mRNA_P-littoralis_Contig851.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig851.1.1
Unique NamemRNA_P-littoralis_Contig851.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.690e-26
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   16 SPFPRRT-------SQSCLLSQMMKAAQLG---RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            SPF R+T       ++S +L Q           RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  235 SPFARKTEAEAVGTTRSSMLFQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.610e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   85 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  591 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.680e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   85 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct: 1039 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.010e-25
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   85 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            RVCDYS+ SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  398 RVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.120e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   85 RVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG 213
            RVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  474 RVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A2I1GI64_9GLOM (Uncharacterized protein n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GI64_9GLOM)

HSP 1 Score: 58.2 bits (139), Expect = 9.680e-8
Identity = 29/97 (29.90%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   10 IFSPFPRRTSQSCLLSQMMKAA--QLGRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            IF  +P+   +   + +    A  +  R+C Y+   L+KR+P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  502 IFERYPKFHCECNFIERFWGFAKRETRRICSYNFADLMKRVPEVLVSVPITTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRLPENIENLM 598          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A2N1N172_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N172_9GLOM)

HSP 1 Score: 56.6 bits (135), Expect = 3.320e-7
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   10 IFSPFPRRTSQSCLLSQMMKAA--QLGRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL 294
            IF  +P+   +   + +    A  +  R+C Y+   L+K++P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  407 IFERYPKFHCECNFIERFWGFAKRETRRICSYNFAELMKQVPEVLVSVPVTTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRIPENIEKLM 503          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: U9TZ17_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TZ17_RHIID)

HSP 1 Score: 53.9 bits (128), Expect = 9.290e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   91 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRV 282
            CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  100 CDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 163          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A015KJQ5_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015KJQ5_RHIIW)

HSP 1 Score: 53.9 bits (128), Expect = 1.890e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   91 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRV 282
            CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  165 CDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 228          
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Match: A0A1Y2GP19_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GP19_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-6
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   91 CDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHR 264
            CDY+ K L + +PA L+S+++  IRK+AR S+ Y++AY  GL G +     KK+  HR
Sbjct:  148 CDYTFKGLQETIPAALASVTILSIRKYARRSFRYMDAYRKGLSGRVAELQAKKYKSHR 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE3.690e-2656.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE2.610e-2571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE2.680e-2571.43Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE4.010e-2570.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE2.120e-1172.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I1GI64_9GLOM9.680e-829.90Uncharacterized protein n=11 Tax=Rhizophagus TaxID... [more]
A0A2N1N172_9GLOM3.320e-728.87Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
U9TZ17_RHIID9.290e-742.19Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A015KJQ5_RHIIW1.890e-642.19Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A1Y2GP19_9FUNG3.220e-643.10Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig851contigP-littoralis_Contig851:11534..11827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UEZ3
Model size295
Max annot lvl4751|Fungi
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.7e-06
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.6095455-CDS-P-littoralis_Contig851:11533..118271680791721.6095455-CDS-P-littoralis_Contig851:11533..11827Pylaiella littoralis U1_48CDSP-littoralis_Contig851 11534..11827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig851.1.1prot_P-littoralis_Contig851.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig851 11534..11827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig851.1.1

>prot_P-littoralis_Contig851.1.1 ID=prot_P-littoralis_Contig851.1.1|Name=mRNA_P-littoralis_Contig851.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
PSLIFSPFPRRTSQSCLLSQMMKAAQLGRVCDYSIKSLLKRLPATLSSMS
LSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDRVDAVL
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mRNA from alignment at P-littoralis_Contig851:11534..11827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig851.1.1 ID=mRNA_P-littoralis_Contig851.1.1|Name=mRNA_P-littoralis_Contig851.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig851:11534..11827- (Pylaiella littoralis U1_48)
CCGTCCCTGATCTTCTCCCCGTTCCCACGACGGACTTCCCAGTCTTGCCT GCTCTCGCAGATGATGAAAGCGGCGCAATTGGGCCGGGTGTGCGATTATT CCATCAAGAGTCTTCTAAAACGACTCCCTGCCACCCTTAGCTCCATGTCT CTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAGGC GTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAAAGAAGT GGACGTGCCACCGCTCATCTACTGATCGGGTCGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig851:11534..11827-

>mRNA_P-littoralis_Contig851.1.1 ID=mRNA_P-littoralis_Contig851.1.1|Name=mRNA_P-littoralis_Contig851.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig851:11534..11827- (Pylaiella littoralis U1_48)
CCGTCCCTGATCTTCTCCCCGTTCCCACGACGGACTTCCCAGTCTTGCCT
GCTCTCGCAGATGATGAAAGCGGCGCAATTGGGCCGGGTGTGCGATTATT
CCATCAAGAGTCTTCTAAAACGACTCCCTGCCACCCTTAGCTCCATGTCT
CTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAGGC
GTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAAAGAAGT
GGACGTGCCACCGCTCATCTACTGATCGGGTCGATGCCGTGTTG
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