mRNA_P-littoralis_Contig120.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.57.1
Unique NamemRNA_P-littoralis_Contig120.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.690e-39
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI   H
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITH 88
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BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.550e-37
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI   H
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITH 280
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BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5KFJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.150e-36
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 2 
Query:   38 IDVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDHTRDVGISACRFLDESNQQGVF*TAP 325
            +DV+KE+LFLRQ+WR MLP  GMPCIPVFEDNQGAIQ+A NPI+NSNSKHIDVRHHF+RELVERKEI   H       A     E   +G F T+P
Sbjct:   17 VDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISAIHVPSPYQHADFHTYEEFVEGCFRTSP 112
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BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5JQ86_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ86_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.440e-36
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQ WRSMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHF+RELVERKEI   H
Sbjct:  279 DVLKEVLFLRQAWRSMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFMRELVERKEISITH 348
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.640e-36
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI 238
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI 286
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.220e-36
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI   H
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITH 407
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.860e-36
Identity = 62/70 (88.57%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIRELVERKEI   H
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITH 138
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.750e-35
Identity = 64/70 (91.43%), Postives = 64/70 (91.43%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP  GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEI   H
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITH 382
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5KL46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL46_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.320e-35
Identity = 62/70 (88.57%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            DVLKEVLFLRQVWR MLP AGMPCIPVFEDNQGAIQIAHNPITNSNSK IDVRH  IRELVERKEI   H
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKRIDVRHRLIRELVERKEISMTH 138
[Close]
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.110e-35
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRSMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEIDFDH 250
            +VLKEVLFLRQVWR MLP AG+PCIPVFEDNQGAIQIAHNPITNSN KHIDVRHHFIRELVERKEI   H
Sbjct:  178 NVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQIAHNPITNSNPKHIDVRHHFIRELVERKEISTTH 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE3.690e-3992.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE8.550e-3792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ4_9PHAE1.150e-3665.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ86_9PHAE4.440e-3691.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE4.640e-3696.97Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE7.220e-3692.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTT9_9PHAE8.860e-3688.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3H4_9PHAE1.750e-3591.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL46_9PHAE2.320e-3588.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMV5_9PHAE6.110e-3588.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:346531..346862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size332
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue5.86e-10
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size231
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.2897344-UTR-P-littoralis_Contig120:346530..3466151680789515.2897344-UTR-P-littoralis_Contig120:346530..346615Pylaiella littoralis U1_48UTRP-littoralis_Contig120 346531..346615 +
1680789515.309571-UTR-P-littoralis_Contig120:346846..3468621680789515.309571-UTR-P-littoralis_Contig120:346846..346862Pylaiella littoralis U1_48UTRP-littoralis_Contig120 346847..346862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.3018153-CDS-P-littoralis_Contig120:346615..3468461680789515.3018153-CDS-P-littoralis_Contig120:346615..346846Pylaiella littoralis U1_48CDSP-littoralis_Contig120 346616..346846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.57.1prot_P-littoralis_Contig120.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 346616..346846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.57.1

>prot_P-littoralis_Contig120.57.1 ID=prot_P-littoralis_Contig120.57.1|Name=mRNA_P-littoralis_Contig120.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKE
IDFDHTRDVGISACRFLDESNQQGVF*
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mRNA from alignment at P-littoralis_Contig120:346531..346862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.57.1 ID=mRNA_P-littoralis_Contig120.57.1|Name=mRNA_P-littoralis_Contig120.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=332bp|location=Sequence derived from alignment at P-littoralis_Contig120:346531..346862+ (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTCTATGTTGCCAACAGCG
GGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGAT
CGCCCACAATCCAATCACCAACTCGAACTCGAAGCACATAGACGTACGGC
ATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTGATTTCGATCAC
ACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCA
GCAGGGAGTCTTTTGAACTGCTCCGTGATTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:346531..346862+

>mRNA_P-littoralis_Contig120.57.1 ID=mRNA_P-littoralis_Contig120.57.1|Name=mRNA_P-littoralis_Contig120.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig120:346531..346862+ (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAG
ATTGATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCT
TGACGAAAGCAATCAGCAGGGAGTCTTTTGA
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