mRNA_P-littoralis_Contig851.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig851.6.1
Unique NamemRNA_P-littoralis_Contig851.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig851.6.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.850e-17
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:  470 DNVSCVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQMFPGKGMDRIPTEVVLALLRH 661
            DNVS VLART+R  L   AA+ IG +G GNQC+RG CFARAM MF GKGM+ IP +VVLALLR+
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig851.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE4.850e-1767.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig851contigP-littoralis_Contig851:17878..19956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1054
Hectar predicted targeting categorysignal peptide
Exons3
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.6410353-UTR-P-littoralis_Contig851:17877..182671680791721.6410353-UTR-P-littoralis_Contig851:17877..18267Pylaiella littoralis U1_48UTRP-littoralis_Contig851 17878..18267 -
1680791721.6920147-UTR-P-littoralis_Contig851:19649..199561680791721.6920147-UTR-P-littoralis_Contig851:19649..19956Pylaiella littoralis U1_48UTRP-littoralis_Contig851 19650..19956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.655705-CDS-P-littoralis_Contig851:18267..185001680791721.655705-CDS-P-littoralis_Contig851:18267..18500Pylaiella littoralis U1_48CDSP-littoralis_Contig851 18268..18500 -
1680791721.6703475-CDS-P-littoralis_Contig851:19501..195531680791721.6703475-CDS-P-littoralis_Contig851:19501..19553Pylaiella littoralis U1_48CDSP-littoralis_Contig851 19502..19553 -
1680791721.6812687-CDS-P-littoralis_Contig851:19577..196491680791721.6812687-CDS-P-littoralis_Contig851:19577..19649Pylaiella littoralis U1_48CDSP-littoralis_Contig851 19578..19649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig851.6.1prot_P-littoralis_Contig851.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig851 18268..19649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig851.6.1

>prot_P-littoralis_Contig851.6.1 ID=prot_P-littoralis_Contig851.6.1|Name=mRNA_P-littoralis_Contig851.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MSRAERPRPETLLLAAAAAAAAAALSSRGVPPSQESDAQGTRRAGSPKGE
GGKYDNVSCVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQMFP
GKGMDRIPTEVVLALLRH*
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mRNA from alignment at P-littoralis_Contig851:17878..19956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig851.6.1 ID=mRNA_P-littoralis_Contig851.6.1|Name=mRNA_P-littoralis_Contig851.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2079bp|location=Sequence derived from alignment at P-littoralis_Contig851:17878..19956- (Pylaiella littoralis U1_48)
ATTTCCATGCCAAAAACAAACAAAAAGGCCGGCAAGAAGGTGCCGGTTCG
ACTACATCGCCCGATTTTTGTTGCACGATCGGAATCGGAGATCTGTAAAA
AAAAGAAAGAAAGCGGTATAACCATAGAACAACACAGCTGGCGCGGACTC
ATCAACACTGTGCTTTCGCTTTCACCAAGAAAACACACCAGGTGTGCACT
CGTGCGTGCACACACAACGACCTCTTGTCCCTGCTGCTTTTACGCCTCAT
CACGACTGATGTTGACAAGCGTGCGGCAAGACGCGTGAAGCCCACCGATT
CCGTCCGATGTCAAGAGCTGAACGCCCGAGACCGGAGACTCTACTGCTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCT
GAGCTAAGTAGTCGTGGAGTTCCTCCTTCCCAGGAGAGCGATGCACAAGG
CACACGTGAGACTAATGCAGCGGATACGCCTGCTGGTAATGGCAGTTACG
TAGCCGGGTCATAGACACCAGAAGAGGAGTTTGGAGACGAGCTGGTGACG
CTTCTCGGCACCCCTCCTTCGACTGACTACAGCAGTACTCCAAAGCTTTG
GCGGCCGCGATGTTGGAGTAGGCAACAAACGACCCCCTCCCACATCCGCA
ACTGACTAGAACAGCAAGTATCCGAGGCTGCAGGAGAGTGCGAATGCGAG
GTGCCTCTCCCGAGGTGGGACAAGAAACACCCCAACCGGACGATAACTTG
CGGCAATCAACAGGGCTTCCTCGTGTCACAACTACTACTACAGTAGACAA
CCAGGTGTGTGTGCATTATGTTTGTGGAAGAGAGACCTCTTGCGCCAGCG
GTATGATATGACATGTACGTTCGGAATGAAACATTTCAACCCAAACAACG
GCAGCCGTAGGCAACGGCAGTAGTACACTTACGATATCACAAGAGACCAC
ACGAGCTGAAGACAACAGCAGCATCGGTATTTGAACTAGGCTCTCCGCCT
TTCACGAGTCATACTGCTATCATACGTACCCGCTTCATAGATAGTTGAAG
AAAAACTGCTCACCGAAAGCCACATGTGTCACCACACCAAAAATGCCTGC
TGTACAGGGGTTGCTGGACACATAAACTGCACGAACAGCGGACGATCTGT
AGTAGTATCGAGCGGCATGTTTGATGATGTTGTTGCCGATGCTCGTTGGT
AGTCTAGTACGAAGTATTTAAACATGATGCCATTAACGAAGTTATCGAAA
TTGACGCTGACATAAAATCACACGAAGATAGCAGTTAGTAGCACTCGAAA
ACATCGCTCGGGTGTGTTTGGGGTCTCGTAGTTCCAAGAGGCTGTTGGAG
TTTATTTTATGTCTCGATGTTTCTTCGGCTACTGAACATGCTCAGTATGC
TCAGTGAATAAAACACCCCCCCCACCCTCGCGTCCCCGAAACGCATGACC
TGACAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGAAAATACGACAAC
GTGTCGTGTGTCCTTGCTCGCACGATCCGCAGCAATTTGCACCAGGAGGC
GGCGAAATTGATCGGGTGTACGGGCATGGGTAACCAGTGCAAGCGTGGGC
AGTGCTTTGCACGAGCGATGCAGATGTTCCCTGGAAAAGGAATGGACCGA
ATACCCACTGAAGTGGTTCTAGCACTGTTGAGGCACTGATGATGGTTGCG
AATTGCTGTCGGGGAAATAGCAACTGCTGTATTTCGTAGCCCACGAGCGG
ACGGAGCGGCGAGAACTCGAAAACTGTTGTAATCAGGGACAGCACCGGCA
TGCAGAGGGTGCTGAACACGTTGCGGATCAGATAAGTCGTGGTCAAGTGG
CGACTTCGCATGGTGCGTCTGTCTGTTTGATTACTTATGAGAAGTGTACG
GGCTTGTCTCCGTTTGTTCGGCATTGAAACACGAAGTGTGCTATGATACG
ATATTGGTGGCATGAAAATAGGAAATACTTTCGAAGTAGCATATTAAACT
AAATTGTACTCAGAAATATGGTATGATATTTGATGGGGTGTCTCAGAGCA
AATCAATGACAGTTGAATCCGCGATGAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig851:17878..19956-

>mRNA_P-littoralis_Contig851.6.1 ID=mRNA_P-littoralis_Contig851.6.1|Name=mRNA_P-littoralis_Contig851.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig851:17878..19956- (Pylaiella littoralis U1_48)
ATGTCAAGAGCTGAACGCCCGAGACCGGAGACTCTACTGCTTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTCTAAGTAGTCGTGGAGTTCCTCCTTCCC
AGGAGAGCGATGCACAAGGCACACGGCGTGCTGGATCGCCAAAAGGAGAG
GGAGGAAAATACGACAACGTGTCGTGTGTCCTTGCTCGCACGATCCGCAG
CAATTTGCACCAGGAGGCGGCGAAATTGATCGGGTGTACGGGCATGGGTA
ACCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATGTTCCCT
GGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTCTAGCACTGTTGAG
GCACTGA
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