mRNA_P-littoralis_Contig120.63.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE) HSP 1 Score: 270 bits (689), Expect = 3.370e-81 Identity = 128/217 (58.99%), Postives = 154/217 (70.97%), Query Frame = 3
Query: 684 PLPLQEERHRDKKWRKGWQELPAEKNADGKPVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETFS 1334
P PLQ+ RHR KK R G +P+E DG V F R+HLYGVMGI++++G+TQ RR TD WG ++ VR+CMPRDLF LFY RFFHMAP I + P DAKHH R FE+ALN WS L + G W+SYDEQMVK TARA +MRFNP+KPIKHGIK + C +G+C++Q IDGGF GD LR + CPLG TARTVL+V+LEACE FS
Sbjct: 232 PSPLQQPRHRKKKTRTGLPYVPSEDRPDGSKVYGFHRKHLYGVMGILISAGITQKRRLTDHWGVGDHDNYPLVRKCMPRDLFTLFYCRFFHMAPVIEALSTTHPEHDAKHHIRAFEDALNTCWSSLVELGGWVSYDEQMVKGTARAMHGLMRFNPQKPIKHGIKRFACWCWTGYCYLQSIDGGFYGDMGLRPHDKCPLGRTARTVLHVLLEACEVFS 448
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE) HSP 1 Score: 246 bits (628), Expect = 5.190e-75 Identity = 112/191 (58.64%), Postives = 133/191 (69.63%), Query Frame = 3
Query: 762 ADGKPVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETFS 1334
ADG F R+HLY V G D G ++ VR CMPRDLF+LFY RFFH+AP GK++++DP +D KHH RK E+ LN+ WS+L +PGAWLSYDEQMVKSTAR +MR+N KPIKHGIK W ICCPSG+ FVQ IDGGF GD +LR Y CPLG +ARTV+YV+LEACETFS
Sbjct: 21 ADGSREYGFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYDCKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFS 211
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 214 bits (545), Expect = 1.480e-60 Identity = 92/138 (66.67%), Postives = 113/138 (81.88%), Query Frame = 3
Query: 921 DLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETFS 1334
+LF+LFY RFF++AP GK++++DP +D KHH RK E+ N+ WS+L +PGAWLSYDEQMVKSTAR F +MR+N KPIK+GIK W ICCPSG+CFVQ IDGGF GD +LR Y CPLG +ARTV+YV+LEACETFS
Sbjct: 8 NLFVLFYGRFFNLAPATGKLNKDDPQYDCKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFS 145
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE) HSP 1 Score: 182 bits (461), Expect = 2.090e-49 Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = 3
Query: 726 RKGWQELPAEKNADGKPVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFC 1208
R G +P+E DG V F R+HLYGVMGI++++G+TQ RR TD WG ++ VR+CMPRDLF FY RFF+M P I + + P +D+KHH R FE+ALN WS L + W+SYDEQMVKSTARA +MRFNP+KPIKHGI G+ P FC
Sbjct: 70 RTGLSYVPSEDLPDGSKVYGFHRKHLYGVMGILISAGITQKRRLTDHWGAGDHDNYPPVRKCMPRDLFTFFYCRFFYMTPVIEALSKTHPEYDSKHHIRAFEDALNTCWSSLVELEGWVSYDEQMVKSTARAMHGLMRFNPQKPIKHGIMGF----PRHFC 226
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 190 bits (482), Expect = 5.420e-49 Identity = 92/192 (47.92%), Postives = 121/192 (63.02%), Query Frame = 3
Query: 774 PVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHM----APP--IGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETF 1331
P AF R+H+YG++GI +T GLT+ R W S D+ VR+CM RDLF L Y RF H APP G+ +P FD+K H R+ E+ LN W++ D WL YDEQMVK+ + ++MR +PKKPI HG+K + IC G+CFV +DGG GDP+LR + DCPLG T R VL+V+L AC+ F
Sbjct: 692 PEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKF 883
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.460e-46 Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 3
Query: 1020 RKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETFS 1334
R+ E+ LN WSKL +PGAWLSYDEQMVKSTARA F +MRFN KPIK GIKGW ICCPSG+CFVQ IDGGF GD +LR + CPLG +ARTVLYV+LEAC TFS
Sbjct: 3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFS 107
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.220e-45 Identity = 76/125 (60.80%), Postives = 95/125 (76.00%), Query Frame = 3
Query: 762 ADGKPVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIM 1136
ADG AF R+HLYGVMGI++T+GLT+ R D WG ++ VR CMPRDLF+LFY RFFH+APP GK+ ++DP +D+KHH R+ E+ LN WSKL +PGAWLS+DEQMVKSTARA F +M
Sbjct: 2 ADGSREYAFERKHLYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAPPNGKLKKDDPQYDSKHHIRELEDVLNECWSKLVEPGAWLSHDEQMVKSTARAMFALM 126
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5KNP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP3_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.050e-43 Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 3
Query: 792 RQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKH 1166
R+HL GVMGI++++G+TQ RR TD G ++ VR+CMPRDLF LFY R+FHMAP I + + P +D+KHH R E+ALN WS L + G W+SYDEQMVKSTARA +MRFNP+KPIKH
Sbjct: 57 RKHLNGVMGILISAGITQKRRLTDHLGVGDHDNYPLVRKCMPRDLFTLFYCRYFHMAPVIEALSKKHPEYDSKHHIRALEDALNTCWSSLVELGGWVSYDEQMVKSTARAMHGLMRFNPQKPIKH 181
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.080e-43 Identity = 92/217 (42.40%), Postives = 112/217 (51.61%), Query Frame = 3
Query: 684 PLPLQEERHRDKKWRKGWQELPAEKNADGKPVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHMAPPIGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETFS 1334
PL QE RHR KK +G+Q +P ADG AF +HLYGVMGI++T+G+TQ RR TD WG ++ VR CMPRDLF+LFY RFFH+AP + GIK W CCPSG+CFVQ IDGGF GD +LR + CP+G +ARTV+YV+LEACETFS
Sbjct: 62 PLEHQEPRHRAKKVTRGFQTVPYRDLADGSREYAFEHKHLYGVMGILITAGITQNRRITDHWGMELHDNYPLVRACMPRDLFVLFYGRFFHLAPATTATTTS-----------------------------------------------------------GIKCWAGCCPSGYCFVQSIDGGFSGDIKLRPHASCPIGKSARTVVYVLLEACETFS 219
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 169 bits (427), Expect = 8.930e-42 Identity = 91/243 (37.45%), Postives = 121/243 (49.79%), Query Frame = 3
Query: 774 PVAAFTRQHLYGVMGIVMTSGLTQLRRQTDQWGTSPDLDFVWVRQCMPRDLFLLFYSRFFHM-------------------------------------------------------APP--IGKVDENDPSFDAKHHCRKFEEALNRVWSKLADPGAWLSYDEQMVKSTARANFFIMRFNPKKPIKHGIKGWCICCPSGFCFVQYIDGGFLGDPQLRKYKDCPLGNTARTVLYVVLEACETF 1331
P AF R+H+YG++GI +T GLT R W S D+ VR+CM RDLF L YSRF H APP G+ +P FD+K H R+ E+ LN W++ D WL YDEQM+++ + ++MR NPK+PI HG+K + IC G+CFV +DGG GDP+LR + DCPLG T R VL+V+L AC+ F
Sbjct: 587 PEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKF 829 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig120.63.1 >prot_P-littoralis_Contig120.63.1 ID=prot_P-littoralis_Contig120.63.1|Name=mRNA_P-littoralis_Contig120.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp MHHDGLRQRPKKNAQSGGAAAGGGSANGGAARGGGDGAISDANYDSHEEVback to top mRNA from alignment at P-littoralis_Contig120:383281..386525+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig120.63.1 ID=mRNA_P-littoralis_Contig120.63.1|Name=mRNA_P-littoralis_Contig120.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3245bp|location=Sequence derived from alignment at P-littoralis_Contig120:383281..386525+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig120:383281..386525+ >mRNA_P-littoralis_Contig120.63.1 ID=mRNA_P-littoralis_Contig120.63.1|Name=mRNA_P-littoralis_Contig120.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig120:383281..386525+ (Pylaiella littoralis U1_48)back to top |