEYTGADVIVGGNALPAVIP 240
            RFT AGDKVLV+AFE N +A LVL  GR L ALV D A +  + + +  A  + + +GWFK    A V +GG+ LPA  P
Sbjct:  705 RFTSAGDKVLVSAFEDNNLASLVLTSGRRLFALVGDPAKAVSVGRQVKSALATAMTAGWFKALANAGVPLGGSVLPAGFP 784
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZ11_9PHAE4.320e-2455.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD6_ECTSI2.100e-1955.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCY2_9PHAE3.700e-1348.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:405983..406226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.5349445-CDS-P-littoralis_Contig120:405983..4062261680789515.5349445-CDS-P-littoralis_Contig120:405983..406226Pylaiella littoralis U1_48CDSP-littoralis_Contig120 405984..406226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.69.1prot_P-littoralis_Contig120.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 405984..406226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.69.1

>prot_P-littoralis_Contig120.69.1 ID=prot_P-littoralis_Contig120.69.1|Name=mRNA_P-littoralis_Contig120.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
RFTVAGDKVLVTAFEHNPVAHLVLGEGRHLCALVADSASSDRLEKSLDVA
CTSGVKSGWFKEYTGADVIVGGNALPAVIPP
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mRNA from alignment at P-littoralis_Contig120:405983..406226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.69.1 ID=mRNA_P-littoralis_Contig120.69.1|Name=mRNA_P-littoralis_Contig120.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=244bp|location=Sequence derived from alignment at P-littoralis_Contig120:405983..406226- (Pylaiella littoralis U1_48)
AGATTCACCGTTGCGGGCGACAAGGTGCTGGTGACGGCTTTTGAGCACAA
CCCCGTTGCGCATCTCGTGCTTGGGGAGGGACGCCATCTGTGTGCTTTGG
TAGCAGACTCTGCATCGAGTGACAGGCTAGAGAAGTCGCTTGACGTTGCG
TGCACAAGCGGCGTAAAGTCCGGGTGGTTCAAGGAGTACACTGGTGCAGA
CGTTATCGTAGGGGGGAACGCTTTACCGGCGGTCATCCCTCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:405983..406226-

>mRNA_P-littoralis_Contig120.69.1 ID=mRNA_P-littoralis_Contig120.69.1|Name=mRNA_P-littoralis_Contig120.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig120:405983..406226- (Pylaiella littoralis U1_48)
AGATTCACCGTTGCGGGCGACAAGGTGCTGGTGACGGCTTTTGAGCACAA
CCCCGTTGCGCATCTCGTGCTTGGGGAGGGACGCCATCTGTGTGCTTTGG
TAGCAGACTCTGCATCGAGTGACAGGCTAGAGAAGTCGCTTGACGTTGCG
TGCACAAGCGGCGTAAAGTCCGGGTGGTTCAAGGAGTACACTGGTGCAGA
CGTTATCGTAGGGGGGAACGCTTTACCGGCGGTCATCCCTCCG
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