mRNA_P-littoralis_Contig852.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig852.31.1
Unique NamemRNA_P-littoralis_Contig852.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.080e-11
Identity = 41/110 (37.27%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:   79 PLFRNGIHLFGSTTALKPFPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            PL  +G    G+      FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  501 PLSASGFECVGT------FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 604
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.120e-11
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:   79 PLFRNGIHLFGSTTALKPFPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            PL  +G    G+      FP ++L + S+F DE LMDG+D TP   FFP              + G D  G D   +A L PG  PFS+G   + VDIN FH S AH  E
Sbjct:  426 PLSASGFECVGT------FPGMDLGDTSVFTDELLMDGYDKTPYQDFFPAFMPENEAAIAAGVMDGIDGVGFDV-GVAALGPGASPFSIGSTDKSVDINRFHRSLAHACE 528
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5KFA0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.650e-11
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  252 FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 343
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.720e-11
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  565 FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 656
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.740e-11
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP + FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  205 FPGMDLGDTSVLTDEQLMDGYDDTPYEDFFPVFIPESDAANAAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACE 296
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.830e-11
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  711 FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 802
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.830e-11
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  565 FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 656
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.910e-11
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  565 FPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACE 656
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5KBH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-10
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  205 FPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACE 296
[Close]
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 37/92 (40.22%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  133 FPSLNLPNLSIFDDERLMDGFDDTPRDLFFPP------------ALQGCDLSGDDCCALATLAPGKGPFSVGKPAREVDINHFHVSRAHLNE 372
            FP ++L + S+  DE+LMDG+DDTP   FFP              L   D   D     A L PG  PF++G   + VDIN FH S AH  E
Sbjct:  205 FPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACE 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig852.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5I8_9PHAE3.080e-1137.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LE52_9PHAE3.120e-1139.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFA0_9PHAE5.650e-1140.22Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JL48_9PHAE5.720e-1140.22Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JG40_9PHAE5.740e-1140.22Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J4N2_9PHAE5.830e-1140.22Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE5.830e-1140.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE5.910e-1140.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBH5_9PHAE1.000e-1040.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL0_9PHAE1.040e-1040.22Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig852contigP-littoralis_Contig852:110832..111203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size373
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.8220305-CDS-P-littoralis_Contig852:110831..1112031680791722.8220305-CDS-P-littoralis_Contig852:110831..111203Pylaiella littoralis U1_48CDSP-littoralis_Contig852 110832..111203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig852.31.1prot_P-littoralis_Contig852.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig852 110832..111203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig852.31.1

>prot_P-littoralis_Contig852.31.1 ID=prot_P-littoralis_Contig852.31.1|Name=mRNA_P-littoralis_Contig852.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MTPSSIPATFPTAPIHGTSRFARPRSPLFRNGIHLFGSTTALKPFPSLNL
PNLSIFDDERLMDGFDDTPRDLFFPPALQGCDLSGDDCCALATLAPGKGP
FSVGKPAREVDINHFHVSRAHLNE
back to top

mRNA from alignment at P-littoralis_Contig852:110832..111203-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig852.31.1 ID=mRNA_P-littoralis_Contig852.31.1|Name=mRNA_P-littoralis_Contig852.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig852:110832..111203- (Pylaiella littoralis U1_48)
ATGACCCCTTCTTCTATTCCTGCCACGTTCCCCACAGCGCCGATTCACGG
AACGTCCAGATTTGCACGGCCCCGATCTCCATTGTTTCGAAATGGTATTC
ATCTTTTTGGCAGCACCACCGCACTGAAGCCCTTTCCCAGTTTGAACTTG
CCCAATCTTAGCATCTTTGACGATGAACGTTTGATGGATGGTTTCGACGA
TACGCCCCGTGATTTATTTTTTCCCCCCGCCCTGCAAGGGTGTGACCTTT
CTGGTGATGATTGTTGCGCCCTTGCCACACTTGCACCTGGGAAGGGCCCG
TTTTCCGTCGGTAAGCCCGCGAGGGAGGTAGATATTAATCACTTCCACGT
TTCCCGTGCCCACCTCAATGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig852:110832..111203-

>mRNA_P-littoralis_Contig852.31.1 ID=mRNA_P-littoralis_Contig852.31.1|Name=mRNA_P-littoralis_Contig852.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig852:110832..111203- (Pylaiella littoralis U1_48)
ATGACCCCTTCTTCTATTCCTGCCACGTTCCCCACAGCGCCGATTCACGG
AACGTCCAGATTTGCACGGCCCCGATCTCCATTGTTTCGAAATGGTATTC
ATCTTTTTGGCAGCACCACCGCACTGAAGCCCTTTCCCAGTTTGAACTTG
CCCAATCTTAGCATCTTTGACGATGAACGTTTGATGGATGGTTTCGACGA
TACGCCCCGTGATTTATTTTTTCCCCCCGCCCTGCAAGGGTGTGACCTTT
CTGGTGATGATTGTTGCGCCCTTGCCACACTTGCACCTGGGAAGGGCCCG
TTTTCCGTCGGTAAGCCCGCGAGGGAGGTAGATATTAATCACTTCCACGT
TTCCCGTGCCCACCTCAATGAG
back to top