mRNA_P-littoralis_Contig861.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig861.14.1
Unique NamemRNA_P-littoralis_Contig861.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig861.14.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.380e-13
Identity = 38/90 (42.22%), Postives = 44/90 (48.89%), Query Frame = 1 
Query:   10 CSNGLAGFEGTSSDRVTACCPFGCNQCGGAGCNMSGLTAGYGSEDCCITGGVEFQKHCDATGAAPCVIND---------QRCSNGLPGFE 252
            CSNGL G +G        CCP GC QCGG GCN SG  AG     CC        K+CD T  APC+I           + CSNG+ G +
Sbjct:  270 CSNGLEGIDGNG----VVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGID 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig861.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE2.380e-1342.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig861contigP-littoralis_Contig861:65291..67155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQV4
PFAMsGlyco_hydro_88
Model size459
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.77e-17
EggNOG OGs2CYCX@1|root,2S3MN@2759|Eukaryota
DescriptionGlycosyl Hydrolase Family 88
Cds size459
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.2134812-CDS-P-littoralis_Contig861:65290..655071680791737.2134812-CDS-P-littoralis_Contig861:65290..65507Pylaiella littoralis U1_48CDSP-littoralis_Contig861 65291..65507 +
1680791737.2248945-CDS-P-littoralis_Contig861:65794..658381680791737.2248945-CDS-P-littoralis_Contig861:65794..65838Pylaiella littoralis U1_48CDSP-littoralis_Contig861 65795..65838 +
1680791737.2354128-CDS-P-littoralis_Contig861:65931..660071680791737.2354128-CDS-P-littoralis_Contig861:65931..66007Pylaiella littoralis U1_48CDSP-littoralis_Contig861 65932..66007 +
1680791737.247121-CDS-P-littoralis_Contig861:66656..667281680791737.247121-CDS-P-littoralis_Contig861:66656..66728Pylaiella littoralis U1_48CDSP-littoralis_Contig861 66657..66728 +
1680791737.2639332-CDS-P-littoralis_Contig861:67105..671551680791737.2639332-CDS-P-littoralis_Contig861:67105..67155Pylaiella littoralis U1_48CDSP-littoralis_Contig861 67106..67155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig861.14.1prot_P-littoralis_Contig861.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig861 65291..67155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig861.14.1

>prot_P-littoralis_Contig861.14.1 ID=prot_P-littoralis_Contig861.14.1|Name=mRNA_P-littoralis_Contig861.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
DGKCSNGLAGFEGTSSDRVTACCPFGCNQCGGAGCNMSGLTAGYGSEDCC
ITGGVEFQKHCDATGAAPCVINDQRCSNGLPGFEEKNKCCIYDIVDSWTF
CHDTETAPCVVNGYPDCTGEHPWIGDGMCDKDPSTFGDLNVPECGYDGGD
CCA
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mRNA from alignment at P-littoralis_Contig861:65291..67155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig861.14.1 ID=mRNA_P-littoralis_Contig861.14.1|Name=mRNA_P-littoralis_Contig861.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1865bp|location=Sequence derived from alignment at P-littoralis_Contig861:65291..67155+ (Pylaiella littoralis U1_48)
GACGGAAAGTGCAGTAACGGTCTGGCAGGTTTTGAAGGAACCAGCTCGGA
CAGGGTCACCGCCTGCTGCCCGTTCGGGTGCAACCAGTGCGGTGGAGCTG
GCTGCAACATGTCCGGTTTGACGGCGGGATACGGCAGCGAAGACTGCTGC
ATAACCGGTGGGGTCGAATTTCAGAAGCATTGCGACGCTACCGGAGCCGC
CCCGTGCGTGATAAACGGTTAGTCTGGTGAAGATGACGAGATGAGGCGGG
TCGATTGCACGTGGTATTTCTGTCACTTGTGCTTAAAAGTAGAAGAGTTT
AAACGCACTTGCGCATGGCTCATGTTGTTTTGATGTGTCTTGGTGACTGC
TACGCGTCCCTTCTAATATATTGCACACCTTCTTCGCCGCGCGGTGCTGT
TGTCGCACCTCGACTGTCCCCATGGTGATCTCTCCGGCCGAAACTGGCAT
ATTTACGCTACTTCTTTTCACAATAAAAACCACCATGCTTCTGTCGGTGT
GCAGACCAAAGATGCAGCAATGGTCTGCCTGGCTTCGAAGAAAAGAACTC
GGACGGGATCACGGTTTGCTGCCCGATAGGCTGCGGCCAGTGCGGTGGAG
ACTCTTGCGCTAACTTTGGTTTGCCGAACTACGGCGCCGAGAAATGCTGC
ATCTACGACATCGTCGATTCCTGGACCTTCTGCCATGATACCGAAACCGC
CCCGTGCGTCGTCAACGGTCAGTTCTCAGTGTCTAAAGTACATCTATGTG
TGTTTTTTGTAGACCCTATCTTCCTGACAAAAAACATTCAGACGACCATA
CATCGTGCCACACGTATTTTCTGTGGTATAAGAGCACCATAACCAGTGAC
TCTGCAGGACCAGATGCTGGTCTTGGGGTAACGGCGCCAGGTTCAAAAAT
TGTCGTGTAAGTGTTCAGTGTCTTCTTTGTGTCGGAGCCCTGCCACATCA
TCGCAATACCCGTACCCTTCCATGATAGCCCGCAAGAACATACGGCGACT
ACAAGGAGGCCGGGTCCGATCGTCTTATGTGCCGATCACCTCGAACATCG
GGAGATATCTTCGTCTAGCGTGTGCCCTCCTGTTCCTCATTGTGCATGGA
TGAACCAGGCCAAAACCCTTGATAGTGGACTCGGGTATCATGCTTAAGGT
GCAGGTACTAGCGTTGCTATCAAAATGGGTATCTTGCAGTATTCTCTCGA
GCAAAAGCAAATCTTTTATGTTTTGAATCCCACCTTCCAAACGCAGACAA
GTAGCTGCACCCCAACTGAAGTAAAAAGAGTCCAAGGACAACTTTGCCCC
AAACTCGCACAGTCCCGCCTTCGCTAAATCCAGAGCCCCCGCCCTATCCT
GCTCCCCTTTGGAAAGGCTACCCTGACTGCACCGGTGAACACCCGTGGAT
TGGCGACGGCATGTGTGACAAAGACCCCTCTACGTTCGGTGAGCAGTACG
TTTAATACGGTATGTATCATACCATGTGCCACAATGTCATGCATTTCACG
TGCATATTCACACAGCGGTGCTGCGATATGGCCGAAAAAAAAGGAACGAC
CAATTTTAAACTTCCCTCATGCCCAATGGGCTAGCCTCGACAAAGAAAGG
AGAACCCTTCATCATCGCCGGAGCTTGTGTATCCACCGGGTTTCTCACGG
CATGCAGAATGGCGATTCTCTCGACTGTCAGAGACTGCTCGTGGGGAGCA
TGTACGAGCGTGACGATGAGCACTTGTTGTAGTCACACCCCGTCGATTCG
ACCATGTTACTAGCTCGATGCCCATGCCATTCGCTTTTTTTACTCCCTTG
TGGACCATATCACAGGTGATTTGAATGTTCCGGAATGCGGCTATGATGGA
GGTGACTGCTGCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig861:65291..67155+

>mRNA_P-littoralis_Contig861.14.1 ID=mRNA_P-littoralis_Contig861.14.1|Name=mRNA_P-littoralis_Contig861.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig861:65291..67155+ (Pylaiella littoralis U1_48)
GACGGAAAGTGCAGTAACGGTCTGGCAGGTTTTGAAGGAACCAGCTCGGA
CAGGGTCACCGCCTGCTGCCCGTTCGGGTGCAACCAGTGCGGTGGAGCTG
GCTGCAACATGTCCGGTTTGACGGCGGGATACGGCAGCGAAGACTGCTGC
ATAACCGGTGGGGTCGAATTTCAGAAGCATTGCGACGCTACCGGAGCCGC
CCCGTGCGTGATAAACGACCAAAGATGCAGCAATGGTCTGCCTGGCTTCG
AAGAAAAGAACAAATGCTGCATCTACGACATCGTCGATTCCTGGACCTTC
TGCCATGATACCGAAACCGCCCCGTGCGTCGTCAACGGCTACCCTGACTG
CACCGGTGAACACCCGTGGATTGGCGACGGCATGTGTGACAAAGACCCCT
CTACGTTCGGTGATTTGAATGTTCCGGAATGCGGCTATGATGGAGGTGAC
TGCTGCGCC
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