mRNA_P-littoralis_Contig855.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig855.14.1
Unique NamemRNA_P-littoralis_Contig855.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.140e-25
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    7 GSNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYG 261
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGEN+NNIV+AF+G LV  GV+G  EV F+ VGHTHI IDQ+ SR+ 
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.970e-24
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    7 GSNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYG 261
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGEN+NNIV+AF+G LV  GV+G  EV F+ VGHTHI IDQ+ SR+ 
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 95
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.150e-23
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    7 GSNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYG 261
            GSNLVCT +WLAL RL  M   P    YI  L L LDNCVGEN+NNIV+AF+G LV  GV+G  EV F+ VGHTHI IDQ+ SR+ 
Sbjct:  122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 207
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.490e-22
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    7 GSNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSR 255
            GSNLVCT +WLAL RL +M+  P    +I  L L LDNCVGEN+NNIVMAF+G LV  GV+G  EV F+ VGHTH   DQ+ SR
Sbjct:  237 GSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.190e-21
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    7 GSNLVCTVVWLALARLFDMFGGP-TALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSR 255
            GSNL CT +WLAL RL  M+  P    +I    L LDNCVGEN+NNIVMAF+G LV  GV+G  EV F+ +GHTHI IDQ+ SR
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.340e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  112 DNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYG 261
            DNCVGEN+NNIV+AF+G LV  GV+G  EV F+ VGHTHI IDQ+ SR+ 
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFS 262
[Close]
BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.230e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   73 PTALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYG 261
            P+   I      +DNC  EN+NN  + F G LV   V+  VE+NFM VGHTH+ IDQI SR+ 
Sbjct:    9 PSGYLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFS 71
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: UPI0009E411EA (uncharacterized protein LOC110055995 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E411EA)

HSP 1 Score: 62.4 bits (150), Expect = 2.790e-9
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   91 DMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYGYILDR 276
            D + + LDN   EN+N  V  FLG LV   V  R+E++F+ VGHTHI++DQ+ SR    ++R
Sbjct:  497 DAIAIQLDNTAKENKNQYVFCFLGYLVETDVFSRIEISFLPVGHTHIDVDQMFSRVSVAIER 558
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BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: UPI00109BEBA1 (uncharacterized protein LOC114575229 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BEBA1)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-8
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 NLVCTVVWLALARLFDMFGGPTALYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYGYILDR 276
            N++  V+W+   RL      P+ LYI      LDN   EN+N  V AF+  LV + V  ++EV F+ VGHTHI++DQ+ SR    + R
Sbjct:  908 NILLQVLWIHKNRL------PSTLYIQ-----LDNTCKENKNMHVFAFIAYLVEIKVFDKIEVCFLPVGHTHIDVDQMFSRLSVAIAR 984
[Close]
BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Match: UPI00077B10B1 (uncharacterized protein LOC107327737 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B10B1)

HSP 1 Score: 57.4 bits (137), Expect = 1.540e-7
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   82 LYIDMLLLSLDNCVGENENNIVMAFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYGYILDRN 279
            L  D + + LDN   EN+N  V  F+  LV   V  R+E++F+ VGHTHI++DQ+ SR     +++
Sbjct:   89 LLADAIFMQLDNTAKENKNQYVFCFMAYLVETKVFERIEISFLPVGHTHIDVDQMFSRISVATEKS 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig855.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE2.140e-2561.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE3.970e-2461.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE2.150e-2361.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE1.490e-2260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE6.190e-2159.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE2.340e-1366.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE2.230e-1047.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI0009E411EA2.790e-945.16uncharacterized protein LOC110055995 n=1 Tax=Orbic... [more]
UPI00109BEBA13.420e-839.77uncharacterized protein LOC114575229 n=1 Tax=Exaip... [more]
UPI00077B10B11.540e-739.39uncharacterized protein LOC107327737 n=1 Tax=Acrop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig855contigP-littoralis_Contig855:85424..85705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7739.XP_002587783.1
Preferred nameEXOC1
PFAMsSec3-PIP2_bind,Sec3_C
Model size282
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categorysignal peptide
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
Exons1
Evalue3.73e-11
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota,38EC2@33154|Opisthokonta,3B9M0@33208|Metazoa,3CWXP@33213|Bilateria,48923@7711|Chordata
DescriptionExocyst complex component
Cds size282
COG categoryU
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791725.0129986-CDS-P-littoralis_Contig855:85423..857051680791725.0129986-CDS-P-littoralis_Contig855:85423..85705Pylaiella littoralis U1_48CDSP-littoralis_Contig855 85424..85705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig855.14.1prot_P-littoralis_Contig855.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig855 85424..85705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig855.14.1

>prot_P-littoralis_Contig855.14.1 ID=prot_P-littoralis_Contig855.14.1|Name=mRNA_P-littoralis_Contig855.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
SSGSNLVCTVVWLALARLFDMFGGPTALYIDMLLLSLDNCVGENENNIVM
AFLGCLVLMGVVGRVEVNFMQVGHTHINIDQILSRYGYILDRN*
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mRNA from alignment at P-littoralis_Contig855:85424..85705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig855.14.1 ID=mRNA_P-littoralis_Contig855.14.1|Name=mRNA_P-littoralis_Contig855.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig855:85424..85705+ (Pylaiella littoralis U1_48)
TCGTCAGGGAGTAACCTTGTCTGCACTGTGGTGTGGCTAGCGTTGGCTCG
ACTGTTTGACATGTTCGGCGGCCCCACGGCTTTGTACATCGACATGTTGC
TTCTATCCCTGGACAATTGTGTCGGCGAAAACGAAAACAACATTGTCATG
GCCTTCCTGGGATGCTTGGTGCTGATGGGGGTCGTTGGTAGAGTGGAAGT
AAACTTCATGCAAGTTGGACACACACACATAAACATCGATCAGATTTTGT
CCAGGTACGGATATATCCTTGATCGAAATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig855:85424..85705+

>mRNA_P-littoralis_Contig855.14.1 ID=mRNA_P-littoralis_Contig855.14.1|Name=mRNA_P-littoralis_Contig855.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig855:85424..85705+ (Pylaiella littoralis U1_48)
TCGTCAGGGAGTAACCTTGTCTGCACTGTGGTGTGGCTAGCGTTGGCTCG
ACTGTTTGACATGTTCGGCGGCCCCACGGCTTTGTACATCGACATGTTGC
TTCTATCCCTGGACAATTGTGTCGGCGAAAACGAAAACAACATTGTCATG
GCCTTCCTGGGATGCTTGGTGCTGATGGGGGTCGTTGGTAGAGTGGAAGT
AAACTTCATGCAAGTTGGACACACACACATAAACATCGATCAGATTTTGT
CCAGGTACGGATATATCCTTGATCGAAATTGA
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