mRNA_P-littoralis_Contig852.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig852.23.1
Unique NamemRNA_P-littoralis_Contig852.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.550e-15
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:    3 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 79
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BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.710e-14
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:    3 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 79
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BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.260e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:    3 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 79
[Close]
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:    3 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 79
[Close]
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.470e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:  135 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 211
[Close]
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.480e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:  190 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 266
[Close]
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.480e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:  135 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 211
[Close]
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.490e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRVEQLLSMLRATGVDKT 231
            EAT     E RL AC+ V +AW  I  W+LPT   E  LL ++LET++M   EDP+ F  RV+ ++++++A G++K+
Sbjct:  135 EATCGTDIEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKS 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig852.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JQJ2_9PHAE4.550e-1541.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K4K8_9PHAE2.710e-1441.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE1.260e-1341.56Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE1.370e-1341.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE1.470e-1341.56CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE1.480e-1341.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE1.480e-1341.56CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE1.490e-1341.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig852contigP-littoralis_Contig852:77910..78155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791722.7874353-CDS-P-littoralis_Contig852:77909..781551680791722.7874353-CDS-P-littoralis_Contig852:77909..78155Pylaiella littoralis U1_48CDSP-littoralis_Contig852 77910..78155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig852.23.1prot_P-littoralis_Contig852.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig852 77910..78155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig852.23.1

>prot_P-littoralis_Contig852.23.1 ID=prot_P-littoralis_Contig852.23.1|Name=mRNA_P-littoralis_Contig852.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
EATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMA
EDEDPRFFMTRVEQLLSMLRATGVDKTASHW*
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mRNA from alignment at P-littoralis_Contig852:77910..78155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig852.23.1 ID=mRNA_P-littoralis_Contig852.23.1|Name=mRNA_P-littoralis_Contig852.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig852:77910..78155+ (Pylaiella littoralis U1_48)
GAGGCAACGGCGAATGCGCCTTTCGAGTCTCGGTTGCATGCATGCGAGTC
GGTGGTGGATGCATGGAAGAAGATTTCAAGTTGGATTTTGCCCACAAGCT
CTGATGAGATCTTCCTGCTTACACAGCAGTTAGAGACTGTCCAAATGGCT
GAGGACGAAGACCCACGATTTTTCATGACTCGTGTGGAGCAACTTCTGTC
GATGCTCCGTGCAACTGGTGTTGACAAAACTGCGAGCCACTGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig852:77910..78155+

>mRNA_P-littoralis_Contig852.23.1 ID=mRNA_P-littoralis_Contig852.23.1|Name=mRNA_P-littoralis_Contig852.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig852:77910..78155+ (Pylaiella littoralis U1_48)
GAGGCAACGGCGAATGCGCCTTTCGAGTCTCGGTTGCATGCATGCGAGTC
GGTGGTGGATGCATGGAAGAAGATTTCAAGTTGGATTTTGCCCACAAGCT
CTGATGAGATCTTCCTGCTTACACAGCAGTTAGAGACTGTCCAAATGGCT
GAGGACGAAGACCCACGATTTTTCATGACTCGTGTGGAGCAACTTCTGTC
GATGCTCCGTGCAACTGGTGTTGACAAAACTGCGAGCCACTGGTGA
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