mRNA_P-littoralis_Contig859.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig859.5.1
Unique NamemRNA_P-littoralis_Contig859.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig859.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig859contigP-littoralis_Contig859:13427..16569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size292
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791727.4440377-UTR-P-littoralis_Contig859:13426..134271680791727.4440377-UTR-P-littoralis_Contig859:13426..13427Pylaiella littoralis U1_48UTRP-littoralis_Contig859 13427..13427 -
1680791727.4844816-UTR-P-littoralis_Contig859:16548..165691680791727.4844816-UTR-P-littoralis_Contig859:16548..16569Pylaiella littoralis U1_48UTRP-littoralis_Contig859 16549..16569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791727.458285-CDS-P-littoralis_Contig859:13427..136871680791727.458285-CDS-P-littoralis_Contig859:13427..13687Pylaiella littoralis U1_48CDSP-littoralis_Contig859 13428..13687 -
1680791727.4725611-CDS-P-littoralis_Contig859:16538..165481680791727.4725611-CDS-P-littoralis_Contig859:16538..16548Pylaiella littoralis U1_48CDSP-littoralis_Contig859 16539..16548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig859.5.1prot_P-littoralis_Contig859.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig859 13428..16548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig859.5.1

>prot_P-littoralis_Contig859.5.1 ID=prot_P-littoralis_Contig859.5.1|Name=mRNA_P-littoralis_Contig859.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MSMKHIVPVGLTYIFVRCGGLICRPTHECRVLQYQDSPWINLPRAPGAVV
MEYFPRPSHQNRWIAGKVGSTLAKKKNALTHYFFCRDDQ*
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mRNA from alignment at P-littoralis_Contig859:13427..16569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig859.5.1 ID=mRNA_P-littoralis_Contig859.5.1|Name=mRNA_P-littoralis_Contig859.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3143bp|location=Sequence derived from alignment at P-littoralis_Contig859:13427..16569- (Pylaiella littoralis U1_48)
CCCCCGTCTGACGTTTTCAGGATGTCCATGAGCACCACCAGCACGGGAAT
CATGAGCGCCGTCACGAAGTATGGAGTGGCCTCCGTGACCCACAGGCTGG
TCACAAACACCAACATCGTCAGGCACCTGAACAGCAAAACAACATCATCC
ATTTTTCATGTCGTGCATATCATAATCATGCGTGAAAGCATGTTCCAAAA
AATATACTCCGTATATAACGAACAGCGGCGGCAGCCTGCCTTCGAAGTGG
GAGCGAATGTTAGAACACGTCGCCATGAATTGATACGAACCTGGTACATG
AGTCTGTTGGATATGCAGACGACACTACAGCACTGTACCGGTAGGTGACA
CAAGATGCCGCACCCGCTGGACCGATATTCATAGGTCGACTACTCCGTCA
CAAACAGGATACCAACACCAAATAAACAAATTGTTTTCGACAAGCTCCGG
ACAAGACATTTCTAACGCCACCAGTATCGGCAGTTACACTCGGCTTGTCT
CGTGGACAACATGTTTCCGAAATAGCTCTCGACGAGGCCTTTCGAACGCC
ACCTCTATCGGCACTAACTCGAGTCTTACTTGTGTTCAGAAATCAGGCTT
TCACAATCAGACGAGGGGGGGTGGTATCTCACATCATGTCACCTACGGTA
CTCTGCTGTTGCAGAGCAGTACATCTCGCGAGCGCTTGAACGCAAGAAAC
AACAACAAAACGTTTCGGCCAGAGCAGTCAGTTGTGGTCATGCTGTATCC
CATGATCAACTCACTGACGAAACGTTTTTATCATTCCAAGAAACAAATCA
GACTCGTTTTGGTTCTCAAAAAGGGGCTGAAACAAAAAAACAACGAAATA
AAATCACTGCACGCTTCTGCTGCCCCTGGTATGTCCGAGAACGTGGCCAT
AAAACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACAC
ACCTTGACGCGTGGAGATTGCCGTCTAGGTCAGGTTGAAATGTCCACATG
AGCCAGAACAGCTACAGCATTGCGCACGAATGCACACACGCGCGCACGCG
CGCACGCACGCACGCAACCGACCCAAGCCAAATCAAACCATATCAAACGA
AACGAAACGAAACAAACGAAAAGGCAGCGAAACAAACCAAACACAATGAC
GTTTTAGCCGGTAGGGGAACAAAGCGGGGTCGTGGACGGACGGCAGCGGG
GAGGAAGGAAAAGGGAAAGGGAAAGGGAAGGGAAGGGGAGGGGAGGAAAA
TGGGGCATATCATGTGAGAGGTTAACTAGCTGGCACTACCGAGACACACA
AAAACATGTTTATCCGTGTGGGACAGAAGAGTGGCAACACCAATCGCAAC
TTAACTAGGCGCAAACAGAAGGTCGACTTGCTACCGATCGTAGGCTCCCA
TGTGCCGTCTGTCCTCATGATGAGTTCACTCCCCCCGCCCAGCCAATATA
CATGCTGGACAAAGGCCTGACCCACCCTGCAAAAAAAAGGCCGGGTCTAT
GCCACAGGTTTCAAAGCTATTAAAATCTTGATCGTTTACACATTACTTAT
CTATTTTCTCCTCTCTGTTAACCTCAGCGCTACGAGCACTGGCTAGATGG
TGCATTTTTTGCGATAAGCAGACTTGAGGAACAACAACCGCGACAGCAAC
AACAGCAACAGCAATGTCGAAAAATGGCTACGTGCACGGTGCATACTTTG
CAGATTTTGGCGATGAGCAGACTTGAGAAACGACAACAACAACGACAACG
ACGACGACGACGACAGCGACCCTAACAACAACGACAACAACAACAACAAC
AACAACAAACGGCAGCAACAGCAACAACAGCAACACCAACAACAGCAACA
ACAACACCACCAACACCACCAACAACAACAACAACCATAACAACGTCAAA
CAACGACAACAATGGCGTACCAGCGACGAGCCAATGAGAGGGGTGAACTT
CACCGCCGGGAAAATCGCCTTGTCCGACGAGTCTTTGTGTGCCGCCGCGT
GCCGCTTCATGACCAGCAGCTTGTCACGAGAGACAAGGCCTGCCGGATTG
GGAGCGAAAAAGAAAAAAAGGAACAAATGTATCAACAGAAGTAGAGTACT
GCAGTGAAGGTAAAAAACAAAACAATAAACAAGGGCTAGCAGCCGTAGGG
GAGAGGAAGGAGTTCCAAGACACGTATCATATGGTATCCATCAGACACGG
TGCCAGCGGGAGGATCAGCGAAACCACAACAAGAACAAAGTTCGTTTGAA
CGTTTAACGAACACGTGGATGCGTGTTCAGGGGAGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GGGCGGTAGGTCGGAGTGGTAAAATAAGCGATTCAAGCGCGACAACAAAG
CAAGCAGGCCACAGACAGCAGGCGAGAAAAAAAAAAAAAACGGCAAAAAA
AAAGAAGGAAAGAAACGACACCCTCCCTCTACTAGGCGAAACGCCCGTCA
CGTTCGAACGTACATAATCGACACCACCATACGACACCGCCGTACCGTAC
CATAGACAGAACGCAAACAACAGCCTTTCCTTTTCGTTTTCGTCATGTCT
CTCACCTTGCACCCGCTCCAGCAGCGACTCCGCCGCCTTGGACTGGTAAA
AATCATATTTTGGGAGCCTCTCCAGAAAGCTGTATATGTACGCCCAGAGA
CGCACGCGAGGCCGACAGCGGCGGGGTCAGGGGGCCAGGGGGCCAGGGAC
AGGGGGGGGGGGAGAGAGCACTTCGTGGCGCGCGATTCAGTCTCTTTTCG
CCTATTTCCGAGTCGATAGGGGGGGGGGGAAGGGGGGATGGGGAATGCTC
AAGAGTTGGTGGTGCGGGAGGTATACGTATAGAGCATATAGTACCCGTGG
GTTTGACATACATTTTCGTTCGGTGCGGTGGTTTAATTTGCCGTCCAACA
CACGAATGTCGTGTACTGCAGTATCAGGACTCCCCGTGGATTAATCTCCC
CAGGGCTCCCGGGGCTGTTGTCATGGAGTATTTTCCCCGCCCCTCCCACC
AAAACAGATGGATAGCCGGAAAAGTTGGATCTACTTTGGCAAAAAAAAAA
AACGCTCTCACTCACTACTTCTTTTGTCGTGATGATCAGTAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig859:13427..16569-

>mRNA_P-littoralis_Contig859.5.1 ID=mRNA_P-littoralis_Contig859.5.1|Name=mRNA_P-littoralis_Contig859.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig859:13427..16569- (Pylaiella littoralis U1_48)
ATGTCCATGAAGCATATAGTACCCGTGGGTTTGACATACATTTTCGTTCG
GTGCGGTGGTTTAATTTGCCGTCCAACACACGAATGTCGTGTACTGCAGT
ATCAGGACTCCCCGTGGATTAATCTCCCCAGGGCTCCCGGGGCTGTTGTC
ATGGAGTATTTTCCCCGCCCCTCCCACCAAAACAGATGGATAGCCGGAAA
AGTTGGATCTACTTTGGCAAAAAAAAAAAACGCTCTCACTCACTACTTCT
TTTGTCGTGATGATCAGTAA
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