mRNA_P-littoralis_Contig120.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.59.1
Unique NamemRNA_P-littoralis_Contig120.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.890e-15
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:  199 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            HI  PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:   82 HIVEPPSQAASPVPQDDAGLPLSSTGARARQEALKAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.390e-14
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1 
Query:  124 ASVCADPQQTLQHTLHHQQLQQFEPHIHPPPSIVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            ASV +DP     H +        EP       +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:  712 ASVLSDPDSATGHIV--------EPPSQAASPVPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPERLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 843
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.800e-14
Identity = 53/141 (37.59%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:  124 ASVCADPQQTLQHTLHHQQLQQFEPHIHPPPSIVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            A V  DP     H++        EP       +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:   70 AFVLIDPNSATGHSV--------EPPSQAASPLPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5JEY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.040e-13
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:  199 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            HI  PPS     +  DD   P+SST ARARQ+AL   D   A    +RI  +MDK ++  L++   +  GP  P+ F++F SS + V  ++L  S  +R+Q+I S  W  GWL  LRKRVR
Sbjct:   82 HIVEPPSQAASPVPQDDAGWPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKQKREQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSGVKRKQTINSSTWVTGWLPLLRKRVR 201
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.590e-13
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:  124 ASVCADPQQTLQHTLHHQQLQQFEPHIHPPPSIVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            ASV  DP     H +        EP       +  DD  LP++ST+ARARQ+ALD  D        +RI  +MDK++    ++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:  171 ASVLIDPNSATGHIV--------EPPGQAASPLPQDDAGLPLTSTRARARQEALDAADAAATEADIIRIQDKMDKLKPEQRDSIIRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 302
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5L698_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L698_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.360e-12
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  229 DDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVR 540
            DD  L ++ST ARARQ+AL+  D        +RI  +MDK++   L++   +  GP  P  FS+F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR
Sbjct:    4 DDAGLSLTSTGARARQEALNAADAAATEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPGEFSRFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVR 108
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BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5KYW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.770e-10
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:  229 DDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWL 516
            DD  LP+SST ARARQ+ALD  D   A    +RI  +MDK++   L++   +  GP  P+ FS+F  S + V  ++L  SD +R+Q+  S     GWL
Sbjct:  279 DDAGLPLSSTGARARQEALDAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFSRFAPSCKGVVTEILKKSDVKRKQTFKSSTSVTGWL 375
[Close]
BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5KFU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.650e-7
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:  199 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQRE 477
            HI  PPS     +  DD  LP+SST ARARQ+AL   D   A    +RI  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+
Sbjct:  235 HIVEPPSQAASPVPQDDAGLPLSSTGARARQEALHAADAAAAEADTIRIQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRK 333
[Close]
BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Match: A0A6H5JMJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.890e-7
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  199 HIHPPPS-----IVHDDRALPVSSTQARARQDALDLDDRETARQRNLRIGQQMDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILS 492
            HI  PPS     +   D  LP+SST ARARQ+AL   D   A    +R+  +MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S
Sbjct:   22 HIVEPPSQAASPVPQGDAGLPLSSTGARARQEALHAADAAAAEADTIRLQDKMDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNS 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K8W4_9PHAE9.890e-1542.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KHE6_9PHAE1.390e-1438.30Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQN2_9PHAE5.800e-1437.59NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEY5_9PHAE1.040e-1341.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L9_9PHAE1.590e-1336.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L698_9PHAE6.360e-1241.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYW7_9PHAE9.770e-1040.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU7_9PHAE6.650e-739.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMJ9_9PHAE7.890e-737.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:360384..360929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.3382106-CDS-P-littoralis_Contig120:360383..3609291680789515.3382106-CDS-P-littoralis_Contig120:360383..360929Pylaiella littoralis U1_48CDSP-littoralis_Contig120 360384..360929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.59.1prot_P-littoralis_Contig120.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 360384..360929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.59.1

>prot_P-littoralis_Contig120.59.1 ID=prot_P-littoralis_Contig120.59.1|Name=mRNA_P-littoralis_Contig120.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
LAHTPVPPWSTLPVHGPTHSHQHSVAQPWASRCDESLSQAAASVCADPQQ
TLQHTLHHQQLQQFEPHIHPPPSIVHDDRALPVSSTQARARQDALDLDDR
ETARQRNLRIGQQMDKIRQNDLEAFHNVGPCSPEAFSQFVSSLRNVTNDL
LTLSDSQREQSILSERWAPGWLHHLRKRVRTG
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mRNA from alignment at P-littoralis_Contig120:360384..360929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.59.1 ID=mRNA_P-littoralis_Contig120.59.1|Name=mRNA_P-littoralis_Contig120.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig120:360384..360929- (Pylaiella littoralis U1_48)
CTGGCGCACACGCCGGTACCACCTTGGTCGACTTTACCTGTGCATGGCCC
CACGCACTCACACCAACACTCCGTTGCTCAGCCTTGGGCTTCTCGTTGTG
ATGAATCTCTTTCGCAAGCCGCCGCTAGTGTTTGCGCCGATCCCCAGCAG
ACTTTGCAACATACGTTGCATCACCAACAACTGCAACAGTTCGAACCGCA
TATCCACCCGCCGCCGTCTATTGTGCACGACGATCGTGCTCTTCCTGTGT
CGTCCACTCAAGCTCGTGCCCGCCAAGACGCTTTAGATTTAGATGACCGC
GAAACTGCCCGGCAGCGCAACCTTCGCATCGGCCAACAGATGGACAAGAT
TCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGGGCCTTGCAGCCCTG
AGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACGTGACCAACGATTTG
TTGACTTTGAGTGACAGTCAACGCGAGCAATCCATTCTCTCCGAACGATG
GGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGTGCGCACTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:360384..360929-

>mRNA_P-littoralis_Contig120.59.1 ID=mRNA_P-littoralis_Contig120.59.1|Name=mRNA_P-littoralis_Contig120.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig120:360384..360929- (Pylaiella littoralis U1_48)
CTGGCGCACACGCCGGTACCACCTTGGTCGACTTTACCTGTGCATGGCCC
CACGCACTCACACCAACACTCCGTTGCTCAGCCTTGGGCTTCTCGTTGTG
ATGAATCTCTTTCGCAAGCCGCCGCTAGTGTTTGCGCCGATCCCCAGCAG
ACTTTGCAACATACGTTGCATCACCAACAACTGCAACAGTTCGAACCGCA
TATCCACCCGCCGCCGTCTATTGTGCACGACGATCGTGCTCTTCCTGTGT
CGTCCACTCAAGCTCGTGCCCGCCAAGACGCTTTAGATTTAGATGACCGC
GAAACTGCCCGGCAGCGCAACCTTCGCATCGGCCAACAGATGGACAAGAT
TCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGGGCCTTGCAGCCCTG
AGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACGTGACCAACGATTTG
TTGACTTTGAGTGACAGTCAACGCGAGCAATCCATTCTCTCCGAACGATG
GGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGTGCGCACTGGC
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