mRNA_P-littoralis_Contig120.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.67.1
Unique NamemRNA_P-littoralis_Contig120.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.67.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.890e-29
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 MAELPTPDVAGYVGGNAQACHAQFVQFVEANPAAGDEEEGDLSRALAFEIASKVGLHFCQHTEEPTPLEDMSVAKKKVAAKNHPGLCGVCHA 276
            M +LPTPD+  YVGGN QAC+ Q V  + A PA   EE  D+ RA AFE+ SKVG  +C H   P PLEDMS AK+K AA +HPGLCGV HA
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAG--EENTDVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAADHPGLCGVYHA 90
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BLAST of mRNA_P-littoralis_Contig120.67.1 vs. uniprot
Match: A0A6H5K0G9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.280e-23
Identity = 49/81 (60.49%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   10 LPTPDVAGYVGGNAQACHAQFVQFVEANPAAGDEEEGDLSRALAFEIASKVGLHFCQHTEEPTPLEDMSVAKKKVAAKNHP 252
            LP PDVA Y  GNA ACH Q VQF++ANP     +  DL RALAFEIA KVGL  C H  EP PL DMS A +K AA  HP
Sbjct:    5 LPEPDVAAYDDGNATACHEQLVQFLQANP---PSDGDDLPRALAFEIAHKVGLRHCTHASEPHPLGDMSKAARKKAAAEHP 82
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BLAST of mRNA_P-littoralis_Contig120.67.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.990e-18
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    7 ELPTPDVAGYVGGNAQACHAQFVQFVEANPAAGDEEEGDLSRALAFEIASKVGLHFCQHTEEPTPLEDMSVAKKKVAAKNHPGLCGVCHA 276
            ELP PDV  Y  GN +      V  +  NP + D    +L+RA AFEIA+ VG  +C H  EP P+  M+ +  KVAA  HPGLCGV HA
Sbjct:    2 ELPAPDVEAYKAGNTRPATI-MVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCDHLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHA 90
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BLAST of mRNA_P-littoralis_Contig120.67.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  109 EEEGDLSRALAFEIASKVGLHFCQHTEEPTPLEDMSVAKKKVAAKNHPGLCGVCHA 276
            EE  D+ RA AFE+ASKVG  +C H   P PLEDMS AK+K AA +HPGLCGV HA
Sbjct:  104 EENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAADHPGLCGVYHA 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KH61_9PHAE2.890e-2958.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0G9_9PHAE1.280e-2360.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQB2_9PHAE4.990e-1846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE5.390e-1664.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:391085..391363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.4991343-CDS-P-littoralis_Contig120:391084..3913631680789515.4991343-CDS-P-littoralis_Contig120:391084..391363Pylaiella littoralis U1_48CDSP-littoralis_Contig120 391085..391363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.67.1prot_P-littoralis_Contig120.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 391085..391363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.67.1

>prot_P-littoralis_Contig120.67.1 ID=prot_P-littoralis_Contig120.67.1|Name=mRNA_P-littoralis_Contig120.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MAELPTPDVAGYVGGNAQACHAQFVQFVEANPAAGDEEEGDLSRALAFEI
ASKVGLHFCQHTEEPTPLEDMSVAKKKVAAKNHPGLCGVCHAG
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mRNA from alignment at P-littoralis_Contig120:391085..391363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.67.1 ID=mRNA_P-littoralis_Contig120.67.1|Name=mRNA_P-littoralis_Contig120.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig120:391085..391363- (Pylaiella littoralis U1_48)
ATGGCCGAGCTACCCACGCCAGACGTCGCTGGTTACGTGGGGGGCAACGC
GCAGGCTTGCCATGCACAGTTTGTGCAGTTTGTGGAAGCAAACCCAGCGG
CTGGCGACGAGGAGGAGGGCGATCTATCTCGAGCGCTCGCATTTGAGATA
GCGAGCAAGGTAGGCCTCCACTTCTGCCAACATACCGAAGAACCCACCCC
CCTTGAGGACATGAGTGTGGCCAAGAAGAAGGTGGCTGCCAAGAACCATC
CGGGCCTGTGCGGTGTGTGCCACGCCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:391085..391363-

>mRNA_P-littoralis_Contig120.67.1 ID=mRNA_P-littoralis_Contig120.67.1|Name=mRNA_P-littoralis_Contig120.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig120:391085..391363- (Pylaiella littoralis U1_48)
ATGGCCGAGCTACCCACGCCAGACGTCGCTGGTTACGTGGGGGGCAACGC
GCAGGCTTGCCATGCACAGTTTGTGCAGTTTGTGGAAGCAAACCCAGCGG
CTGGCGACGAGGAGGAGGGCGATCTATCTCGAGCGCTCGCATTTGAGATA
GCGAGCAAGGTAGGCCTCCACTTCTGCCAACATACCGAAGAACCCACCCC
CCTTGAGGACATGAGTGTGGCCAAGAAGAAGGTGGCTGCCAAGAACCATC
CGGGCCTGTGCGGTGTGTGCCACGCCGGT
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