mRNA_P-littoralis_Contig850.7.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig850.7.5
Unique NamemRNA_P-littoralis_Contig850.7.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig850.7.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig850contigP-littoralis_Contig850:33809..35785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size718
Hectar predicted targeting categoryother localisation
Exons3
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791720.5306847-CDS-P-littoralis_Contig850:33809..340931680791720.5306847-CDS-P-littoralis_Contig850:33809..34093Pylaiella littoralis U1_48CDSP-littoralis_Contig850 33810..34093 -
1680791720.5460005-CDS-P-littoralis_Contig850:34840..349471680791720.5460005-CDS-P-littoralis_Contig850:34840..34947Pylaiella littoralis U1_48CDSP-littoralis_Contig850 34841..34947 -
1680791720.5570083-CDS-P-littoralis_Contig850:35459..357851680791720.5570083-CDS-P-littoralis_Contig850:35459..35785Pylaiella littoralis U1_48CDSP-littoralis_Contig850 35460..35785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig850.7.5prot_P-littoralis_Contig850.7.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig850 33810..35785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig850.7.5

>prot_P-littoralis_Contig850.7.5 ID=prot_P-littoralis_Contig850.7.5|Name=mRNA_P-littoralis_Contig850.7.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
VRYTQRPITATSLPLCPLSAVLRGTNPENNGLTGETEVFPLASQNCPTYA
TFKCRRQTRVQPPSRPRMLSLHLCLGLQQLLVVPPPQQASGPRQGVTASR
IQQTRFCSRGLCLSSYFRESRPSRPHLQRVLKAVCPGGSMATPEGSNTAA
GSGTAAKADDGPPPLDLVAMLCNLPAHGFWRQQQDVDRSLALEAGALSSY
FQALGRGPNSQARSRKVSKDLSRGGVYRHESLAVGKRVR
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mRNA from alignment at P-littoralis_Contig850:33809..35785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig850.7.5 ID=mRNA_P-littoralis_Contig850.7.5|Name=mRNA_P-littoralis_Contig850.7.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=1977bp|location=Sequence derived from alignment at P-littoralis_Contig850:33809..35785- (Pylaiella littoralis U1_48)
GTTCGATATACACAGAGGCCGATCACCGCGACTTCCCTCCCCCTCTGTCC
GCTGTCCGCTGTCCTCCGAGGAACCAATCCAGAAAACAATGGTCTGACCG
GTGAGACGGAGGTATTCCCGTTGGCGAGTCAGAACTGTCCGACGTACGCA
ACGTTCAAATGTCGACGACAGACGCGGGTGCAGCCGCCATCGCGGCCAAG
GATGCTGTCGCTGCACCTCTGTCTGGGTCTGCAGCAGCTGCTGGTGGTGC
CCCCGCCGCAGCAAGCGAGCGGCCCAAGACAGGGGGTAACAGCGTCGCGA
ATACAGCAAACCAGATTTTGTTCAAGGTGGGTGCAGCAGTGACATGATTT
TTTTGGTACTTCTGTGTCAAATGTCTCGCTCTCTCTCGTGAAGAAGTTTC
GCATATCATACGAGCTGGGCCCGGCCAAGAACCCCATTGGTCTATGTGTC
AGTCGGGCAAATCTCTTGAACGACGCTAAAGCACTGGCAACTGAGCATAT
CCTCGTAATCAGGTAGACAAGGCGGTCATTTGAAGCTATACATCGTTGGA
ATCGGCCATGGTGGTACCAAAAAAAGTTGCGTGAAGCCAGTGTCTCCATA
TCTGAACTTTTGTGTCGTTCGGTTTTATTATGATGCATTTTCAAAAATTC
CGCACGAAAAAAAGTGAGTGGAATTTGCCCAACTTTCTGAGCGTTAAGGC
CATGGTGGAAGGGGTGTTATCTACCGTAGGAAAACCTGAAGAAAAAAAAA
ATACACCACATTTCGACCAAAAAAAACTGACCGTTTCATCTAAAATATAA
TAATAAAAAAGACGAGACTGCTGTTGCTGACGAATCAGAGGGCTCTGTTT
GAGCTCATATTTTCGGGAATCCCGACCGAGTCGTCCTCATCTCCAGAGGG
TCCTCAAGGCCGTCTGTCCCGGCGGAAGTATGGCAACTCCTGAAGGTGAG
GTTGTTACTTAGGTACTCACACAAGTCCTCAGTGAAGGTTTGGCTGGCTG
TGGTGCCCTGTGGCTCGAGAACGGGTAGCCACGCATTTGTCATGCCGACC
AGCTGAGTTAGAACACAGCAGTCTGGCAGCTAAGAGACGTGTTTCTGAGT
TCTGGAAGCACTGAGAGCTGTGACCGATGCTTAGTGGCTTAGGTCCAGCA
CCGGGTAATTTGAAGCGCTTTGCTCGTCTGTGATTTCTCAATCGGTTGCG
TACAACCCGATTCCGAGCCAAAACATCGTATTTTAGGTACCCTTCCCCAA
GATAAAAGCACATCGACCAGATGCCCATTAAGCTCTAGCTGAGAGGCGTA
GACAACCCCCTACAACCTTGAAAAACCTGCGAGATTCATAAATGTAGTGG
ACCTGATGTGTACGGAGGCAACGCCACAGAGAGCGAGAGTGTGTGTACAC
CACAGCAGTAGAAATCGATTTTTTAGCGTGTAAAGGTTTTCTGCTCGGAC
AAGTGCCCGCCTATTACCCCGAAAACAATTGCCCCAGGGGTGTCATAGTT
GTGTGTGGGTTCTAAACCTCGGGCGCAAAATCACAGACGAGCGAAAGTTA
GCTGTGGTCAAATAGATTCGTATAAAACCGTAAGCATTCGTCACAGATTA
TACATTAGCGAGAAAAGTCAAATACCGCAAACCTTGAAATGTGCTAAAAT
TCGACTATTTGTCAACTTTTGTATTGGAATTTATATGAGCAGGTAGCAAC
ACAGCAGCAGGTTCGGGCACAGCAGCCAAGGCGGACGATGGCCCTCCTCC
TCTGGACCTCGTAGCGATGCTGTGCAATCTCCCGGCACACGGCTTTTGGC
GCCAGCAGCAAGACGTAGATAGGTCATTGGCGCTCGAAGCTGGGGCACTT
AGTTCGTATTTTCAGGCACTGGGCCGAGGACCAAACTCTCAGGCGAGGAG
TAGGAAGGTCTCCAAGGATCTGTCCAGGGGTGGTGTGTATCGCCACGAGA
GTTTGGCAGTAGGCAAGAGGGTCCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig850:33809..35785-

>mRNA_P-littoralis_Contig850.7.5 ID=mRNA_P-littoralis_Contig850.7.5|Name=mRNA_P-littoralis_Contig850.7.5|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig850:33809..35785- (Pylaiella littoralis U1_48)
GTTCGATATACACAGAGGCCGATCACCGCGACTTCCCTCCCCCTCTGTCC
GCTGTCCGCTGTCCTCCGAGGAACCAATCCAGAAAACAATGGTCTGACCG
GTGAGACGGAGGTATTCCCGTTGGCGAGTCAGAACTGTCCGACGTACGCA
ACGTTCAAATGTCGACGACAGACGCGGGTGCAGCCGCCATCGCGGCCAAG
GATGCTGTCGCTGCACCTCTGTCTGGGTCTGCAGCAGCTGCTGGTGGTGC
CCCCGCCGCAGCAAGCGAGCGGCCCAAGACAGGGGGTAACAGCGTCGCGA
ATACAGCAAACCAGATTTTGTTCAAGAGGGCTCTGTTTGAGCTCATATTT
TCGGGAATCCCGACCGAGTCGTCCTCATCTCCAGAGGGTCCTCAAGGCCG
TCTGTCCCGGCGGAAGTATGGCAACTCCTGAAGGTAGCAACACAGCAGCA
GGTTCGGGCACAGCAGCCAAGGCGGACGATGGCCCTCCTCCTCTGGACCT
CGTAGCGATGCTGTGCAATCTCCCGGCACACGGCTTTTGGCGCCAGCAGC
AAGACGTAGATAGGTCATTGGCGCTCGAAGCTGGGGCACTTAGTTCGTAT
TTTCAGGCACTGGGCCGAGGACCAAACTCTCAGGCGAGGAGTAGGAAGGT
CTCCAAGGATCTGTCCAGGGGTGGTGTGTATCGCCACGAGAGTTTGGCAG
TAGGCAAGAGGGTCCGG
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