mRNA_P-littoralis_Contig855.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig855.17.1
Unique NamemRNA_P-littoralis_Contig855.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig855.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig855contigP-littoralis_Contig855:107791..108276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791724.542965-UTR-P-littoralis_Contig855:107790..1079121680791724.542965-UTR-P-littoralis_Contig855:107790..107912Pylaiella littoralis U1_48UTRP-littoralis_Contig855 107791..107912 -
1680791724.5695455-UTR-P-littoralis_Contig855:108221..1082761680791724.5695455-UTR-P-littoralis_Contig855:108221..108276Pylaiella littoralis U1_48UTRP-littoralis_Contig855 108222..108276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791724.5587528-CDS-P-littoralis_Contig855:107912..1082211680791724.5587528-CDS-P-littoralis_Contig855:107912..108221Pylaiella littoralis U1_48CDSP-littoralis_Contig855 107913..108221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig855.17.1prot_P-littoralis_Contig855.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig855 107913..108221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig855.17.1

>prot_P-littoralis_Contig855.17.1 ID=prot_P-littoralis_Contig855.17.1|Name=mRNA_P-littoralis_Contig855.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MGENLSTVEPKGRASSEGVEASRIWWGSVPETFVPGGQVAARAGCEEGAR
VTDPAALLAGAKDGVLGLPRVPDDGLSGVLVTEVVSLDRPHHEAVLAFKE
SV*
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mRNA from alignment at P-littoralis_Contig855:107791..108276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig855.17.1 ID=mRNA_P-littoralis_Contig855.17.1|Name=mRNA_P-littoralis_Contig855.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig855:107791..108276- (Pylaiella littoralis U1_48)
TGTAGTCAACACAGCGGTAGCAGAGGGCGATGAAGTTCGTCGTCCTGTTT
CAGGCATGGGCGAAAATCTGTCAACTGTCGAACCTAAGGGGCGGGCATCA
TCTGAGGGGGTAGAAGCAAGCCGAATTTGGTGGGGAAGCGTCCCGGAAAC
ATTTGTACCAGGAGGGCAAGTAGCAGCACGTGCAGGCTGCGAAGAGGGAG
CGCGGGTGACTGATCCGGCAGCCCTGCTCGCAGGAGCAAAAGATGGTGTA
CTTGGGCTACCCCGGGTCCCCGACGACGGGTTGAGCGGTGTGTTGGTTAC
CGAAGTCGTTTCTCTCGATCGCCCACACCACGAAGCGGTGCTCGCATTCA
AAGAGTCAGTTTGAGTGCGAGGGGCGGCAGCAGTGGGCGAAAGAGAGCGG
GTGTGTGAAACATGCACGGTAGGTATCTGTGAACTCGCTGAAGAAGGCGA
GACTCGGGCGTCTTGTGGCGCGCGAGGGAGTGCCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig855:107791..108276-

>mRNA_P-littoralis_Contig855.17.1 ID=mRNA_P-littoralis_Contig855.17.1|Name=mRNA_P-littoralis_Contig855.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig855:107791..108276- (Pylaiella littoralis U1_48)
ATGGGCGAAAATCTGTCAACTGTCGAACCTAAGGGGCGGGCATCATCTGA
GGGGGTAGAAGCAAGCCGAATTTGGTGGGGAAGCGTCCCGGAAACATTTG
TACCAGGAGGGCAAGTAGCAGCACGTGCAGGCTGCGAAGAGGGAGCGCGG
GTGACTGATCCGGCAGCCCTGCTCGCAGGAGCAAAAGATGGTGTACTTGG
GCTACCCCGGGTCCCCGACGACGGGTTGAGCGGTGTGTTGGTTACCGAAG
TCGTTTCTCTCGATCGCCCACACCACGAAGCGGTGCTCGCATTCAAAGAG
TCAGTTTGA
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