mRNA_P-littoralis_Contig857.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig857.22.1
Unique NamemRNA_P-littoralis_Contig857.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig857.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig857contigP-littoralis_Contig857:85404..85810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size407
Hectar predicted targeting categorymitochondrion
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791725.7787483-UTR-P-littoralis_Contig857:85403..854831680791725.7787483-UTR-P-littoralis_Contig857:85403..85483Pylaiella littoralis U1_48UTRP-littoralis_Contig857 85404..85483 -
1680791725.805218-UTR-P-littoralis_Contig857:85783..858101680791725.805218-UTR-P-littoralis_Contig857:85783..85810Pylaiella littoralis U1_48UTRP-littoralis_Contig857 85784..85810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791725.7944238-CDS-P-littoralis_Contig857:85483..857831680791725.7944238-CDS-P-littoralis_Contig857:85483..85783Pylaiella littoralis U1_48CDSP-littoralis_Contig857 85484..85783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig857.22.1prot_P-littoralis_Contig857.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig857 85484..85783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig857.22.1

>prot_P-littoralis_Contig857.22.1 ID=prot_P-littoralis_Contig857.22.1|Name=mRNA_P-littoralis_Contig857.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MRKQRRLMSAHLTRLSGRDKREHKGCAALFAERFAGGGGTPRLFSCLIQA
PVRDTEHTKGCDFIIHLNRQYQVKSLGCLLLPWCFCPPGLCCILFQHCH*
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mRNA from alignment at P-littoralis_Contig857:85404..85810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig857.22.1 ID=mRNA_P-littoralis_Contig857.22.1|Name=mRNA_P-littoralis_Contig857.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=407bp|location=Sequence derived from alignment at P-littoralis_Contig857:85404..85810- (Pylaiella littoralis U1_48)
ATTTTCTTGTCTGACGGGAGGGTAAGTATGCGCAAGCAACGGCGGCTGAT
GTCGGCGCATCTGACCCGGCTGAGCGGTAGAGACAAGCGTGAACATAAGG
GTTGTGCCGCTCTTTTTGCCGAACGGTTCGCGGGGGGAGGTGGCACTCCG
CGTCTCTTTTCTTGTTTGATACAAGCACCAGTAAGAGATACGGAACACAC
AAAAGGATGCGATTTTATCATACATTTGAATCGTCAATACCAAGTGAAGT
CCTTGGGGTGTCTGTTACTTCCCTGGTGTTTTTGTCCCCCGGGTCTGTGC
TGCATTTTGTTTCAGCACTGTCACTGATGATGTGTATCGTGTTGTTGTGT
CATTGGACCCACGCCCCTCTATTTCAAACAGGCAGAGAGAGCTAGAGAAA
GAGACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig857:85404..85810-

>mRNA_P-littoralis_Contig857.22.1 ID=mRNA_P-littoralis_Contig857.22.1|Name=mRNA_P-littoralis_Contig857.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig857:85404..85810- (Pylaiella littoralis U1_48)
ATGCGCAAGCAACGGCGGCTGATGTCGGCGCATCTGACCCGGCTGAGCGG
TAGAGACAAGCGTGAACATAAGGGTTGTGCCGCTCTTTTTGCCGAACGGT
TCGCGGGGGGAGGTGGCACTCCGCGTCTCTTTTCTTGTTTGATACAAGCA
CCAGTAAGAGATACGGAACACACAAAAGGATGCGATTTTATCATACATTT
GAATCGTCAATACCAAGTGAAGTCCTTGGGGTGTCTGTTACTTCCCTGGT
GTTTTTGTCCCCCGGGTCTGTGCTGCATTTTGTTTCAGCACTGTCACTGA
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