mRNA_P-littoralis_Contig854.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig854.32.1
Unique NamemRNA_P-littoralis_Contig854.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5JKA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.770e-15
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGG 1240
            M RL+R +IR++RY  CMQI  +ALL  L+GEE+ FL+M   GL +   Y++LVAPTTL+GVYP    F  IGG
Sbjct:    1 MARLERGRIRYERYDECMQIMALALLCALAGEEDLFLVMTMFGLVKLEAYQELVAPTTLQGVYPMYNIFDAIGG 74
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5JMI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.060e-14
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGGL 1243
            M RL R +IR++RY  CM + L+A+L  L+GEE+ FL+MA  GL +   YE+L+APT LEGV P   FF  IGGL
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMAMFGLAKLEAYEELIAPTILEGVCPMYNFFDAIGGL 75
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5L0G5_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.410e-13
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGGL 1243
            M RL R +IR++RY  CM + L+A+L  L+GEE+ FL+MAT GL +   YE+L+APT LEGV P   FF  IGGL
Sbjct:    1 MARLARGRIRYERYDECMLVLLLAVLCALAGEEDMFLVMATFGLAKLEAYEELIAPTILEGVCPMYNFFDAIGGL 75
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5JNG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.640e-9
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGG 1240
            M RL R ++R+ RY  C Q+ L+A +  ++GEE+  +L     L+++  Y +L+APTTLEGV+P++ FF+ IGG
Sbjct:    1 MARLNRGRVRYGRYQSCSQMTLLASIGVVAGEEDLCMLWCVCCLYEWRRYHELLAPTTLEGVFPNLNFFEAIGG 74
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5KGS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.080e-8
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGGL 1243
            M  L RAK+R++R    + + LVA+L  L+GEE+  L+++ +GL Q   YE+L+APT LEGVYP    F   GG+
Sbjct:    1 MACLARAKLRYERNDEFITVMLVAVLCALAGEEDLVLVLSLLGLVQLEAYEELIAPTILEGVYPTYNLFNATGGM 75
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5KUV7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.330e-8
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2 
Query: 1070 MQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGGL 1243
            M + L+A+L  L+GEE+ FL+MA  GL +   YE+L+APT LEGV P   FF  IGGL
Sbjct:    1 MLVLLLAVLCALAGEEDMFLVMAMFGLAKLEAYEELIAPTILEGVCPMYNFFDAIGGL 58
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5KH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH24_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.370e-7
Identity = 27/74 (36.49%), Postives = 50/74 (67.57%), Query Frame = 2 
Query: 1019 MVRLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQLVAPTTLEGVYPHIEFFQEIGG 1240
            M RL R ++ ++RY  C  +  +AL+  ++GEE+  +L+    L+++  + +L+APTTLEG++P++  F+ IGG
Sbjct:    1 MARLNRGRVCYERYQSCSHMTPLALICGVAGEEDLCMLLCVCCLYEWRRHHELLAPTTLEGLFPNLNCFEAIGG 74
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5L4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.660e-6
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query: 1237 GFDFWELFRFEKPHFLELLHELNLPDAMEIH 1329
            G DF ELFRFEKPHF ELLHEL LP+A+E+H
Sbjct:   40 GLDFKELFRFEKPHFRELLHELQLPEAIEVH 70
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BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Match: A0A6H5JFA8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.930e-5
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query: 1237 GFDFWELFRFEKPHFLELLHELNLPDAMEIH 1329
            G DF ELFRFEKPHF ELLHEL LP+ +EIH
Sbjct:   90 GLDFKELFRFEKPHFRELLHELQLPEEIEIH 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig854.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JKA9_9PHAE3.770e-1554.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI7_9PHAE6.060e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0G5_9PHAE4.410e-1354.67DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JNG9_9PHAE3.640e-943.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGS1_9PHAE1.080e-845.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUV7_9PHAE5.330e-853.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KH24_9PHAE4.370e-736.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A5_9PHAE1.660e-677.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA8_9PHAE1.930e-577.42Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig854contigP-littoralis_Contig854:99756..101411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G529
PFAMsDDE_Tnp_4
Model size1331
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.66e-08
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size456
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791724.3572671-UTR-P-littoralis_Contig854:99755..1002091680791724.3572671-UTR-P-littoralis_Contig854:99755..100209Pylaiella littoralis U1_48UTRP-littoralis_Contig854 99756..100209 +
1680791724.3730528-UTR-P-littoralis_Contig854:100535..1009551680791724.3730528-UTR-P-littoralis_Contig854:100535..100955Pylaiella littoralis U1_48UTRP-littoralis_Contig854 100536..100955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791724.383615-CDS-P-littoralis_Contig854:100955..1014111680791724.383615-CDS-P-littoralis_Contig854:100955..101411Pylaiella littoralis U1_48CDSP-littoralis_Contig854 100956..101411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig854.32.1prot_P-littoralis_Contig854.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig854 100956..101411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig854.32.1

>prot_P-littoralis_Contig854.32.1 ID=prot_P-littoralis_Contig854.32.1|Name=mRNA_P-littoralis_Contig854.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MSCGNPRIEKRKNTQSHASATAPTQQDRQHTTHSTTRVVPPYTAQARAMV
RLQRAKIRHQRYTRCMQIFLVALLAELSGEEEAFLLMATMGLHQYMLYEQ
LVAPTTLEGVYPHIEFFQEIGGLISGSSSGLKSHTSWSFFTSLTCRMPWK
ST
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mRNA from alignment at P-littoralis_Contig854:99756..101411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig854.32.1 ID=mRNA_P-littoralis_Contig854.32.1|Name=mRNA_P-littoralis_Contig854.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1656bp|location=Sequence derived from alignment at P-littoralis_Contig854:99756..101411+ (Pylaiella littoralis U1_48)
TGTCATCCCATATTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCC
CATCGACGGGGTCACACAGGAGGAAGGTCAACACTGTGTGTCTGTATGTG
TCTGTCCGAGATAATGGCCACATTTTGCAACACTTTAGCACCAGTTCAGC
ACAGATCGTTACGAGCAAGAGCTTGAACTGATGAGGTAAATAGCATGTAT
CTATTGCTGCTGGGTTCACCGCAGCCCGTGTCCTGTGCGCACAGCTATGA
TGTCGAGGCGGGTTATTTTTCGTGTCCCTTTTTGGTGAAAAATGATGAGA
GGCGTTTTGAGTCCGTTGTGCTGGCGGAACACAAGCCGTTCTGCGGCACT
GCAGGAACGGTACGACGCCACCAAACAGCAACGCAGCAACGTACACGGCT
TGACGCAGTGATTTTAGAAGCGGCCCTCCAACGCACACTGCTCCTCAACC
CCGACCCGCCAGTACAAATATGGAACGTACCCAAAATGATGACAGTATGC
TGCACGATGGAAACAACACTCCTGAGGCTACATCTTAAGTGTCGGAAACG
TTCATTTTTATTTTTATTTTTTATTTTTTGGCTGTTTAGAATAATACTGG
TCCGAAACGGAGCATCTTATGTGATCAGAAACAGCCATTTTAGACGGCTA
CTTTTCGAACACCTTTTCCCGGTGCAGCACTGCTGTACTGTAGCCCGAAA
CGATCAGAAACAGTCGTTTTTCTGACAGCCTGCACCTATCGAAAACCTGT
TATTTTTTTGGGTCAAGGCGTTTGAACACCACCACGGGATAGTCAGCCTT
GCATGATCAGATGACCTGCAAACTTTGTTTTGGTATATCATAGCCTATCG
ATTCCTCGCGGCCTCTGATGACCGACGCAGGAGAAGGACCATACGTACAC
CTCACGGCCGATGGCTTTAGTATTGCTGTGGGTTCTTTCGTTCGAGAGCT
ATGGACCGAAAATCAAAATTGACCGGACGAGAGCTGGCAGCTAGCTGATG
CTGCGGCTGCTGTCCTCTAAACTCTTAAACGCAGCAGCTAGTCTAGGGTT
TCCACCAGAACACGTTTTAAATTTACGCTTTTGAATTTACGCTTTTCCTC
AAGTGACGTTTAAAATTTACGCTTTTCGTGATCACGCCGCTTGTAGCGGT
TGGCAGGCTCGTGAGGCCCGTTTTTTTTAAAACCGCCGAAACGCTCCACC
ATGTCGTGCGGAAACCCCCGAATAGAAAAAAGAAAAAACACACAGTCCCA
CGCGAGTGCGACAGCACCAACGCAGCAGGACAGACAACACACAACCCACA
GCACCACACGCGTGGTTCCGCCCTATACAGCCCAAGCGCGGGCCATGGTG
CGCCTTCAACGCGCAAAGATACGCCACCAGCGCTACACGCGTTGCATGCA
GATATTTCTGGTGGCATTGCTCGCCGAGTTGTCCGGCGAGGAGGAAGCGT
TCTTGCTCATGGCGACCATGGGCCTGCATCAGTACATGTTGTACGAACAG
CTCGTAGCGCCCACGACGCTAGAGGGAGTATATCCTCACATCGAATTCTT
TCAAGAGATTGGGGGTTTGATTTCTGGGAGCTCTTCCGGTTTGAAAAGCC
ACACTTCCTGGAGCTTCTTCACGAGCTTAACTTGCCGGATGCCATGGAAA
TCCACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig854:99756..101411+

>mRNA_P-littoralis_Contig854.32.1 ID=mRNA_P-littoralis_Contig854.32.1|Name=mRNA_P-littoralis_Contig854.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig854:99756..101411+ (Pylaiella littoralis U1_48)
ATGTCGTGCGGAAACCCCCGAATAGAAAAAAGAAAAAACACACAGTCCCA
CGCGAGTGCGACAGCACCAACGCAGCAGGACAGACAACACACAACCCACA
GCACCACACGCGTGGTTCCGCCCTATACAGCCCAAGCGCGGGCCATGGTG
CGCCTTCAACGCGCAAAGATACGCCACCAGCGCTACACGCGTTGCATGCA
GATATTTCTGGTGGCATTGCTCGCCGAGTTGTCCGGCGAGGAGGAAGCGT
TCTTGCTCATGGCGACCATGGGCCTGCATCAGTACATGTTGTACGAACAG
CTCGTAGCGCCCACGACGCTAGAGGGAGTATATCCTCACATCGAATTCTT
TCAAGAGATTGGGGGTTTGATTTCTGGGAGCTCTTCCGGTTTGAAAAGCC
ACACTTCCTGGAGCTTCTTCACGAGCTTAACTTGCCGGATGCCATGGAAA
TCCACA
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