mRNA_P-littoralis_Contig120.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig120.8.1
Unique NamemRNA_P-littoralis_Contig120.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig120.8.1 vs. uniprot
Match: A0A6H5JCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.950e-28
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3 
Query:  192 EGKSHAWAYCDGNVVNYVVNLLIESGGDFVGEMKDYFSVTLDEGMCLDTIALDVDSDSGVDSMDEAFSGDGGSGRE 419
            E  SHAW YC+G VVNYVV+LLIESGG FVG+MKDYFS TLD+ MCLDT+A+DVDSD G+DSM EAF+G GGS  E
Sbjct:  301 ESNSHAWTYCEGKVVNYVVHLLIESGGGFVGDMKDYFSATLDDDMCLDTLAIDVDSDLGMDSMHEAFAGGGGSAGE 376
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BLAST of mRNA_P-littoralis_Contig120.8.1 vs. uniprot
Match: A0A6H5KJR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR2_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.030e-5
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:    3 KPEDVGATLMHKQWKNIKKNYRQAKERWEDKSG 101
            KPEDVGA LMHKQWKNI++NYR AK+  EDK+G
Sbjct:  147 KPEDVGAMLMHKQWKNIRRNYR-AKQEKEDKTG 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig120.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCQ2_9PHAE1.950e-2873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJR2_9PHAE3.030e-575.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig120contigP-littoralis_Contig120:65635..66472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789514.5530386-CDS-P-littoralis_Contig120:65634..659911680789514.5530386-CDS-P-littoralis_Contig120:65634..65991Pylaiella littoralis U1_48CDSP-littoralis_Contig120 65635..65991 -
1680789514.5643792-CDS-P-littoralis_Contig120:66404..664431680789514.5643792-CDS-P-littoralis_Contig120:66404..66443Pylaiella littoralis U1_48CDSP-littoralis_Contig120 66405..66443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789514.5749483-UTR-P-littoralis_Contig120:66443..664721680789514.5749483-UTR-P-littoralis_Contig120:66443..66472Pylaiella littoralis U1_48UTRP-littoralis_Contig120 66444..66472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig120.8.1prot_P-littoralis_Contig120.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig120 65635..66443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig120.8.1

>prot_P-littoralis_Contig120.8.1 ID=prot_P-littoralis_Contig120.8.1|Name=mRNA_P-littoralis_Contig120.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MHKQWKNIKKNYRQAKERWEDKSGGGGTEQDDDDGDDGDDSAGDGDGGGG
GGDDEGKSHAWAYCDGNVVNYVVNLLIESGGDFVGEMKDYFSVTLDEGMC
LDTIALDVDSDSGVDSMDEAFSGDGGSGREKR
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mRNA from alignment at P-littoralis_Contig120:65635..66472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig120.8.1 ID=mRNA_P-littoralis_Contig120.8.1|Name=mRNA_P-littoralis_Contig120.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=838bp|location=Sequence derived from alignment at P-littoralis_Contig120:65635..66472- (Pylaiella littoralis U1_48)
TGAAGCCGGAGGATGTCGGTGCGACGTTGATGCACAAGCAGTGGAAGAAC
ATCAAAAAGAACTACCGGGTAAGCGGGCGTTAAGCTGTTCGATGCAACGT
ATACTGGTGAGAACGAACCACCTGTGTGTTGTTTGGGTTGTTGGAGGTGG
CGCTTTTTTTTCCCCCGCCGGTTGTACTGCATGTTGTACTGCATGCTAAT
TATGGGTTGTCGGTGGTGGCGCTTTTTTTTTTAGCACATCGCCCGTTGTA
CTGCACGCAACGGGTGGGTTGTTGGCGGTGGCGCATTGTTAATCCTCGCC
CGTTGTACTGCATGATGTACCGCATGCAAAGTATGGGTAGTTGGTGGTGG
CGCTTTTTTTTTTCCTCGCCCGTTGTACTGCATGCCACGTCTTGTAGTCA
ACAATCTAACTCCCCGGCGTTCCTCTCGCCCCCGTTCGTCGCGTAAACGC
CACTTTTTGTGTCTTCTTGTACACACTGCAGCAGGCCAAGGAACGATGGG
AGGACAAGTCCGGTGGCGGGGGAACCGAGCAAGACGACGACGACGGCGAT
GATGGCGATGACAGCGCGGGCGATGGCGACGGTGGCGGCGGTGGCGGGGA
CGACGAGGGCAAGTCCCACGCATGGGCGTACTGCGATGGAAACGTGGTGA
ACTACGTCGTGAACTTGCTCATCGAAAGCGGGGGCGATTTTGTTGGCGAG
ATGAAGGACTACTTTTCGGTGACGCTCGACGAAGGCATGTGTCTGGACAC
CATAGCCCTAGACGTTGACTCGGATTCGGGGGTGGACTCTATGGACGAGG
CTTTTTCGGGGGACGGGGGGTCAGGCCGCGAAAAACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig120:65635..66472-

>mRNA_P-littoralis_Contig120.8.1 ID=mRNA_P-littoralis_Contig120.8.1|Name=mRNA_P-littoralis_Contig120.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig120:65635..66472- (Pylaiella littoralis U1_48)
ATGCACAAGCAGTGGAAGAACATCAAAAAGAACTACCGGCAGGCCAAGGA
ACGATGGGAGGACAAGTCCGGTGGCGGGGGAACCGAGCAAGACGACGACG
ACGGCGATGATGGCGATGACAGCGCGGGCGATGGCGACGGTGGCGGCGGT
GGCGGGGACGACGAGGGCAAGTCCCACGCATGGGCGTACTGCGATGGAAA
CGTGGTGAACTACGTCGTGAACTTGCTCATCGAAAGCGGGGGCGATTTTG
TTGGCGAGATGAAGGACTACTTTTCGGTGACGCTCGACGAAGGCATGTGT
CTGGACACCATAGCCCTAGACGTTGACTCGGATTCGGGGGTGGACTCTAT
GGACGAGGCTTTTTCGGGGGACGGGGGGTCAGGCCGCGAAAAACGT
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