mRNA_P-littoralis_Contig851.9.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig851.9.3
Unique NamemRNA_P-littoralis_Contig851.9.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig851.9.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig851contigP-littoralis_Contig851:39704..46775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1391
Hectar predicted targeting categorychloroplast
Exons4
Cds size777
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig851.9.3prot_P-littoralis_Contig851.9.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig851 44914..46372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.4496956-UTR-P-littoralis_Contig851:39703..398751680791721.4496956-UTR-P-littoralis_Contig851:39703..39875Pylaiella littoralis U1_48UTRP-littoralis_Contig851 39704..39875 +
1680791721.4636607-UTR-P-littoralis_Contig851:44874..449131680791721.4636607-UTR-P-littoralis_Contig851:44874..44913Pylaiella littoralis U1_48UTRP-littoralis_Contig851 44875..44913 +
1680791721.5214236-UTR-P-littoralis_Contig851:46372..467751680791721.5214236-UTR-P-littoralis_Contig851:46372..46775Pylaiella littoralis U1_48UTRP-littoralis_Contig851 46373..46775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.4790256-CDS-P-littoralis_Contig851:44913..449891680791721.4790256-CDS-P-littoralis_Contig851:44913..44989Pylaiella littoralis U1_48CDSP-littoralis_Contig851 44914..44989 +
1680791721.4891143-CDS-P-littoralis_Contig851:45614..462931680791721.4891143-CDS-P-littoralis_Contig851:45614..46293Pylaiella littoralis U1_48CDSP-littoralis_Contig851 45615..46293 +
1680791721.5055318-CDS-P-littoralis_Contig851:46350..463721680791721.5055318-CDS-P-littoralis_Contig851:46350..46372Pylaiella littoralis U1_48CDSP-littoralis_Contig851 46351..46372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig851.9.3

>prot_P-littoralis_Contig851.9.3 ID=prot_P-littoralis_Contig851.9.3|Name=mRNA_P-littoralis_Contig851.9.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=259bp
MKTSCVLTVGICGMAATEAFVFNPAGARIVQHAGNAESCSVASMTRRAAA
SQLQQQRKSFRVASAGDKIDEALDDGREKAGEVKDAGQEKADEVLGKTDD
LLGDGKEKAGEVKDAGQEKADEVLGKTDDLLEDGKEKAGEVKEAGKETAE
EAAEKTDGLLSAGKEKAGNVIEKTGDVLSSGKDKVGDVLSSGKEKAGDVL
SAGKEKAGDVLGAGKEKAAEVEEVGREKADEAKENTKDAIETGSQKAEEA
LEKSLCWL*
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mRNA from alignment at P-littoralis_Contig851:39704..46775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig851.9.3 ID=mRNA_P-littoralis_Contig851.9.3|Name=mRNA_P-littoralis_Contig851.9.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7072bp|location=Sequence derived from alignment at P-littoralis_Contig851:39704..46775+ (Pylaiella littoralis U1_48)
CATATTTCATCCACGTGCCCCTTGGAGGTCCCCGGTTCCAACCGGCCCTC
CCCGCAGCACTCATATCAGTACAGCAACAGGCCTGATCCATCAGCCACAC
AACAACGCAACGAGGACAACTTTGGAAAGAGTCTCAACACACACCGTCTT
TGGACTACTCCCAAAGCAGCAGGTGAGAGAAAGAGAGTCACACGCCATGC
CCACGATTTCCTGCGAACAACTCGCTCTGACAGCAGTCTTCATCTGACAC
ATGGCCAACGGCACACGTGATGGCCCTCTACGCACATGTTACACATACAG
ATTGACACTCAAGATGCCGCCGCGTGTAGATGAGAGCTTCTGGCGTGTGC
GCTCCGCGCAATCGATGGTCGGGGGTCGAACTATATAGGAGTAGTAGGCC
CGCTGTAGAGGAAAAAACAGCAGTCGTGCCGAGTTGGCTTGATGATGAAT
TTCTAACTGGAGAGATAAAACATGATTTTGGGAATTTATTGTAAAAGAAA
AAACAAGATCAAAGCGGCTACCTGATGGCTCTCGAAGCGCATGATACACA
TGACAGCTCACAAGCTACGGCGTGTAGATGAGGGTTGTGGTGTGAGTGCT
CCACGTAATCGAGATATGGAGGTCGAACAACATCAGCAGTGTCAGGTCCG
ATTTAAGGAAAAAAACAGCAGCTCTATCGAGCACATGATTTTGGGAATTT
GAGACCAAAACCACAGCGGGATGCATGATGGCTTCTCGCTTCCTGCATCT
TGTACACAGACAGCGCACAAGATACGGCGAGTAGATGAGGGCTGTGGTGT
GAGCCCTCCACGTAACCGATGGATGGACGTCGAACTACATCAGTAGTGGC
AGGTCCGCTATAGGGAGAAAAGCAGCAGTTCTACCGAGTTGGCTCGATGA
CGAGTGGAGAGGCCCTCAATTTGTTTCATGATCCGTACAGCAGGATCATG
TACACTATGAGCGTATTGTTGTATCACATGATATTTTATCTGTCACACAC
ATGATTTTGGGAATTTGAGAATATCGTGGCGGCTCCCGATGACTTCTCTA
CTCGCATTTTACACATCCACAGCAAACAGGATACGGCGTACAGATGAGGC
CTGTGGTGTGTCCGCTCCACCCGACCGATGTAGATGGGAGCCAAAGTAGG
TCAGTAGTGAAAAGATCCAATGTAGGGAAAAGGCAGCAGTATTGTCGAGT
TGGCTCGATGATGATGGAACTCTAGACTTGACCTGTTGAGAGGCTGGCTC
TTTCGAAATAACCACGAAACAACGGCAGCTTTTTTGGAATTTGAGAATTT
TGTACATCCTAAAAAAACTAATTTGGCAGGAACACGGGCATCAAGGATAT
CACCGCGTACAACTACTACCGCTGTAGACCTGATTGCTGTGATCACTGCA
GCTACCGTCCGCTCGATGGTGATGTCTTTCACATGTGCGAGGTATTATTA
TTAACTCCACGTTGTACCCCAGGGCGCACGCACACGCAAGACAATCGTTG
GGCACGTTACCCGAGATCTGGTTGGTGGGCAATCTCTTTTTTTCTGCCGA
ACAACGCCTGAAATGGTGCGCTGACGACATACTTGAAGTACATACAGTTG
CAAGCGCATCGTGTGCTGCCGGTCGGTCGATTTTTGTCCGCCTGACTGAG
TCACCTGCTACGCATCACATTTTATTATCCTGTTGTCCACCCAGCACGTG
CCACCTACTACGTATACATATGTATGTGTAGTATATGTATACCGATTGCT
GTACTACGGCAGTTCCGACGCGTTTCGTCCACCTAACTAGGCACGTTTTA
CGCGCCGCATTCCGTGTATTTTTCATTGATGGCACGCGGTTTACGGTAGC
CAATGCGCTGGCCTCTCTCGTACGTACTTCGAAGTAGTTTTTCCGAGGAA
GGACAGGATAATTTAAACTTCGTACTAGTAGTACTTCGATAGAGAGAGGT
GGTTGTCGCTGCAGCCGCTGCAATACGTATGATATGTGCAGCGGTTGATA
CCGTTAGACCAAAATGACGTGAGCTACTGCTGTTTTACTCTCTTCTAGTT
ACACACAACGGCAGTAGGGCAGGCGGGTGTGAAAAGACGATATGATACGC
TTCGAATGATCTATTTTTCAAAGCAACGAGTGAAAAAAATCGTGTGACAC
AGACTGTGTCACAGCAGTTGAGTGTATTCAACACACTTGCTGTCCCGAAC
GCAAAAAAAATGACCACGACAAACAGCGTACCAAAGTGACTGCCATCGGC
AGAAGACGATTACACCGCTGGCTTTTAGTCTAAGGCTCTAAGCGGCGGTG
CGAGGGAAGGAACTGTGTTATTTTCACGCAATGATATTGTTCAACGCCCC
CCCCCCCCCTACTACGATAGAAAAGTACAGCAGTACCGGCCGGCAGGCAA
GAACCTGAATATCGGCCTGAGGCTGGGTCTCTTGTTTTGTGACCACGATG
AGAGCACGCCGTACCTGAACTATACCATTAAGATTTCGCGTGGGGCCGTA
GTACCAGGTAGTAATTTCTCTTTCTTTTCCCTCTTGTTCACTCGTACCCC
ATACGAGTAGAACGATGCTCCGGAGCTTGACCTCCCGGCGTAGCGCCGTG
TATTATATGACCTAGGTATACGGCCCGTATCTACATCGAAGTAGAGACAC
AATGTCTCCACGGAACTCTCGAGTGGAATAATCCTGTTTACGGCGGCACT
AGATCAACTGCAAGGTTTTCCATTCCATAACACGGCCGTGACCACAGGGC
AATTTATACCTGGTCCAAAGTAGTGTATAGTAGGCGGTATCCATGTAGGG
TGTTTTATTTTTATATGTACATCGATGGTTCGTGTTTTTTGTTTTCTTGA
AAAAGGCCCTTGTCTGTTTCCTACTGTTCACCGAATTTTCGTTTTGATTT
CGGACCCCCCTGCCCAAATCAAAGTTGATGACCCCCCTACCCCCCCCTCG
AAACGACCCTGCCGACCACAGCAGGAGACAGCACCGACCAATACTCGGCT
CATGCGACACCAATAGCAATCAAACCTGTTGGAGCGTATCCTTCAGTGTT
CGGAGGTTGACCACAGGAATTTTGGTGGTGTGGGCCTTGGCTGCGCGTCG
AGATATTGTCGGCGGTGTGTGTTGAGGTGGAGCGGTCAAACAGGAAAAGG
TCGTGCGAGCCTGATTTTTTGTGCCGGAAAATCGGGCTCGGACGACCTAC
TTCTTTCGCCAAATGTCCATACCCCAACCCACTCCGCCGCCAGAATCTCG
CCACAGCCAACCCCCAAACTAACCAAACTTGCCGTGGCTAATCCCCGAAT
ACTGCAGTGCGCGCTCCAGCAGGTCTGATCGCGATTGATATTGCAGGGGC
CAAATCCATGCAGTAGTGGTTGGTGCTGTTTGCTCTAAAAACGAAATCTC
TGAACGGCAAGCAGTTGCAGGAATATAAAACCTGCCAACGTTGGCAGCGA
AATAAGACCTGCCCACATTTGGCAAGATTTTTGTCATGATTTTTTGGTTC
ATCATACTTGACCGCCGTACCGACTGTGGCAGCAGCAGCAAACCCATTGT
CTTACACCGAAAACATACCGCTGCTGTGTTGCGCTTCCTGGTGTGCGACC
CCGGCTGATGTGCGCACACACCTAAAGGTGAACACATGCGTCCGGAACCG
ATGGAATGACAGCAAACACGCAGCATACACACTCTTGTTTGGTTGCCTTG
TTTTTTTCGAGCCTGTACTTTGTTTTCGTACCCCGGCAACCACAGAACGT
ACAGTAGTCCAACGGTACTATTTCTGGTATTGGCCTGGTTTGTGACCACA
GGCCAGACTTGAGCGTTTTCCTTGCGCTGTTTCTATTTCTCGGCCGATGT
TCCACAGATCGACCTTCACAATAGATAGGCATTCAATGCAGCAGTGAAGG
AAAAGTGATGTGTGTGTTTGTGTTGTGTGTGTGTGTGTCCCATCTATTCT
GGGCGCCAGTGTACACCCTTTCGGTATGTGTGGTGGGTATTTTAGCCGGG
GCCACGATAGACGGGAAAAAGGTTATACTGGACCATTTTTTTTTCTCCGA
AAACGGTTGCACTGGACCATTTTTTTCTATCTCCACCTTTCTTATGCGCT
GCTCGTATTCATTTTTATCGACTAAAATATTTCAAAAGGTTCAGGTATTT
GAGATTTGAAGCGTTCCGTTACTGGGAGTAAACACTGGTTCCTTTCTAAC
AAGAAGATCGCACTCATGTTTTATCTTTTCTGCTCCCACCTTTTTGCGAT
ATACTACTGTGTATACGAGTGCTTTGGGAGAGGTTCAGCCGGCCAGCTTT
CAGATGGTGGAACAATTGCAAGAGAGACGACAACCATACGGAATCCGCAA
AGAATTTTCCCTGGTTCCTCGGATTTTCATTCGGCCGACTTGACACTACT
CGTGGTACATGGTAGAGACGGCGAGAGAGATGAGAGAAAAAGACAGGAAG
CGGAGACAGAGAGAGCACACACTTGACTAAATCTGCTGTATGTATATACA
AGTGCGCAAAAGGCAAAGAGAGGAGAGTGGGAGAAGACTACTGCCACTTC
CTCCGATCTCGCCCTGTTGTCAAAAACTTCCCCAAAGCTTCAAATTTCTT
TTCAAAATGGTTTTAGTTTCAATCCTTGCGAAGGGTCCGTTTCGGTTGGA
GGCGAAAACAAATTATTTTGAAAGATGGGATTTATCTCGTGCCGAGAGGA
GCACAAGATTTCAATAAGAGAGTCGGTCCGCCTGCCGCCAAAACCGCCGT
CCATGTCACTCCTGACTGTTCGGCAAGTGACCGCTGTTCTGATCGCCCGT
GTGCTCGAATCGGCGACATAACCGACGTTACCGCATCTCACCTAAAGGCT
TAGCTAGTAGTTTATAGTATCATGACGAAGGCTCACGTTGGCATCTGCTC
TCTCCGCACCCTTGCACTCACCGCATCTCACCTACAAAAAAAGCTTCAGC
TTGTAGTTTGTATTTTCATGACGAAGGATCGCGTTAGCCTCTGTCCTCTA
TGCACCCGTGCACTTACCGCATACATTAATTACCGCATCTCGCAAACGGG
CCTTGGCTAGAAGTTTATATTATCATAGCGAAGGCTGACGTTAGCCTCTG
CCCTCTTTGCGTCCGTGCACTTGCCGCCTCTTGTGCCTTCTGTTACCCGA
ATCACCCCCCCCCGCAAACAGGAAATCGGCTTAATTCTTTTCGCGAAACG
ACACAAGAAAATGAAGACTTCCTGCGTTCTGACGGTGGGCATCTGCGGCA
TGGCCGCAACGGAGGCGTTCGTGTTTAACCCCGCCGGTAAGATATTAAAA
GTGTGATGCCGACCATGGTATAACTGTTGACTCTTCAGGTGCACGTGATC
GTCTCGACGTCCATATTCGACTCGATTTTCGACGAGCGAAAGAAAACTCT
CAAAACCTGCTAGCGATATGGTTCAAGGCAAACACCGCATAAGCACAAAC
TTGGGGGGAGGGGGGAGGGTCGACGAGAAAAATACCTCTCTGCGAATCTG
GACGGGACCATCGTAGCCTTTGCAGGTTTTTTGCCAGGTGGGACGGTCAA
TCGCTAACGTGGTCAGGAACGCTCACAAGAGTCGGCAATGCAGTTGCAGT
GCACAAAGGATATACTTCGAAGTACAACTTTTAGCAAACAGAACGCTGCG
TCACATCAATTGTTCGGCTGCAAGTATCTTTTTTTTTTTAATAATATTTC
CTTAAGTCGATAGCACAACGCACCCATCTATCCACCCGCGAAGGGCAAGA
AGCTGCTCTATGATACGACAAAGGTCTTCGCGGGGCCAATCGCCAAGTGC
TTAAAATAAACAATAAAGTCGAGTATGAGTCGCCCTCCCTAAGCCCCGCC
TCCCAATCCCCCTCCCCCCACCTTCTTTGTTCCGCCACCCGACATCGCGC
GCGCTCGCTAGGGGCGCGCATCGTGCAGCACGCGGGCAATGCCGAGTCGT
GTTCGGTCGCCTCGATGACCCGCCGGGCGGCAGCATCCCAGCTGCAGCAG
CAGCGAAAGAGTTTCAGGGTCGCGTCGGCCGGCGACAAGATAGACGAGGC
GCTCGACGACGGCCGCGAGAAGGCGGGCGAGGTGAAGGACGCCGGCCAAG
AGAAGGCCGACGAGGTGCTCGGGAAGACGGATGACCTGCTCGGGGACGGC
AAGGAGAAGGCGGGCGAGGTGAAGGACGCCGGCCAAGAGAAGGCCGACGA
GGTGCTCGGGAAGACGGATGACCTGCTCGAGGACGGCAAGGAGAAGGCGG
GCGAGGTGAAGGAGGCCGGCAAGGAGACGGCGGAGGAGGCGGCCGAGAAG
ACCGACGGCCTGCTCTCAGCGGGCAAGGAGAAGGCGGGCAACGTGATCGA
GAAGACGGGCGACGTGCTTTCATCCGGCAAGGATAAGGTGGGCGACGTGC
TCTCATCCGGCAAGGAGAAGGCCGGCGACGTGCTCTCGGCCGGCAAGGAG
AAGGCGGGTGACGTGCTCGGAGCGGGCAAGGAGAAGGCGGCGGAGGTGGA
AGAGGTCGGCCGTGAGAAGGCGGATGAGGCGAAGGAGAACACCAAAGACG
CCATCGAAACCGGCAGCCAGAAGGCGGAGGAGGCGCTGGAGTAGACCCCC
CCCCCCCCCCTCCCCCCTCCTCCAGTAGACGGTGAAGGGTGCCGGAGGAA
GAGTTTATGCTGGTTGTAGGGGAGCGTGATACCCCCTCCCTCCACTAGCA
GACGGTGAAGGGTGCTCGAGAAAAAGTTTATGTTGGTTGCAGGCGAGCGT
GATTTGAGGAAGTATTGTCAACGCCAGAGAGGCCGAGACAACGACAAAGG
GAAGTAAATAGAGCAGATACAAAGGAGAGAGAGATTTTAGGTGCCCACAG
TTTTCTGGTTTGTCATTTTTTTGGCAGGAGATTTCTGATTGGTTAAAAAT
CCCTGGTTGACCGATGACGCCATCCAGAGCAGGATAGTCTGAGAAGAACG
TACTGTGAGGGAGAGGGCGTTTTACCTGAGCCCCCTGCTGCCTTGGTTTT
TTGGAGTTGCCTTTAGAAACATAGATCCACAAGTCTTGAAATGACACGAA
ATTTAATGCGACACATGTTGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig851:39704..46775+

>mRNA_P-littoralis_Contig851.9.3 ID=mRNA_P-littoralis_Contig851.9.3|Name=mRNA_P-littoralis_Contig851.9.3|organism=Pylaiella littoralis U1_48|type=CDS|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig851:39704..46775+ (Pylaiella littoralis U1_48)
ATGAAGACTTCCTGCGTTCTGACGGTGGGCATCTGCGGCATGGCCGCAAC
GGAGGCGTTCGTGTTTAACCCCGCCGGGGCGCGCATCGTGCAGCACGCGG
GCAATGCCGAGTCGTGTTCGGTCGCCTCGATGACCCGCCGGGCGGCAGCA
TCCCAGCTGCAGCAGCAGCGAAAGAGTTTCAGGGTCGCGTCGGCCGGCGA
CAAGATAGACGAGGCGCTCGACGACGGCCGCGAGAAGGCGGGCGAGGTGA
AGGACGCCGGCCAAGAGAAGGCCGACGAGGTGCTCGGGAAGACGGATGAC
CTGCTCGGGGACGGCAAGGAGAAGGCGGGCGAGGTGAAGGACGCCGGCCA
AGAGAAGGCCGACGAGGTGCTCGGGAAGACGGATGACCTGCTCGAGGACG
GCAAGGAGAAGGCGGGCGAGGTGAAGGAGGCCGGCAAGGAGACGGCGGAG
GAGGCGGCCGAGAAGACCGACGGCCTGCTCTCAGCGGGCAAGGAGAAGGC
GGGCAACGTGATCGAGAAGACGGGCGACGTGCTTTCATCCGGCAAGGATA
AGGTGGGCGACGTGCTCTCATCCGGCAAGGAGAAGGCCGGCGACGTGCTC
TCGGCCGGCAAGGAGAAGGCGGGTGACGTGCTCGGAGCGGGCAAGGAGAA
GGCGGCGGAGGTGGAAGAGGTCGGCCGTGAGAAGGCGGATGAGGCGAAGG
AGAACACCAAAGACGCCATCGAAACCGGCAGCCAGAAGGCGGAGGAGGCG
CTGGAGAAGAGTTTATGCTGGTTGTAG
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