mRNA_P-littoralis_Contig120.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.47.1
Unique NamemRNA_P-littoralis_Contig120.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5J641_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J641_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.510e-51
Identity = 87/133 (65.41%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPPPTTARFLDDDGTIRSNRWATPSTGRPPAATSQTREDIREDVRERTLLRPAQNIARNRGWRTAI 399
            PGC+LDA   AF+FFQSQGRMCIEQTFGIM            V LRNTA VVHA+TRLHN+LRRCRSEPPP TARFL+++GTIRSNRWATPS  R          +IRE++R RT +RPA+NI RNR WRTAI
Sbjct:   64 PGCDLDADQQAFNFFQSQGRMCIEQTFGIM------------VHLRNTASVVHAITRLHNYLRRCRSEPPPATARFLNENGTIRSNRWATPSDSR----------NIRENIRNRTFMRPAENIPRNRRWRTAI 174          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.400e-18
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
            PG +L A+ DA +++ SQ RM IEQT+GI+++ + IL +P+ V +     VV+AV RLHNF R  + +          PPP  A   DDDG I S+ + T    TGRP    A  S+ RE IR+++    L+RP  NIAR+
Sbjct:  120 PGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 258          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-17
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
            PG +L A+ DA +++ SQ RM IEQT+GI+++ + IL +P+ V +     VV+AV RLHNF R  + +          PPP  A   DDDG I S+ + T    TGRP    A  S+ RE IR+++    L+RP  NIAR+
Sbjct:  272 PGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 410          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.270e-17
Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE--------PPPTTARFLDDDGTIRSNRWATPSTGRPPAATS--QTREDIREDVRERTLLRPAQNIARN 378
            PG  L  + DA++F+QSQ R+ IEQ FGI++K + IL KPL + L     V++A+ RLHNFLRR R+         P P +  F  D G   S     P+ GRP  A      RE IR+ + ++++ RP  N+ RN
Sbjct:  283 PGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRRRAPVLQSAWNVPMPESVTFHPDGGIDGSYYDTVPTRGRPSKAAEVCMPREIIRDYLDQKSMGRPRFNLNRN 418          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.180e-17
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPP--------PTTARFLDDDGTIRSNRWAT-PSTGRPPAA--TSQTREDIREDVRERTLLRPAQNIARNRG 384
            PG +L  + DA++F+QSQ R+ IEQ FGIM+K + IL +PL + L   + V+++V RLHNFLRR R+  P        P   RF  D G++    + T P+ GR       S  RE IR+ + + ++ RP  N+ RN G
Sbjct:  279 PGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSPWRVTQPVEVRFRPD-GSLEGTYFDTVPTRGRQTRGGRASAPREAIRQYLEQYSIGRPRWNLQRNSG 416          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.410e-9
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   70 EQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSE----------PPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
            EQT+GI+++ + IL +P+ V +     VV+AV RLHNF    + +          PPP  A   DDDG I S+ + T    TGRP    A  S+ RE IR+++    L+RP  NIAR+
Sbjct:  274 EQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVA--FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 389          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.620e-8
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPPPTTARFLDDDGTIRSNRWATPS--TGRP---PAATSQTREDIREDVRERTLLRPAQNIARN 378
            PG +L A+ DA + + SQ RM IEQT+GI+++ + IL +P+ V +     VV                         DDDG I S+ + T    TGRP    A  S+ RE IR+++    L+RP  NIAR+
Sbjct:  221 PGTSLSASQDACNNYVSQYRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVV-----------------------AFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLIRPEHNIARS 328          
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Match: A0A6H5JA67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA67_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.400e-7
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 PGCNLDAATDAFHFFQSQGRMCIEQTFGIMMKL 99
            PGC+L+A  DAF+FFQSQGR+CIEQTFGIM  L
Sbjct:   38 PGCDLNADQDAFNFFQSQGRICIEQTFGIMATL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J641_9PHAE2.510e-5165.41DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE2.400e-1841.13DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.220e-1741.13DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.270e-1739.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE3.180e-1739.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE4.410e-938.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE4.620e-835.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA67_9PHAE4.400e-775.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:317388..318109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.2271967-UTR-P-littoralis_Contig120:317387..3174501680789515.2271967-UTR-P-littoralis_Contig120:317387..317450Pylaiella littoralis U1_48UTRP-littoralis_Contig120 317388..317450 -
1680789515.2608736-UTR-P-littoralis_Contig120:318049..3181091680789515.2608736-UTR-P-littoralis_Contig120:318049..318109Pylaiella littoralis U1_48UTRP-littoralis_Contig120 318050..318109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789515.2360523-CDS-P-littoralis_Contig120:317450..3177801680789515.2360523-CDS-P-littoralis_Contig120:317450..317780Pylaiella littoralis U1_48CDSP-littoralis_Contig120 317451..317780 -
1680789515.2496674-CDS-P-littoralis_Contig120:318019..3180491680789515.2496674-CDS-P-littoralis_Contig120:318019..318049Pylaiella littoralis U1_48CDSP-littoralis_Contig120 318020..318049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.47.1prot_P-littoralis_Contig120.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 317451..318049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.47.1

>prot_P-littoralis_Contig120.47.1 ID=prot_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MCIEQTFGIMMKLFPILHKPLMVPLRNTAGVVHAVTRLHNFLRRCRSEPP
PTTARFLDDDGTIRSNRWATPSTGRPPAATSQTREDIREDVRERTLLRPA
QNIARNRGWRTAIVVDSEK*
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mRNA from alignment at P-littoralis_Contig120:317388..318109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.47.1 ID=mRNA_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=722bp|location=Sequence derived from alignment at P-littoralis_Contig120:317388..318109- (Pylaiella littoralis U1_48)
CCTGGGTGCAACCTCGACGCAGCAACGGACGCGTTTCACTTCTTCCAGTC GCAAGGCCGCATGTGCATCGAGCAAACCTTCGGAATCATGGTGAGTGTGG GCACATCATTATTTTTTTGGTGCTTTCGGACATGAGTTGGAGGAACTGCG ACCGGCGGGAGTTCGAAATGATTTTTTACCTTTCTCTCTAAAGTCATTTT CGGTTTGAATCAGATGTTTGAGTGCAGCTGTGCGCGGGAGCGGCCTGAGA AGAGGTGTACGTTGACTCTCCCGCCCCCCCACCTGCCCCCATTATTCCCC ACCTCCCCCTTGCCGCGCCCCTTGCACAGATGAAGCTGTTTCCCATCCTG CACAAACCGCTCATGGTCCCCCTTCGCAACACCGCAGGCGTCGTGCACGC CGTCACTCGGCTTCACAACTTCCTCCGCAGATGCCGTAGCGAGCCACCGC CCACGACGGCGAGGTTCCTCGACGACGACGGTACGATCCGGAGCAACCGG TGGGCGACACCATCGACCGGAAGACCTCCGGCGGCCACATCTCAGACTCG CGAGGACATCCGCGAGGACGTCAGGGAGAGGACACTCCTACGGCCGGCAC AGAACATCGCTCGCAACCGTGGATGGAGGACGGCCATCGTCGTTGACTCA GAGAAGTAACGTCGGTCGGAAATGGGGTGTGGCGTTTGGCCGATATTTCC ACGCGTTGGGGCGGATGTGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:317388..318109-

>mRNA_P-littoralis_Contig120.47.1 ID=mRNA_P-littoralis_Contig120.47.1|Name=mRNA_P-littoralis_Contig120.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig120:317388..318109- (Pylaiella littoralis U1_48)
ATGTGCATCGAGCAAACCTTCGGAATCATGATGAAGCTGTTTCCCATCCT
GCACAAACCGCTCATGGTCCCCCTTCGCAACACCGCAGGCGTCGTGCACG
CCGTCACTCGGCTTCACAACTTCCTCCGCAGATGCCGTAGCGAGCCACCG
CCCACGACGGCGAGGTTCCTCGACGACGACGGTACGATCCGGAGCAACCG
GTGGGCGACACCATCGACCGGAAGACCTCCGGCGGCCACATCTCAGACTC
GCGAGGACATCCGCGAGGACGTCAGGGAGAGGACACTCCTACGGCCGGCA
CAGAACATCGCTCGCAACCGTGGATGGAGGACGGCCATCGTCGTTGACTC
AGAGAAGTAA
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